KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:33 2014 Check: 00 .. Name: BACU007631/1-1371 Len: 1643 Check: 6526 Weight: 1.00 Name: bmy_09554T0/1-1123 Len: 1643 Check: 1924 Weight: 1.00 Name: ENSTTRP00000003607/1-1592 Len: 1643 Check: 6644 Weight: 1.00 Name: ENSP00000316891/1-1083 Len: 1643 Check: 5703 Weight: 1.00 Name: ENSBTAP00000039445/1-1057 Len: 1643 Check: 6114 Weight: 1.00 // 1 50 BACU007631/1-1371 ---------- ---------- ---------- ---------- ---------- bmy_09554T0/1-1123 MGGKIVKLQG EL-------- -----DNFKT CKVIAGETVK GMDDFRLLPA ENSTTRP00000003607/1-1592 ---------- ---------- ---------- --QVTGRSF- GDKDFR---- ENSP00000316891/1-1083 MACPALGLEA LQPLQPEPPP EPAFSEAQKW IEQVTGRSF- GDKDFR---- ENSBTAP00000039445/1-1057 MACPVLGLEA LQPLQPEPPP EPAFSEAQKW IEQVTGRSF- GDKDFR---- 51 100 BACU007631/1-1371 ---------- ---------- ---------- ---------- ---------- bmy_09554T0/1-1123 HCQSTRGVVK DTDIVNDDED QNPPQLSIVS ATLPGQSKLD NIILFLRGCK ENSTTRP00000003607/1-1592 -TGLENGILL -CELLNAIKP GLVKKINRLP TPIAG---LD NIILFLRGCK ENSP00000316891/1-1083 -TGLENGILL -CELLNAIKP GLVKKINRLP TPIAG---LD NIILFLRGCK ENSBTAP00000039445/1-1057 -TGLENGILL -CELLNAIKP GLVKKINRLP TPIAG---LD NIILFLRGCK 101 150 BACU007631/1-1371 ---------- ---------- ---------- ---------- -------MTC bmy_09554T0/1-1123 ELGLKESQLF DPSDLQDTSN R--------- -----VLVTI YWLGKAANSC ENSTTRP00000003607/1-1592 ELGLKESQLF DPSDLQDTSN RVTVXXXXXX XXXXXVLVTI YWLGKAANSC ENSP00000316891/1-1083 ELGLKESQLF DPSDLQDTSN RVTVKSLDYS RKLKNVLVTI YWLGKAANSC ENSBTAP00000039445/1-1057 ELGLKESQLF DPSDLQDTSN RVAVKSLDYS RKLKNVLVTI YWLGKAANSC 151 200 BACU007631/1-1371 ---------- ---------- ---------- ---------- ---------- bmy_09554T0/1-1123 ASYSGTTLNL KEFEGLLAQM RKETDDVESP KRSIRDSGYI DCWDSERSDS ENSTTRP00000003607/1-1592 ASYSGTTLNL KEFEGLLAQM RKETDDVESP KRSIRDSGYI DCWDSERSDS ENSP00000316891/1-1083 TSYSGTTLNL KEFEGLLAQM RKDTDDIESP KRSIRDSGYI DCWDSERSDS ENSBTAP00000039445/1-1057 ASYSGTTLNL KEFEGLLAQM RKETDDIESP KRSIRDSGYI DCWDSERSDS 201 250 BACU007631/1-1371 ---------- ---------- ---------- -LRGG----- ---------- bmy_09554T0/1-1123 LSPPRHGRDD SFDSLDSFGS RSRQTPSPDV VLRGSSDGRG SDSESDLPHR ENSTTRP00000003607/1-1592 LSPPRHGRDD SFDSLDSFGS RSRQTPSPDV VLRGSSDGRG SDSESDLPHR ENSP00000316891/1-1083 LSPPRHGRDD SFDSLDSFGS RSRQTPSPDV VLRGSSDGRG SDSESDLPHR ENSBTAP00000039445/1-1057 LSPPRHGRDD SFDSLDSFGS RSRQTPSPDV VLRGSSDGRG SDSESDLPHR 251 300 BACU007631/1-1371 -LPTVSQNQ- ---------- -------QCL LTSTSPTKAT RRPTSXXXXX bmy_09554T0/1-1123 KLPDVKKDDM SARRTSHGEP KSAVPFNQYL PNKSNQTAYV PAPLRKKKAE ENSTTRP00000003607/1-1592 KLPDVKKDDM SARRTSHGEP KSAVPFNQYL PNKSNQTAYV PAPLRKKKAE ENSP00000316891/1-1083 KLPDVKKDDM SARRTSHGEP KSAVPFNQYL PNKSNQTAYV PAPLRKKKAE ENSBTAP00000039445/1-1057 KLPDVKKDDM SARRTSHGEP KSAVPFNQYL PNKSNQTAYV PAPLRKKKAE 301 350 BACU007631/1-1371 XXXXXXXXXX ATSPLGGERP FSYPETIEEE GSEVGSPCEE DPVSRMDPGG bmy_09554T0/1-1123 REEYRKSWST ATSPLGGERP FSYPETIEEE GSEVGSPCEE DPVSRMDPGG ENSTTRP00000003607/1-1592 REEYRKSWST ATSPLGGERP FSYPETIEEE GSEVGSPCEE DPVRRMDPGG ENSP00000316891/1-1083 REEYRKSWST ATSPLGGERP F--------- ---------- ---------- ENSBTAP00000039445/1-1057 REEYRKSWST ATSPLGGERP F--------- ---------- ---------- 351 400 BACU007631/1-1371 KPPGGGLELP AGSGKEQVSP EGAAVAPAPK SEEEDAAEIR KRRRLEQAGI bmy_09554T0/1-1123 KPPGGGLELP TGSGKEQPSP EGAAVAPAPK SEEEDAAEIR KRRRLEQAGI ENSTTRP00000003607/1-1592 KPPGGGLELP TGSGKAQPPP EGAAVAPAPK SEEEDAAEIQ KRRRLEQAGI ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 401 450 BACU007631/1-1371 KVMPAAQRFA SQKQLSDEKE AVRDIILRKE NPFLIHQHGR DSESEDEVAC bmy_09554T0/1-1123 KVMPAAQRFA R--------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 KVMPAAQRFA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 451 500 BACU007631/1-1371 RLPDLEKDDF AARRARRNQT KPMVPLNQLL YGPYRKKEAE KSNGSKQPSK bmy_09554T0/1-1123 ---------- ---RARMNQN KPMVPLNQLL YGPYRKKEAE KSDGSKQPSK ENSTTRP00000003607/1-1592 XXXXXEKDDF AA-RARMNQT KPMVPLNQLL YGPYRKKEAE KSDGSKQPSK ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 501 550 BACU007631/1-1371 GISEKKSLEH KRNQGQTEEV KSRVTCIVRA LESGPAEEGL RQVPDLHKDD bmy_09554T0/1-1123 GISEKKSLEH KRNQGQTEEV KSRVTCIVRA LQSGPAEEGL RQVPDLHKDD ENSTTRP00000003607/1-1592 GISEKKSLEH KRNQGQTEEV KSRVTCIVRA QESEPAEEGL RQVPDLHKDD ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 551 600 BACU007631/1-1371 LAQRRIQGRL GPQREAPSFV TVANITEADR ETWERLKVSG KTRDGDVEHT bmy_09554T0/1-1123 LAQRRIQGRF GPHREAPSFV TVANITEADR ETWERLKVSG KTRDGDVEHT ENSTTRP00000003607/1-1592 LAQRRIQGRL GPHREAPSFV AVANITEADR ETWERLKVSG KKRDGDVEHT ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 601 650 BACU007631/1-1371 CAPEPSPEIK AETAIRDDFA SRKARAYKKA SSPRQKFVHF GPVTEIDQQT bmy_09554T0/1-1123 CAPEPSPEIK AETAIRDDFA SRKARAYKKA SSPRQKFVHF GPVTEIDQQT ENSTTRP00000003607/1-1592 CAPEPSPEIK AETALRDDFA SRKARAYKKA SSPRQKFVHF GPVTEIDQQT ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 651 700 BACU007631/1-1371 WKRLSIGRAG PKEDAEEVIS HSREIQTYPV PPALAAMSSL QEDHRLNPQN bmy_09554T0/1-1123 WKRLSIGRAG PKEDAEEVIS HSRKIQTYSV PPALAAMS-- ---------- ENSTTRP00000003607/1-1592 WKRLSIGRAG PKEDAEEVIS HSRKIQTYSV SPALAAMSSL QEDHRLNPQN ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 701 750 BACU007631/1-1371 DCRIVTSGID DRCKRVCQLA VVPEVQEEHS CSL------- --VTCKQLPQ bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- --ITCKQLPQ ENSTTRP00000003607/1-1592 DCRIXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXTCKQLPQ ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 751 800 BACU007631/1-1371 DGKEATEGVV QRGSETVPKA ERSEESGQPL SCPLTSEWEA SEREEKSEKM bmy_09554T0/1-1123 DGKEATEGVV QRGSETVPKA ERSEESGQPL SCPLTSEWEA SEREEKSEKM ENSTTRP00000003607/1-1592 DGKEATEGVV QRGSETVPKA ERSEESGQPL SCPLTSEWEA SEREEKSEKM ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 801 850 BACU007631/1-1371 TAPAWSGSGL KGQRKLYDSQ KDDVMARRTG MSLRHIGSKL NQFRPVPFAK bmy_09554T0/1-1123 TAPAWSGSGL KGQRKLYDSQ KDDVMARRTG MSLRHIESKL KQFRPVPFAK ENSTTRP00000003607/1-1592 TAPAWSGSGL KGPRKLYESQ KDDAMARRTG ISLRHLGSKL NQFHPVPSAK ENSP00000316891/1-1083 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039445/1-1057 ---------- ---------- ---------- ---------- ---------- 851 900 BACU007631/1-1371 QRIVEESAKG PPIKDKRYGP RTPVSDDAES TSMFDMRCEE EAKVQPHSRA bmy_09554T0/1-1123 QRIVEESAKG PPIKDKRYGP RTPVSDDAES TSMFDMRCEE EAKVQPHSRA ENSTTRP00000003607/1-1592 QRIVEGFAKG PPIKD-KYGP RTPVSDDAES NTMFNMRCAE DALVLPPYVN ENSP00000316891/1-1083 ---------- ------RYGP RTPVSDDAES TSMFDMRCEE EAAVQPHSRA ENSBTAP00000039445/1-1057 ---------- ------RYGP RTPVSDDAES TSMFDMRCEE EAAVQPHSRA 901 950 BACU007631/1-1371 RQEQLQLINN QLREEDDKWQ DDLARWKSRR RSASQDLIKK EEERKKMEKL bmy_09554T0/1-1123 RQEQLQLINN QLREEDDKWQ DDLARWKSRR RSASQDLIKK EEERKKMEKL ENSTTRP00000003607/1-1592 RQEQLQLINN HVREEDDKWI DDLARWKSRR RSASHDLIKK EEE-KKMEKL ENSP00000316891/1-1083 RQEQLQLINN QLREEDDKWQ DDLARWKSRR RSVSQDLIKK EEERKKMEKL ENSBTAP00000039445/1-1057 RQEQLQLINS QLREEDDKWQ DDLARWKSRR RSASQDLIRK EEERKKMEKL 951 1000 BACU007631/1-1371 LAGEDGTSER RKSIKTYREI VQEKERRERE LHEAYKNARS QEEAEGILQQ bmy_09554T0/1-1123 LAGEDGTSER RKSIKTYREI VQEKERRERE LHEAYKNARS QEEAEGILQQ ENSTTRP00000003607/1-1592 LAGEDGMSER RKSIK-YREI VQEKERRERE LHEAYKNARS QEEAERILQQ ENSP00000316891/1-1083 LAGEDGTSER RKSIKTYREI VQEKERRERE LHEAYKNARS QEEAEGILQQ ENSBTAP00000039445/1-1057 LAGEDGTRER RKSIKTYREI VQEKERRERE LHEAYKNART QEEAEGILQQ 1001 1050 BACU007631/1-1371 YIERFTISEA VLERLEMPKI LERSHSTEPN LSSFLNDPNP MKYLRQQSLS bmy_09554T0/1-1123 YIERFTISEA VLERLEMPKI LERSHSTEPN LSSFLNDPNP MKYLRQQSLS ENSTTRP00000003607/1-1592 YIERFTISEA VLERLEMPKI LERSHSTEPN LSSFLNDPNP MKYLRQQSLS ENSP00000316891/1-1083 YIERFTISEA VLERLEMPKI LERSHSTEPN LSSFLNDPNP MKYLRQQSLP ENSBTAP00000039445/1-1057 YIERFTISEA VLERLEMPKI LERSHSTEPN LSPFLSDPNP MKYLRQQSLP 1051 1100 BACU007631/1-1371 PPKFTATVET TIARTSVLDA SMSAGSGSPS KTVTPKAVPM LTPKPYSQPK bmy_09554T0/1-1123 PPKFTATVET TIARTSVLDA SMSAGSGSPS KTVTPKAVPM LTPKPYSQPK ENSTTRP00000003607/1-1592 PPKFTATVET TIARTSVLDA SMSAGSGSPS KTVTPKAVPM LTPKPYSQPK ENSP00000316891/1-1083 PPKFTATVET TIARASVLDT SMSAGSGSPS KTVTPKAVPM LTPKPYSQPK ENSBTAP00000039445/1-1057 PPKFTATVET TIARPSVLDA SMSAGSGSPS KTVSPKAVPM LTPKPYSQPK 1101 1150 BACU007631/1-1371 NSQEVLKTFK VDGKVTMNGE TVHGDEEEKE RECPTVALSP SLTKSQMFEG bmy_09554T0/1-1123 NSQEVLKTFK VDGKVTMNGE TVHVDEEEKE RECPTVTLAP SLTKSQMFEG ENSTTRP00000003607/1-1592 NSQEVLKTFK VDG-VTMNGE TVHVDEEEKE RECPPVALAP SLTKSQMFEG ENSP00000316891/1-1083 NSQDVLKTFK VDGKVSVNGE TVH-REEEKE RECPTVAPAH SLTKSQMFEG ENSBTAP00000039445/1-1057 NSQEVLKTFK VDGKVTMNGE TTHGDEEEKE RECPTVALAP SLTKSQMFEG 1151 1200 BACU007631/1-1371 VTRVHGSPME LKQDNSSIEI NIKKPSSLPQ ELTATTEETE TNSQEDENGG bmy_09554T0/1-1123 VARLHXSPME LKQDNSSIEI NIKKPSSLPQ ELT------- ---------- ENSTTRP00000003607/1-1592 VARVHGSPME LKQDNSSIEI NIKKPSSLPQ ELTATTEETE TNSQEDENDG ENSP00000316891/1-1083 VARVHGSPLE LKQDNGSIEI NIKKPNSVPQ ELAATTEKTE PNSQEDKNDG ENSBTAP00000039445/1-1057 EARVHGSPVE LKQDSNSIEI NIKKPSSLPQ ELTATTEETE ANSREDENDG 1201 1250 BACU007631/1-1371 EKTEKGNTEV ASSEPQYFTS TVTRSSPTVA FVELSSSPQV KNEVPEEKDQ bmy_09554T0/1-1123 -----GNSRI AEER------ --TQNNIRFA YLEYKTSSR- ---------R ENSTTRP00000003607/1-1592 EKTEKGNTEV ASSEPQCFTS TVTRSSPTVA FVELSSSPQV KNEVPEEKDQ ENSP00000316891/1-1083 GKSRKGNIEL ASSEPQHFTT TVTRCSPTVA FVEFPSSPQL KNDVSEEKDQ ENSBTAP00000039445/1-1057 EEAEKGNTEV APSEPQLFTT TVTRSSPTVA FVELSPSPQL KNEVPEEKEQ 1251 1300 BACU007631/1-1371 KKAENEMSGK VELVLSQKVV KPKSPEPEAT LTFPFLDKMP ESSQLPLPNL bmy_09554T0/1-1123 LHFFLDLSPG FVLVL---LI KP-------- ---------- ---QLSVPQI ENSTTRP00000003607/1-1592 XXXXXXXXXX XXXXXXXXVV KPKSPEPEAT LTFPFLDKMP ESSQLPLPNL ENSP00000316891/1-1083 KKPENEMSGK VELVLSQKVV KPKSPEPEAT LTFPFLDKMP EANQLHLPNL ENSBTAP00000039445/1-1057 KKPENEMSGK VELVLSQKVV KPKSPEPEAT LTFPFLDKMP ETNQSPLPNL 1301 1350 BACU007631/1-1371 SSQVDTPSSE KSPVTTP-LK LWAWDPEEER RRQEKWQQEQ ERLLQERYQK bmy_09554T0/1-1123 QAA------- ---------- FWG------- ---------- ---------- ENSTTRP00000003607/1-1592 SSQVDSPSSE KSPVTTP-LK LWAWDPEEER RRQEKWQQEQ ERLLQERYRK ENSP00000316891/1-1083 NSQVDSPSSE KSPVMTPQFK FWAWDPEEER RRQEKWQQEQ ERLLQERYQK ENSBTAP00000039445/1-1057 NSQVDSPSSE KSPVTTPQFK FWAWDPEEER RRQEKWQQEQ ERLLQERYQK 1351 1400 BACU007631/1-1371 EQDKLKEEWE KAQKEVEEEE RRYYEEERKI IEDTVVPFTM SSSSADQLST bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 EQDKLKEEWE KAQKEVEEEE RRYYEEERKI IEDTVVPFTI SSSSADQLST ENSP00000316891/1-1083 EQDKLKEEWE KAQKEVEEEE RRYYEEERKI IEDTVVPFTV SSSSADQLST ENSBTAP00000039445/1-1057 EQDKLKEEWE KAQKEVEEEE RRYYEEERKI IEDTVVPFTV SSSSADQLST 1401 1450 BACU007631/1-1371 SSSVTEGSGT MNKMDLENCR EEEQKTRQKK PFQGDNGGSL LKTKEGDPLE bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 SSSVTEGSGT MNKMDLENCR EEEQKTRQKK PFQGDNSGSL LKTKEGDPLE ENSP00000316891/1-1083 SSSMTEGSGT MNKIDLGNCQ DEKQDRRWKK SFQGDDSDLL LKTRESDRLE ENSBTAP00000039445/1-1057 SSSVTEGSGT VNKMDLENCC EEEQETRQRR PLQEDNSDSL LKTREGDPLE 1451 1500 BACU007631/1-1371 EKGSLTQGVL THSENPALKG IYQDLQLDTE AGASPCGMNP QLAQDPSQNQ bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 EKGSLTQGVL THSENPALKG IYQDLQLDSE AGASPCGMNP QLAQDPSRNQ ENSP00000316891/1-1083 EKGSLTEGAL AHSGNPVSKG VHEDHQLDTE AGAPHCGTNP QLAQDPSQNQ ENSBTAP00000039445/1-1057 EKGSLTQEVL THSENPASEG IY--HQLDTE AGAPQCGVNP QLAQDPSQNQ 1501 1550 BACU007631/1-1371 QVSNPPMHIL EDVKPKTLPL DKSINHQIES PSERRKQSPR ENFQAGHLSP bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 QVSNPPMHIL EDVKPKTLPL DKSINHQIES PSERRKKSPR ENFQAGHLSP ENSP00000316891/1-1083 QTSN-PTHSS EDVKPKTLPL DKSINHQIES PSERRKKSPR EHFQAGPFSP ENSBTAP00000039445/1-1057 QVSNPPMHIL EDVKPKTLPL DKSINHQIES PSERRK---- ---------- 1551 1600 BACU007631/1-1371 CSSTPPGQSP NRYKRSVSGK KLCSSCGLPL GKGAAMIIET LNLYFHIQCF bmy_09554T0/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003607/1-1592 CSSTPPGQSP N---RSISGK KLCSSCGLPL GKGAAMIIET LNLYFHIQCF ENSP00000316891/1-1083 CSPTPPGQSP N---RSISGK KLCSSCGLPL GKGAAMIIET LNLYFHIQCF ENSBTAP00000039445/1-1057 ---------- -----SISGK KLCSSCGLPL GKGAAMIIET LNLYFHIQCF 1601 1650 BACU007631/1-1371 RCGICKGQLG DAVSGTDVRI RNGILNCNDC YTRSRSAGQP TTL bmy_09554T0/1-1123 RIGLC----- ---SALSVLT RG-------- ---------- --- ENSTTRP00000003607/1-1592 RCGICKGQLG DAVSGTDVRI RNGLLNCNDC YMRSRSADQP TTL ENSP00000316891/1-1083 RCGICKGQLG DAVSGTDVRI RNGLLNCNDC YMRSRSAGQP TTL ENSBTAP00000039445/1-1057 KCGICKGQLG DAVSGTDVRI RNGLLNCNDC YMRSRSAGQP TTL