KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:28 2014 Check: 00 .. Name: bmy_07525T0/1-506 Len: 518 Check: 5873 Weight: 1.00 Name: ENSBTAP00000039284/1-355 Len: 518 Check: 3990 Weight: 1.00 Name: ENSTTRP00000002896/1-492 Len: 518 Check: 8587 Weight: 1.00 Name: ENSP00000365312/1-508 Len: 518 Check: 2403 Weight: 1.00 Name: BACU018708/1-466 Len: 518 Check: 9822 Weight: 1.00 // 1 50 bmy_07525T0/1-506 -----MLLEE EIPSGKRALI ESYQNLTRVA DYCENNYIQA TDKRKALEET ENSBTAP00000039284/1-355 MAELQMLLEE EIPSGKRALI ESYQNLTRVA EYCENNYIQA TDKRKALEET ENSTTRP00000002896/1-492 ---------- -------ALI ESYQNLTRVA DYCENNYIQA TDKRKALEET ENSP00000365312/1-508 MAELQMLLEE EIPSGKRALI ESYQNLTRVA DYCENNYIQA TDKRKALEET BACU018708/1-466 ---------- ---------- ---------- -------FQA TDKRKALEET 51 100 bmy_07525T0/1-506 KAYTTQSLAS VAYQINALAN NVLQLLDIQA SQLRRMESSI NHISQTVDIH ENSBTAP00000039284/1-355 KAYTTQSLAS VAYQINALAN NVLQLLDIQA SQLRRMESSI NHISQTVDIH ENSTTRP00000002896/1-492 KAYTTQSLAS VAYQINALAN NVLQLLDIQA SQLRRMESSI NHISQTVDIH ENSP00000365312/1-508 KAYTTQSLAS VAYQINALAN NVLQLLDIQA SQLRRMESSI NHISQTVDIH BACU018708/1-466 KAYTTQSLAS VAYQINALAN NVLQLLDIQA SQLRRMESSI NHISQTVDIH 101 150 bmy_07525T0/1-506 KEKVARREIG ILTTNKNTSR THKIIAPANM ERPVRYIRKP IDYTVLDDVG ENSBTAP00000039284/1-355 KEKVARREIG ILTTNKNTSR THKIIAPANM ERPVRYIRKP IDYTVLDDVG ENSTTRP00000002896/1-492 KEKVARREIG ILTTNKNTSR THKIIAPANM ERPVRYIRKP IDYTVLDDVG ENSP00000365312/1-508 KEKVARREIG ILTTNKNTSR THKIIAPANM ERPVRYIRKP IDYTVLDDVG BACU018708/1-466 KEKVARREIG ILTTNKNTSR THKIIAPANM ERPVRYIRKP IDYTVLDDVG 151 200 bmy_07525T0/1-506 HGVK------ HGNNQPARTG TLSRTNPPTQ KPPSPPMSGR GTLGRNTPYK ENSBTAP00000039284/1-355 HGVK-WLKAK HGNNQPARTG TLSRTNPPTQ KPPSPPMSGR GTLGRNTPYK ENSTTRP00000002896/1-492 HGVKEGHKII HGNNQPARTG TLSRTNPPTQ KPPSPPMSGR GTLGRNTPYK ENSP00000365312/1-508 HGVK-WLKAK HGNNQPARTG TLSRTNPPTQ KPPSPPMSGR GTLGRNTPYK BACU018708/1-466 HGVK------ HGNNQPARTG TLSRTNPPTQ KPPSPPMSGR GTLGRNTPYK 201 250 bmy_07525T0/1-506 TLEPVKPPTV PNDYMTSPAR LGSQHSPGRT ASLNQRPRTH SGSSGGSGSR ENSBTAP00000039284/1-355 TLEPVKPPTV PNDYMTSPAR LGSQHSPGRT ASLNQRPRTH SGSSGGSGSR ENSTTRP00000002896/1-492 TLEPVKPPTV PNDYMTSPAR LGSQHSPGRT ASLNQRPRTH SGSSGGSGSR ENSP00000365312/1-508 TLEPVKPPTV PNDYMTSPAR LGSQHSPGRT ASLNQRPRTH SGSSGGSGSR BACU018708/1-466 TLEPVKPPTV PNDYMTSPAR LGSQHSPGRT ASLNQRPRTH SGSSGGSGSR 251 300 bmy_07525T0/1-506 ENSGSSSIGI PIAVPTPSPP TIGPENISVP PPSGAPPAPP LPPLLPVNTV ENSBTAP00000039284/1-355 ENSGSSSIGI PIAVPTPSPP TIGP------ ---------- ---------- ENSTTRP00000002896/1-492 ENSGSSSIGI PIAVPTPSPP TVGPENISVP PPSGAPPAPP LPLLLPVNTV ENSP00000365312/1-508 ENSGSSSIGI PIAVPTPSPP TIGPENISVP PPSGAPPAPP LAPLLPVSTV BACU018708/1-466 ENSGSSSIGI PIAVPTPSPP TIGPENISVP PPSGAPPAPP LPPLLPVNTV 301 350 bmy_07525T0/1-506 IVQYLEKYSS TSYTTAAFTL ASGHPGLEIK TVLCILMFVV FVTDFCFL-F ENSBTAP00000039284/1-355 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002896/1-492 IAA-PGSAPG SQYGTMTRQI SRHNSTTSST SSGGYRRTPS VTAQFSAQPH ENSP00000365312/1-508 IAA-PGSAPG SQYGTMTRQI SRHNSTTSST SSGGYRRTPS VTAQFSAQPH BACU018708/1-466 IAA-PGSAPG SQYGTMTRQI SRHNSTTSST SSGGYRRTPS VTAQFSAQPH 351 400 bmy_07525T0/1-506 VSFSFLYLFY FPHSVLLPPV SIAPPPPPMP QLTPQIPLTG FVARVQENIA ENSBTAP00000039284/1-355 ---------- ---------- ---------- ---------- --------VA ENSTTRP00000002896/1-492 VNGGPLY--- -----SQNSI SIAPPPPPMP QLTPQIPLTG FVARVQENIA ENSP00000365312/1-508 VNGGPLY--- -----SQNSI SIAPPPPPMP QLTPQIPLTG FVARVQENIA BACU018708/1-466 VNGGPLY--- -----SQNSI SIAPPPPPMP QLTPQIPLTG FVARVQENIA 401 450 bmy_07525T0/1-506 DSPTPPPPPP PDDIPMFDDS PPPPPPPPVD YEDEEAAVVQ YNDPYADGDP ENSBTAP00000039284/1-355 DSPTPPPPPP PDDIPMFDDS PPPPPPPPVD YEDEEAAVVQ YNDPYADGDP ENSTTRP00000002896/1-492 DSPTPPPPPP PDDIPMFDDS PPPPPPPPVD YEDEEAAVVQ YNDPYADGDP ENSP00000365312/1-508 DSPTPPPPPP PDDIPMFDDS PPPPPPPPVD YEDEEAAVVQ YNDPYADGDP BACU018708/1-466 DSPTPPPPPP PDDIPMFDDS PPPPPPPPVD YEDEEAAVVQ YNDPYADGDP 451 500 bmy_07525T0/1-506 AWAPKNYIEK VVAIYDYTKD KDDELSFMEG AIIYVIKKND DGWYEGVCNR ENSBTAP00000039284/1-355 AWAPKNYIEK ---------- ---------G KVQSSLNC-- -------CNR ENSTTRP00000002896/1-492 AWAPKNYIEK VVAIYDYTKD KDDELSFMEG AIIYVIKKND DGWYEGVCNR ENSP00000365312/1-508 AWAPKNYIEK VVAIYDYTKD KDDELSFMEG AIIYVIKKND DGWYEGVCNR BACU018708/1-466 TWAPKNYIEK VVAIYDYTKD KDDELSFMEG AIIYVIKKND DGWYEGVCNR 501 550 bmy_07525T0/1-506 VTGLFPGNYV ESIMHYTD ENSBTAP00000039284/1-355 KE-------- PAMIVF-- ENSTTRP00000002896/1-492 VTGLFPGNYV ESIMHYTD ENSP00000365312/1-508 VTGLFPGNYV ESIMHYTD BACU018708/1-466 VTGLFPGNYV ESIMHYTD