KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:31 2014 Check: 00 .. Name: bmy_04120T0/1-341 Len: 429 Check: 9916 Weight: 1.00 Name: ENSBTAP00000039371/1-326 Len: 429 Check: 5523 Weight: 1.00 Name: ENSP00000367878/1-337 Len: 429 Check: 588 Weight: 1.00 Name: ENSTTRP00000013405/1-337 Len: 429 Check: 375 Weight: 1.00 // 1 50 bmy_04120T0/1-341 ----MRGGAP ---------A TAALRDGVCS RTLSRADPKR YPLL------ ENSBTAP00000039371/1-326 MLSPERLALP DYEYLAQRHV LTYVEDAVCQ LLENKEDISQ YGIARFFTEY ENSP00000367878/1-337 MLSPERLALP DYEYLAQRHV LTYMEDAVCQ LLENREDISQ YGIARFFTEY ENSTTRP00000013405/1-337 MLSLERLALL DYEYLSQRHV LTYMEDAVCQ LLENKEDISQ YGIARFFTEY 51 100 bmy_04120T0/1-341 ---------- ------FVPA ---------- --------VS QHGGARSHSE ENSBTAP00000039371/1-326 FNSVCQGTHI LFREFSFIQA TPHNRASFLR AFWRCFRTVG KNGDLLTMRE ENSP00000367878/1-337 FNSVCQGTHI LFREFSFVQA TPHNRVSFLR AFWRCFRTVG KNGDLLTMKE ENSTTRP00000013405/1-337 FNSVCQGTHI LFREFSFIQA TPHNRASFLR AFWRCFRTVG KNGDLLTMRE 101 150 bmy_04120T0/1-341 ---------- ---------G PWIVLMDDAM DCLMSFSDFL FAFQIQFYYS ENSBTAP00000039371/1-326 YHCLLQLLCP DFPLELTQKA ARIVLMDDAM DCLMSFSDFL FAFQIQFYYS ENSP00000367878/1-337 YHCLLQLLCP DFPLELTQKA ARIVLMDDAM DCLMSFSDFL FAFQIQFYYS ENSTTRP00000013405/1-337 YHCLLQLLCP DFPLELTQKA ARIVLMDDAM DCLMSFSDFL FAFQIQFYYS 151 200 bmy_04120T0/1-341 EFLESVAAIY QDLLSGKNPN TVIVPTSSSG QHRPRPTLGE ASMLEGVEAP ENSBTAP00000039371/1-326 EFLESVAAIY QDLLSGKNPN TVIVPTSSSG QHRHRPSTGE AGTPEGVEAS ENSP00000367878/1-337 EFLDSVAAIY EDLLSGKNPN TVIVPTSSSG QHRQRPALGG AGTLEGVEAS ENSTTRP00000013405/1-337 EFLESVAAIY QDLLSGKNPN TVIVPTSSSG QHRQRPTLGE ASMLEGVEAS 201 250 bmy_04120T0/1-341 LFCQCLENLC DRHKYSCPPP ALVKEVLSNV QRLTFYGFLV ALSKHHGINQ ENSBTAP00000039371/1-326 LFYQCLENLC DRHKYSCPPP ALVKEVLSNV QRLTFYGFLV ALSKHHGINQ ENSP00000367878/1-337 LFYQCLENLC DRHKYSCPPP ALVKEALSNV QRLTFYGFLM ALSKHRGINQ ENSTTRP00000013405/1-337 LFYQCLENLC DRHKYSCPPP ALVKEVLSNV QRLTFYGFLV ALSKHHGINQ 251 300 bmy_04120T0/1-341 ALGALPDKGD LMHDPALDEE LERLL----- --------AQ IPGLVNSVTA ENSBTAP00000039371/1-326 ALGALPDKGD LMHDPAMDEE LERLVLRWRP HRSSRQHRAK EPGAFGYQRR ENSP00000367878/1-337 ALGALPDKGD LMHDPAMDEE LERLLLPF-- -----FRLAQ VPGLVNSVTA ENSTTRP00000013405/1-337 ALGALPDKGD LMHDPALDEE LERLLLPF-- -----FRLAQ IPGLVNSVTA 301 350 bmy_04120T0/1-341 G---PEASCL PARTPPRVGS PWRPLHHARK VDAESDGSTE ETDECTLLKS ENSBTAP00000039371/1-326 DKLEALQTVP PASAPTPCLY QWEPRE---- ---------- ---------- ENSP00000367878/1-337 S---PEASCL PSRTPPRVGS PWRPLHHSRK VDGESDGSTE ETDESET--- ENSTTRP00000013405/1-337 G---PEASCL PARTPPRVGS PWRPLHHARK VDAESDGSTE ETDESET--- 351 400 bmy_04120T0/1-341 LACLQPYGSV GELKGQLIPA LSSTCHRVVR SRLHRTSQQH RAEEPGAFGF ENSBTAP00000039371/1-326 ---------- ---------- ---------- ---------- ---------- ENSP00000367878/1-337 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013405/1-337 ---------- ---------- ---------- ---------- ---------- 401 450 bmy_04120T0/1-341 QRRDKLEAPV TVPSALAPTP YPRWWEPRE ENSBTAP00000039371/1-326 ---------- ---------- --------- ENSP00000367878/1-337 ---------- ---------- --------- ENSTTRP00000013405/1-337 ---------- ---------- ---------