KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:30 2014 Check: 00 .. Name: ENSTTRP00000014834/1-780 Len: 939 Check: 5738 Weight: 1.00 Name: BACU009056/1-867 Len: 939 Check: 4433 Weight: 1.00 Name: ENSBTAP00000039370/1-786 Len: 939 Check: 3868 Weight: 1.00 Name: bmy_16798T0/1-574 Len: 939 Check: 7618 Weight: 1.00 Name: ENSP00000263433/1-782 Len: 939 Check: 5026 Weight: 1.00 // 1 50 ENSTTRP00000014834/1-780 MSGEDG---- ----PGAVTW VPSTTTR--- ---------- ---------- BACU009056/1-867 MSDAEEQEYD RPVVPPLIPP KIPEGERVDF DDIHRKRMEK DLLELQTLID ENSBTAP00000039370/1-786 MSDEDG---- ----PGAGPG AAAAAAR--- ---------- ---------- bmy_16798T0/1-574 MSGEDG---- ----PGAGPG AAAAAAR--- ---------- ---------- ENSP00000263433/1-782 MSGEDG---- ----PAAGPG AAAAAAR--- ---------- ---------- 51 100 ENSTTRP00000014834/1-780 ---------- ---------- ERRPEH---- ---------- ---------- BACU009056/1-867 VHFEQRKKEE EELVALKERI ERRRSERAEQ QRFRTEKERE RQAKLVEEKM ENSBTAP00000039370/1-786 ---------- ---------- ERRREQKATP ---------- ---------- bmy_16798T0/1-574 ---------- ---------- ERRREQ---- ---------- ---------- ENSP00000263433/1-782 ---------- ---------- ERRREQ---- ---------- ---------- 101 150 ENSTTRP00000014834/1-780 ---------- ---------- XXXXXXXXXX XXXXXXXXXX XX-------- BACU009056/1-867 RKEEEEAKKR AEDDAKKKKV LSNIGAHFGG YLVKAEQKRG KRQTGREAKV ENSBTAP00000039370/1-786 ---------- ---------- VSQWG--PS- ----RLPAIG ER---NSLAT bmy_16798T0/1-574 ---------- ---------- LRQWGARAG- ----AEPGPG ER---RARTV ENSP00000263433/1-782 ---------- ---------- LRQWGARAG- ----AEPGPG ER---RARTV 151 200 ENSTTRP00000014834/1-780 ---------- ---------- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009056/1-867 RVLSERKKAL NIDHMGEEQL REKAQELSDW IHHLESEKFD LMEKMKQQKY ENSBTAP00000039370/1-786 AL-------- ---------- -PEA--WRGL GHPSEAQRGG VT--QRGFGS bmy_16798T0/1-574 RF-------- ---------- -ERAAEFLAA CAGGDLDEAR LM--LREADP ENSP00000263433/1-782 RF-------- ---------- -ERAAEFLAA CAGGDLDEAR LM--LRAADP 201 250 ENSTTRP00000014834/1-780 XXXXXXNPAA P----SPGRG ALYSTYADGI SALHQACIDE NLEVVRFLVE BACU009056/1-867 EINVLYNRIS HAQKFGPCRG ----SCLQGM RGPDQACIDE NLEVVRFLVE ENSBTAP00000039370/1-786 GLGGPGDPSS PAWPWAPGSA VFPPGTRQGC ATPPQACIDE NLEVVRFLVE bmy_16798T0/1-574 GPGAELDPAA P----PPARA VLDSTNADGI SALHQACIDE NLEVVRFLVE ENSP00000263433/1-782 GPGAELDPAA P----PPARA VLDSTNADGI SALHQACIDE NLEVVRFLVE 251 300 ENSTTRP00000014834/1-780 QGATVNQADN EGWTPLHVAA SCGYLDIARY LLSHGANIAA VNSDGDLPLD BACU009056/1-867 QGATVNQADN EGWTPLHVAA SCGYLDIARY LLSHGANIAA VNSDGDLPLD ENSBTAP00000039370/1-786 QGATVNQADN EGWTPLHVAA SCGYLDIARY LLSHGANIAA VNSDGDLPLD bmy_16798T0/1-574 QGATVNQADN EGWTPLHVAA SCGYLDIARY LLSHGANIAA VNSDGDLPLD ENSP00000263433/1-782 QGATVNQADN EGWTPLHVAA SCGYLDIARY LLSHGANIAA VNSDGDLPLD 301 350 ENSTTRP00000014834/1-780 LAESDAMEGL LKVEIARRGV DVEAAKRAEE ELLLHDTRCW LNGGAMPEAR BACU009056/1-867 LAECDAVEGL LKVEIARRGV DVEAAKRAEE ELLLHDTRCW LNGGAMPEAR ENSBTAP00000039370/1-786 LAESDAMEAL LKAEIARRGV DVEAAKRAEE ELLLHDTRCW LNGGAMPEAR bmy_16798T0/1-574 LAESDAVEGL LKGE----GV DVEAAKRAEE ELLLHDTRCW LNGGAMPEAR ENSP00000263433/1-782 LAESDAMEGL LKAEIARRGV DVEAAKRAEE ELLLHDTRCW LNGGAMPEAR 351 400 ENSTTRP00000014834/1-780 HPRTGASALH VAAAKGYIEV MRLLLQAGYD PELRDGDGWT P--HAAHWGV BACU009056/1-867 HPRTGASALH VAAAKGYIEV MRLLLQAGYD PELRDGDGWT PLQPAAHWGV ENSBTAP00000039370/1-786 HPRTGASALH VAAAKGYIEV MRLLLQAGYD PELRDGDGWT PLHAAAHWGV bmy_16798T0/1-574 HPRTGASALH VAAAKGYIEV MRLLLQAGYD PELRDGDGWT PLHAAAHWGV ENSP00000263433/1-782 HPRTGASALH VAAAKGYIEV MRLLLQAGYD PELRDGDGWT PLHAAAHWGV 401 450 ENSTTRP00000014834/1-780 EDACCLLAEH GGGMDSLTHA GQRPCDLADE EVLSLLEELA RKQEDXXXXX BACU009056/1-867 EDACRLLAEH GGGMDSLTHA GQGPCDLADE EVLSLLEELA RKQEDLRNQK ENSBTAP00000039370/1-786 EDACRLLAEH GGGMDSLTHA GQRPCDLADE EVLSLLEELA RKQEDLRNQK bmy_16798T0/1-574 EDACRLLAEH GGGMDSLTHA GQRPCDLADE EVLSLLEELA RKQEDLRNQK ENSP00000263433/1-782 EDACRLLAEH GGGMDSLTHA GQRPCDLADE EVLSLLEELA RKQEDLRNQK 451 500 ENSTTRP00000014834/1-780 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU009056/1-867 EASQSRGQEP QGPSSSKHRR SSVCRLSSRE KISLQDLSKE RRPGGAGGPP ENSBTAP00000039370/1-786 EAAQSRGPEP QGPSSSKHRR SSVCRLSSRE KISLQDLSKE RRPGGAGGTP bmy_16798T0/1-574 EASQSRGQEP QGPSSSKHRR SSVCRLSSRE KISLQDLSKE RRPGGAGGPP ENSP00000263433/1-782 EASQSRGQEP QAPSSSKHRR SSVCRLSSRE KISLQDLSKE RRPGGAGGPP 501 550 ENSTTRP00000014834/1-780 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXTPD EAPFSTRFGL BACU009056/1-867 IRDEDEGEEG PSEPPPAESR TLNGVSSPPP SSPRSPMTPD EAPFSTRFGL ENSBTAP00000039370/1-786 IRDEDEGEEA PSEPPPAECR ALNGVSSPPP CSPGSPVTPE EAPFSRRFGL bmy_16798T0/1-574 IRDEDEGEEG PSEPPPAESR TLNGVSSPPP SSPRSPMTPD EAPFSTRFGL ENSP00000263433/1-782 IQDEDEGEEG PTEPPPAEPR TLNGVSSPPH PSPKSPVQLE EAPFSRRFGL 551 600 ENSTTRP00000014834/1-780 QKTGSSGALG PAERRGAEGA SGAGLQRSAS SSRLEGTYTQ AREPRLARIT BACU009056/1-867 QKTGSSGALG PAERRGAEGA PGAGLQRSAS SSRLEGTSTQ AREPRLARIT ENSBTAP00000039370/1-786 QKTGSSGALG PTDWRGAEGT PGAGLQRSAS SSRLEGASTQ GREPRLARVP bmy_16798T0/1-574 QKTGSSGALG PAERRGAEGA PGAGLQRSAS SSRVEGTSTQ AREPRLARIT ENSP00000263433/1-782 LKTGSSGALG PPERRTAEGA PGAGLQRSAS SSWLEGTSTQ AKELRLARIT 601 650 ENSTTRP00000014834/1-780 PTPSRKVPES SAPSEISRPP PPLGNSTHAS RIPEPESPVK PNVPVASAAP BACU009056/1-867 PTPSRKVPES S--------- ---------A PIPEPESPVK PNVPVASAAP ENSBTAP00000039370/1-786 PTPSQKVPEP SCPSEISRPP PPLGNSTPPP RTPEPESPVK PNVPVASAAP bmy_16798T0/1-574 PTPSRTVPES S--------- ---------A PIPEPESPVK PNVPVASAAP ENSP00000263433/1-782 PTPSPKLPEP SVLSEVTKPP PCLENSSPPS RIPEPESPAK PNVPTASTAP 651 700 ENSTTRP00000014834/1-780 PADSRDRRRS YQMPVRDEES ESQRKARSRL MRQSRR---- ---------- BACU009056/1-867 PADSRDRRRS YQMPVRDEES ESQRKARSRL MRQSRRFMCA QLPNQVLESI ENSBTAP00000039370/1-786 PADSRDRRRT YQMPVRDEES ESQRKARSRL MRQSRR---- ---------- bmy_16798T0/1-574 PADSRDRRRS YQMPVRDEES ESQRKARSRL MRQSRR---- ---------- ENSP00000263433/1-782 PADSRDRRRS YQMPVRDEES ESQRKARSRL MRQSRR---- ---------- 701 750 ENSTTRP00000014834/1-780 ---------- --STQGVTLT DLKEAEKAAG KAPEPEKSCL QSLDPSRRPR BACU009056/1-867 SIIDTPGILS GAKQRGVTLT DLKEAEKAAG KAPEPEKSCL QSLDPSRRPR ENSBTAP00000039370/1-786 ---------- --STQGVTLT DLKEAEKAAG KAPEAEKSSV QSLDPSRRPR bmy_16798T0/1-574 ---------- --STQVWD-- ---------- ---------- GGLDPW---- ENSP00000263433/1-782 ---------- --STQGVTLT DLKEAEKAAG KAPESEKPA- QSLDPSRRPR 751 800 ENSTTRP00000014834/1-780 VPGVENSDGP AQRAEAPDGQ GQGPQAAEEH RRVSKEWRGP AEGEEAEPAP BACU009056/1-867 VPGVENSDGP AQRAEAPDGR GQGPQAPEEH RRVSKERRGP AE-------- ENSBTAP00000039370/1-786 VPGVESTDGP AQRAEAPDGQ GQGPQAAREP RRVGKEWRGP AEGEEAEPAP bmy_16798T0/1-574 ---------- -----TPESE GGGP------ ---------- ---------- ENSP00000263433/1-782 VPGVENSDSP AQRAEAPDGQ GPGPQAAREH RKVGKEWRGP AEGEEAE--P 801 850 ENSTTRP00000014834/1-780 ADRSPGSSTP EGGPSSRRQ- --RDLNPEPE PESEEPDGGF TKLYAELRSE BACU009056/1-867 ---------- ---------- ---------- ---------- --LYAELRSE ENSBTAP00000039370/1-786 ADRSPETSTP EGDPSSRRQ- --RDLNPDPE PEPDEPDGGF RKLYAELRSE bmy_16798T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSP00000263433/1-782 ADRSQESSTL EGGPSARRQR WQRDLNPEPE PESEEPDGGF RTLYAELRRE 851 900 ENSTTRP00000014834/1-780 NERLREALTE TTLQLAQLKV ELERATQRQE RFAERPALLE LERFERRALE BACU009056/1-867 NERLREALTE TTLQLAQLKV ELERATQRQE RFAERPALLE LERFERRALE ENSBTAP00000039370/1-786 NERLREALTE TTLQLAQLKV ELERATQKQE RFAERPALLE LERFERRALE bmy_16798T0/1-574 ---------- ---------- ---------- ---------- ---------- ENSP00000263433/1-782 NERLREALTE TTLRLAQLKV ELERATQRQE RFAERPALLE LERFERRALE 901 950 ENSTTRP00000014834/1-780 RKAAELEEEL KALSDLRADN QRLKDENAAL IRVISKLSK BACU009056/1-867 RKAAELEEEL KALSDLRADN QRLKDENAAL IRVISKLSK ENSBTAP00000039370/1-786 RKAAELEEEL KALSDLRADN QRLKDENAAL IRVISKLSK bmy_16798T0/1-574 ---GGLDSVL KGLGP----- ---------- ----ESWTP ENSP00000263433/1-782 RKAAELEEEL KALSDLRADN QRLKDENAAL IRVISKLSK