KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:35 2014 Check: 00 .. Name: ENSP00000304226/1-1215 Len: 1216 Check: 9525 Weight: 1.00 Name: ENSTTRP00000015511/1-1211 Len: 1216 Check: 5356 Weight: 1.00 Name: ENSBTAP00000039475/1-1216 Len: 1216 Check: 9344 Weight: 1.00 Name: bmy_16586T0/1-791 Len: 1216 Check: 3407 Weight: 1.00 Name: BACU008886/1-1214 Len: 1216 Check: 6181 Weight: 1.00 // 1 50 ENSP00000304226/1-1215 MASQVLVYPP YVYQTQSSAF CSVKKLKVEP SSCVFQERNY PRTYVNGRNF ENSTTRP00000015511/1-1211 MASQVLVYPP YIYQTQSSAF CSVKKLKVEP SSCVFQERNY PRTYVNGRNV ENSBTAP00000039475/1-1216 MASQVLVYPP YIYQTQSSAF CSVKKLRVEP SSCVFQERNY PRTYVNGRNV bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 MASQVLVYPP YIYQTQSSAF CSVKKLKVEP SSCVFQERNY PRTYVNGRNV 51 100 ENSP00000304226/1-1215 GNSHPPTKGS AFQTKIPFNR PRGHNFSLQT SAVVLKNTAG ATKVIAAQAQ ENSTTRP00000015511/1-1211 GNSHPPTKGS AFQTKIPFNR PRGHNLSLQT SAVVLKSTAG ATKVIAAQAQ ENSBTAP00000039475/1-1216 GNSHPPTKGS AFQTKIPFNR PRGHNLSLQT SAVVIKNPAG ATKVIAAQAP bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 GNSHPPAKGS AFQTKIPFNR PRGHNLSLQT SAVVLKSTAG ATKVIAAQAQ 101 150 ENSP00000304226/1-1215 QAHVQAPQIG AWRNRLHFLE GPQRCGLKRK SEELDNHSSA MQIVDELSIL ENSTTRP00000015511/1-1211 QTQVEAPQIG AWRHRLNFLE GPQRCGLKRK SEELDNH-SA MQIVDELSIL ENSBTAP00000039475/1-1216 QTQVEAPQIG AWRHRFSFLE GPQRCGLKRK SEELDNHSSA MQIVDEVSIL bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 QTQVEAPQIG AWRHRLNFLE GPQRCGLKRK SEELDNH-SA MQIVDELSIL 151 200 ENSP00000304226/1-1215 PAMLQTNMGN PVTVVTATTG SKQNCTTGEG DYQLVQHEVL CSMKNTYEVL ENSTTRP00000015511/1-1211 PAMLQTNMGN PVTVVTATTG TKQNCTT-EG DYQLVQHEVL CSMKNTYEVL ENSBTAP00000039475/1-1216 PAMLQTNMGN PVTVVTTTTG TKQNCTTGEG DYQLVQHEVL CSMKNTYEVL bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 PAMLQTNMGN PVTVVTTTTG TKQNCTTGEG DYQLVQHEVL CSMKNTYEVL 201 250 ENSP00000304226/1-1215 DFLGRGTFGQ VVKCWKRGTN EIVAIKILKN HPSYARQGQI EVSILARLST ENSTTRP00000015511/1-1211 DFLGRGTFGQ VVKCWKRGTN EIVAIKILKN HPSYARQGQI EVSILARLST ENSBTAP00000039475/1-1216 DFLGRGTFGQ VVKCWKRGTN EIVAVKILKN HPSYARQGQI EVSILARLST bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 DFLGRGTFGQ VVKCWKRGTN EIVAIKILKN HPSYARQGQI EVSILARLST 251 300 ENSP00000304226/1-1215 ENADEYNFVR AYECFQHRNH TCLVFEMLEQ NLYDFLKQNK FSPLPLKVIR ENSTTRP00000015511/1-1211 ENADEYNFVR AYECFQHRNH TCLVFEMLEQ NLYDFLKQNK FSPLPLKVIR ENSBTAP00000039475/1-1216 ENADEYNFVR AYECFQHRNH TCLVFEMLEQ NLYDFLKQNK FSPLPLKVIR bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 ENADEYNFVR AYECFQHRNH TCLVFEMLEQ NLYDFLKQNK FSPLPLKVIR 301 350 ENSP00000304226/1-1215 PILQQVATAL KKLKSLGLIH ADLKPENIML VDPVRQPYRV KVIDFGSASH ENSTTRP00000015511/1-1211 PILQQVATAL KKLKSLGLIH ADLKPENIML VDPVRQPYRV KVIDFGSASH ENSBTAP00000039475/1-1216 PILQQVATAL KKLKSLGLIH ADLKPENIML VDPVRQPYRV KVIDFGSASH bmy_16586T0/1-791 ---------- ---------- ---------- ---------- ---------- BACU008886/1-1214 PILQQVATAL KKLKSLGLIH ADLKPENIML VDPVRQPYRV KVIDFGSASH 351 400 ENSP00000304226/1-1215 VSKTVCSTYL QSRYYRAPEI ILGLPFCEAI DMWSLGCVIA ELFLGWPLYP ENSTTRP00000015511/1-1211 VSKTVCSTYL QSRYYRAPEI ILGLPFCEAI DMWSLGCVIA ELFLGWPLYP ENSBTAP00000039475/1-1216 VSKTVCSTYL QSRYYRAPEI ILGLPFCEAI DMWSLGCVIA ELFLGWPLYP bmy_16586T0/1-791 ---------- ---MARAPEI ILGLPFCEAI DMWSLGCVIA ELFLGWPLYP BACU008886/1-1214 VSKTVCSTYL QSRYYRAPEI ILGLPFCEAI DMWSLGCVIA ELFLGWPLYP 401 450 ENSP00000304226/1-1215 GALEYDQIRY ISQTQGLPGE QLLNVGTKST RFFCKETDMS HSGWRLKTLE ENSTTRP00000015511/1-1211 GALEYDQIRY ISQTQGLPGE QLLNVGTKST RFFCRETDIS HSGWRLKTLE ENSBTAP00000039475/1-1216 GALEYDQIRY ISQTQGLPGE QLLNVGTKST RFFCRETDLS HSGWRLKTLE bmy_16586T0/1-791 GALEYDQ--- ---------- ---------- ---------- -------TLE BACU008886/1-1214 GALEYDQIRY ISQTQGLPGE QLLNVGTKST RFFCRETDIS HSGWRLKTLE 451 500 ENSP00000304226/1-1215 EHEAETGMKS KEARKYIFNS LDDVAHVNTV MDLEGSDLLA EKADRREFVS ENSTTRP00000015511/1-1211 EHEAETGMKS KEARKYIFNS LDDIVHVNTV MDLEGSDLLA EKADRREFVS ENSBTAP00000039475/1-1216 EHEAETGMKS KEARKYIFNS LDDIVHVNTV MDLEGSDLLA EKADRREFVG bmy_16586T0/1-791 EHEAETGMKS KEARKYIFNS LDDIVHVNTV MDLEGSDLLA EKADRREFVS BACU008886/1-1214 EHEAETGMKS KEARKYIFNS LDDIVHVNTV MDLEGSDLLA EKADRREFVS 501 550 ENSP00000304226/1-1215 LLKKMLLIDA DLRITPAETL NHPFVNMKHL LDFPHSNHVK SCFHIMDICK ENSTTRP00000015511/1-1211 LLKKMLLIDA DLRITPAETL NHAFVNMKHL LDFPHSNHVK SCFHIMDICK ENSBTAP00000039475/1-1216 LLKKMLLIDA DLRITPAETL NHAFVNMKHL LDFPHSNHVK SCFHIMDICK bmy_16586T0/1-791 LLKKMLLIDA DLRITPAETL NHAFVNMKHL LDFPHSNHVK SCFHIMDICK BACU008886/1-1214 LLKKMLLIDA DLRITPAETL NHAFVNMKHL LDFPHSNHVK SCFHIMDICK 551 600 ENSP00000304226/1-1215 SHLNSCDTNN HNKTSLLRPV ASSSTATLTA NFTKIGTLRS QALTTSAHSV ENSTTRP00000015511/1-1211 SHPNSCDTNN HNKTSLLRPV APSSTANLTA NFTKIGTLRS QALTTSAHSV ENSBTAP00000039475/1-1216 SHPNSCDANN HNKTSLLRPV APSSTTNLAA NFTKIGTLRS QALTTSAHSV bmy_16586T0/1-791 SHPNSCDTNN HNKTSLLRPV APSSTANLTA NFTKIGTLRS QALTTSAHSV BACU008886/1-1214 SHPNSCDTNN HNKTSLLRPV APSSTANLTA NFTKIGTLRS QALTTSAHSV 601 650 ENSP00000304226/1-1215 VHHGIPLQAG TAQFGCGDAF QQTLIICPPA IQGIPATHGK PTSYSIRVDN ENSTTRP00000015511/1-1211 VHHGIPLQAG TAHFGCGDAF QQTLIICPPA IQGIPATHGK PTSYSIRVDN ENSBTAP00000039475/1-1216 VHHGIPLQAG TAHFGCGDAF QQTLIICPPA IQGIPATHGK PTSYSIRVDN bmy_16586T0/1-791 VHHGIPLQAG TAHFGCGDAF QQTLIICPPA IQGIPATHGK PTSYSIRVDN BACU008886/1-1214 VHHGIPLQAG TAHFGCGDAF QQTLIICPPA IQGIPATHGK PTSYSIRVDN 651 700 ENSP00000304226/1-1215 TVPLVTQAPA VQPLQIRPGV LSQTWSGRTQ QMLVPAWQQV TPLAPATTTL ENSTTRP00000015511/1-1211 TVPLVTQAPA MQPLQIRPGV LSQTWSGRTQ QMLVPAWQQI TPMAPATT-L ENSBTAP00000039475/1-1216 TVPLVTQAPA VQPLQIRPGV LSQTWSGRTQ QMLIPAWQQV TPLAPATTAL bmy_16586T0/1-791 TVPLVTQAPA MQPLQIRPGV LSQTWSGRTQ QMLVPAWQHI TPMAPATTTL BACU008886/1-1214 TVPLVTQAPA MQPLQIRPGV LSQTWSGRTQ QMLVPAWQQI TPMAPATTTL 701 750 ENSP00000304226/1-1215 TSESVAGSHR LGDWGKMISC SNHYNSVMPQ PLLTNQITLS APQPVSVGIA ENSTTRP00000015511/1-1211 ASEGMAGSQR LGDWGKMISH SNHYSSVMPQ PLLTNQITLS APQPISVGIA ENSBTAP00000039475/1-1216 ASEGVAGSQR LGDWGKMISH SNHYSSMMPQ PLLTNQITLS APQPISVGIA bmy_16586T0/1-791 ASEGMAGSQR LGDWGKMISH SNHYSSVMPQ PLLTNQITLS APQPISVGIA BACU008886/1-1214 ASEGMAGSQR LGDWGKMISH SNHYSSVMPQ PLLTNQITLS APQPISVGIA 751 800 ENSP00000304226/1-1215 HVVWPQPATT KKNKQCQNRG ILVKLMEWEP GREEINAFSW SNSLQNTNIP ENSTTRP00000015511/1-1211 HVVWPQPATT KKNKLCQNRG ILVKLMEWEP GREEINAFSW SNSLQNTNIP ENSBTAP00000039475/1-1216 HVVWPQPATT KKNKLCQNRG ILVKLMEWEP GREEINAFSW SNSLQNTNIP bmy_16586T0/1-791 HVVWPQPATT KKNKLCQNR- ---------- ---------- SNSLQNTNIP BACU008886/1-1214 HVVWPQPATT KKNKLCQNRG ILVKLMEWEP GREEINAFSW SNSLQNTNIP 801 850 ENSP00000304226/1-1215 HSAFISPKII NGKDVEEVSC IETQDNQNSE GEARNCCETS IRQDSDSSVS ENSTTRP00000015511/1-1211 QSAFISPKIV NGKDVEEASC IETQDNHNSE GEARNCCETS IRQDPDSSVS ENSBTAP00000039475/1-1216 QSAFISPKTV TGKDVQEVSC IETQDNRNSE GEAGNCCDTS IRQDSDSSVS bmy_16586T0/1-791 QSAFISPKIV NGKDVEEASC IGTQDNHNSE GEARNCCETS IRQDSDSSVS BACU008886/1-1214 QSAFISPKIV NGKDVEEASC IETQDNHNSE GEARNCCETS IRQDSDSSVS 851 900 ENSP00000304226/1-1215 DKQRQTIIIA DSPSPAVSVI TISSDTDEEE T-SQRHSLRE CKGSLDCEAC ENSTTRP00000015511/1-1211 DKQRQTIIIA DSPSPAVSVI TISSDTDEEE T-SQRHSLRE CKGNLDCEAC ENSBTAP00000039475/1-1216 DKQRQTIIIA DSPSPAVSVI TISSDTDEEE TSSQRHSLRE CKGNLDCEAC bmy_16586T0/1-791 DKQRQTIIIA DSPSPAVSVI TISSDTDEEE T-SQRHSLRE CKGNLDCEAC BACU008886/1-1214 DKQRQTIIIA DSPSPAVSVI TISSDTDEEE T-SQRHSLRE CKGNLDCEAC 901 950 ENSP00000304226/1-1215 QSTLNIDRMC SLSSPDSTLS TSSSGQSSPS PCKRPNSMSD EEQESSCDTV ENSTTRP00000015511/1-1211 QSTLNIDRIC SLSSPESTLS TSSSGQSSPS PCKRPNXXXX XXXXXXCDTV ENSBTAP00000039475/1-1216 QSTLNIDRMC SLSSPDSTLS TSSSGQSSPS PCKRPNSMSD EEQESGCDTV bmy_16586T0/1-791 QSTLNIDRIC SLSSPDSTLS TSSSGQSSPS PCKRPNSMSD EEQESSCDTV BACU008886/1-1214 QSTLNIDRIC SLSSPDSTLS TSSSGQSSPS PCKRPNSMSD EEQESSCDTV 951 1000 ENSP00000304226/1-1215 DGSPTSDSSG HDSPFAESTF VEDTHENTEL VSSADTETKP AVCSVVVPPV ENSTTRP00000015511/1-1211 DGSPTSDSSG HDSPFAESSF VADTHQNTEL VTSADTETKP AVCTVVVPPM ENSBTAP00000039475/1-1216 DGSPTSDSSG HDSPFAESSF VEDTHQNAEL VTSTDTETKP AVCTVVVPPM bmy_16586T0/1-791 DGSPTSDSSG HDSPFAESSF VADTHQNTEL VTSADTETKP AVCTVVVPPM BACU008886/1-1214 DGSPTSDSSG HDSPFAESSF VADTHQNAEL VTSADTETKP AVCTVVVPPM 1001 1050 ENSP00000304226/1-1215 ELENGLNADE HMANTDSICQ PLIKGRSAPG RLNQPSAVGT RQQKLTSAFQ ENSTTRP00000015511/1-1211 GLENGLNADE HMANTDSVCQ PLIKGRSAPG RLNQPSAVGN RQQKLTSAFQ ENSBTAP00000039475/1-1216 GLENGLNADE HMANTDSICQ PLIKGRSAPG RLNQPSTVGN RQQKSTSAFQ bmy_16586T0/1-791 GLENGLNADE HMANTDSVCQ PLIKGRSAPG RLNQPSAVGN RQQKLTSAFQ BACU008886/1-1214 GLENGLNADE HMANTDSVCQ PLIKGRSAPG RLNQPSAVGN RQQKLTSAFQ 1051 1100 ENSP00000304226/1-1215 QQHLNFSQVQ HFGSGHQEWN GNFGHRRQQA YIPTSVTSNP FTLSHGSPNH ENSTTRP00000015511/1-1211 QQHLNFSQVQ HFGSGHQXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXLNH ENSBTAP00000039475/1-1216 QQHLNFSQVQ HFGSGHQEWN GNFGHRRQQA YIPTSVTSNP FTLSHGSPNH bmy_16586T0/1-791 QQHLNFSQVQ HFGSGHQEWN GNFGHRRQQA YIPTSVTSNP FTLSHGSPNH BACU008886/1-1214 QQHLNFSQVQ HFGSGHQEWN GNFGHRRQQA YIPTSVTSNP FTLSHGSPNH 1101 1150 ENSP00000304226/1-1215 TAVHAHLAGN THLGGQPTLL PYPSSATLSS AAPVAHLLAS PCTSRPMLQH ENSTTRP00000015511/1-1211 TAVHAHLAGN THLGGQ-TLL PYPSSATLSS AAPVAHLLAS PCTSRPMLQH ENSBTAP00000039475/1-1216 TAVHAHLAAS AHLGGQPTLL PYPSSAPLSS AAPVAHLLAS PCTSRPMLQH bmy_16586T0/1-791 TAVHAHLAGN THLGGQPTLL PYPSSATLSS AAPVAHLLAS PCTSRPMLQH BACU008886/1-1214 TAVHAHLAGN THLGGQPTLL PYPSSATLSS AAPVAHLLAS PCTSRPMLQH 1151 1200 ENSP00000304226/1-1215 PTYNISHPSG IVHQVPVGLN PRLLPSPTIH QTQYKPIFPP HSYIAASPAY ENSTTRP00000015511/1-1211 PTYNISHPSG IVHQVPVGIN PRLLPSPTIH QTQYKPIFPP HSYIAASPAY ENSBTAP00000039475/1-1216 PTYNISHPSG IVHQVPVGIN PRLLPSPTIH QTQYKPIFPP HSYIAASPAY bmy_16586T0/1-791 PTYNISHPSG IVHQVPVGIN PRLLPSPTIH QTQYKPIFPP HSYIAASPAY BACU008886/1-1214 PTYNISHPSG IVHQVPVGIN PRLLPSPTIH QTQYKPIFPP HSYIAASPAY 1201 1250 ENSP00000304226/1-1215 TGFPLSPTKL SQYPYM ENSTTRP00000015511/1-1211 TGFPLSPTKL SQYPYM ENSBTAP00000039475/1-1216 TGFPLSPTKL SQYPYM bmy_16586T0/1-791 TGFPLSPTKL SQYPYM BACU008886/1-1214 TGFPLSPTKL SQYPYM