KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:37 2014 Check: 00 .. Name: bmy_09574T0/1-729 Len: 1232 Check: 3295 Weight: 1.00 Name: ENSP00000324127/1-1047 Len: 1232 Check: 204 Weight: 1.00 Name: ENSBTAP00000039513/1-978 Len: 1232 Check: 5904 Weight: 1.00 Name: ENSTTRP00000013225/1-975 Len: 1232 Check: 6643 Weight: 1.00 Name: BACU007774/1-341 Len: 1232 Check: 8970 Weight: 1.00 // 1 50 bmy_09574T0/1-729 MDEIRGTMMI RSAKTGRRST KCGYNKKQMR VDDRSKWRIL LMEKRQPAFK ENSP00000324127/1-1047 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039513/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013225/1-975 ---------- ---------- ---------- ---------- ---------- BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_09574T0/1-729 NSDFKDRSKF SSCSLEFLLH AGRDLGLRSL GCSLARLSYL PLKGTIRHLS ENSP00000324127/1-1047 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039513/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013225/1-975 ---------- ---------- ---------- ---------- ---------- BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 101 150 bmy_09574T0/1-729 VNGIEFLPDT SGAGTESTKD ITAFMKNLQG KERNRLLVAG LAMIHKGLKM ENSP00000324127/1-1047 ---------- ---------- ---------- ---------- ---------M ENSBTAP00000039513/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013225/1-975 ---------- ---------- ---------- ---------- ---------M BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_09574T0/1-729 CSTPFSFKEF ATQSRKKSIS FTGPQAECQV VVSRHHRRLP TVNAGFESCF ENSP00000324127/1-1047 EGRSAAAETF VWVNNASAHS QSVAKAKYEF LFGRSEGKAP DTS------- ENSBTAP00000039513/1-978 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013225/1-975 EGSDAAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXX------- BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 201 250 bmy_09574T0/1-729 LLSFQASHIL LLLSCEGDHG GSTLLPPNVT NEFPEYGTME ESGEGLRASL ENSP00000324127/1-1047 ---------- -------DHG GSTLLPPNVT NEFPEYGTME EGGEGLRASL ENSBTAP00000039513/1-978 ---------- -------DHG GSTLLPPNVT NEFPEYGTME ASGEGLRASL ENSTTRP00000013225/1-975 ---------- -------DHG GSTLLPPNVT NEFPEYGTME ESGEGLRASL BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 251 300 bmy_09574T0/1-729 EFDAESLPCC XQAQQRVQPL AGHPSGLLSV TGGPKDVREV PSQSHLKEQS ENSP00000324127/1-1047 EFDGEALPCH PQEQQGVQPL TGCHSGLDSV TEGPKDVREA PSQSHLKEQS ENSBTAP00000039513/1-978 EFDAESLLRC PGGPQGAQPL AGRHSGPVTV TGGPKDVRGL PSQSHFKEPS ENSTTRP00000013225/1-975 EFDAESLPCC PQVQQRVQSL AGHPSGLLSV TGGPKDVREV PSQSHLKEQS BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 301 350 bmy_09574T0/1-729 LQPIDSLISA LKATEARIVS GTLQATXVLD GDVVSTFLVQ QVEQEPDTAS ENSP00000324127/1-1047 LQPIDSLISA LKATEARIIS GTLQATKVLD QDAVSSFSVQ QVEKELDTAS ENSBTAP00000039513/1-978 LQPIDSLISA LKATEARIAS GTSQATKVLD GAAVSTFPAQ QGGQEPDTAS ENSTTRP00000013225/1-975 LQPIDSLISA LKATEARIVS GTLQATKVLD GDAVSTFLVQ QVEQEPDPAS BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 351 400 bmy_09574T0/1-729 HKTQRANTLF PAGREKSPDI PLSAEVTTEE NFYLSIQEDL TALLTGETQA ENSP00000324127/1-1047 RKTQRVNKTL PAGQKNLPEI PLSAEVTTEE SFYLSIQKDL TALLTGDTQA ENSBTAP00000039513/1-978 HKARKAHALF PAGCEKSPDI PLSAKVPTEE HFYLSIQEDL TALLTGEIQA ENSTTRP00000013225/1-975 HKTQRANTLF PAGREKSPDI PLSAEVTTEE GFYLSIQEDL TALLTGETQA BACU007774/1-341 ---------- ---------- ---------- MFTLN----- TVLLN----- 401 450 bmy_09574T0/1-729 EISLRANNGR KGAVHVQEPA CPASSVGSP- VTHSSVGSAG LLRERRSDQG ENSP00000324127/1-1047 EISQIMNNGR KGAVCVQEPS CPLASLGSSA VTCHSAGSVG FLKEQRSALG ENSBTAP00000039513/1-978 EPSLRASNGR KGAVHVQEPA GPASLVGSP- ATPSSAGGAG LLRERRSDQ- ENSTTRP00000013225/1-975 ELSLRANNGR KGAVHVQEPA CPASSVGSP- VTHSSVGSAG LLRERRSDQG BACU007774/1-341 ---------- ---LCVQ--- ---------- ---------- ---------- 451 500 bmy_09574T0/1-729 REHPEQCGRG SSSGRPGQVK HVEFHGVEIL WTGGEKRETW QPVDFQTSLE ENSP00000324127/1-1047 REHPGGCDRS SSMGRPGRVK HVEFQGVEIL WTGGDKRETQ HPIDFETSLQ ENSBTAP00000039513/1-978 REHPGQC--- -APGRPGQGK HVAFQGVDTL WTGGEERESR RPADAQTPPG ENSTTRP00000013225/1-975 REHPEQCGRG SSSGRPGQVK HVEFQGVEIL WTGGEKRGTW QPVDFQTSLE BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 501 550 bmy_09574T0/1-729 RTTLPESKEF SKVPSHLVSS AGLCDSAGLT DSVWDDTRRA PSERLATGSG ENSP00000324127/1-1047 RTASPDSKES SKVPRHLISS AGLCNSSSLT ENVWDESWKA PSERPGTSSG ENSBTAP00000039513/1-978 RTAPPESREF SKVHSHLISS AALRDP---- ---------A PPER------ ENSTTRP00000013225/1-975 RTTPPESKEF SKVPSHLISS AGLCDSAGLT ESVWDDTWRA PSERLATGSG BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_09574T0/1-729 PFLPEPLLES GEDEVFLREN KEHLETKPEL ERDRERILEQ EEHFRARDDD ENSP00000324127/1-1047 TFSPVRLDES GEDEVFLQEN KQHLEKTPKP ERDRERISEQ EEHVKGEDED ENSBTAP00000039513/1-978 PCPPEPLLET VEDEVFLRED KEHLERRAEP ERAGERILEQ AEHLRGGDDD ENSTTRP00000013225/1-975 PFLPEPLHES GEDEVFLREN KEHLETKPEL ERDRERILEQ EEHFRARDDD BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 601 650 bmy_09574T0/1-729 ILGSGCAEDS TDVYSSQFET ILDNTSLYYS AESLETLYSE PDSYFSFEVP ENSP00000324127/1-1047 ILGPGYTEDS TDVYSSQFET ILDNTSLYYS AESLETLYSE PDSYFSFEMP ENSBTAP00000039513/1-978 ILGSGYAEDS TDVYSSQFET ILDNTSLYYS AESLETLYSE PDSYFSFEMP ENSTTRP00000013225/1-975 ILGSGCAEDS TDVYSSQFET ILDNTSLYYS AESLETLYSE PDSYFSFEVP BACU007774/1-341 ---------- ---------- -----SLFYP ---------- ---------- 651 700 bmy_09574T0/1-729 LTPMIQQRIK EGGQFLERTS MGGQQDVLSI SADGGIVMGY SGGIANGLSG ENSP00000324127/1-1047 LTPMIQQRIK EGGQFLERTS GGGHQDILSV SADGGIVMGY SSGVTNGLND ENSBTAP00000039513/1-978 LTPMIQQRIK EGGQFLERTS VGAQQDVLSI SADGGIVMGS SSGIANGLSG ENSTTRP00000013225/1-975 LTPMIQQRIK EGGQFLERTS VEGQQDVLSI SADGGIVMGY SGGITNGLSG BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_09574T0/1-729 SSNSTYAKGT PEIAFWG--- ---------- ---------- ---------- ENSP00000324127/1-1047 ASDSIYTKGT PEIAFWGSNA GVKTTRLEAH SEMGSTEILE KETPENLSNG ENSBTAP00000039513/1-978 SSNSIYSKGT PEIAFWGSNA GVKTSLLEAH SEMGSTEILE KEASGSLSNS ENSTTRP00000013225/1-975 SSNSTYTKGT PEIAFWGSNA GMKTTLLEAH SEMGSTEILE KETSGSLSNG BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 TSSNVEAAKR LAKRLYQLDR FKRSDVAKHL GKNNEFSKLV AEEYLKFFDF ENSBTAP00000039513/1-978 TSSNTEAAKR LAKRLYQLDR FKRSDVAKHL GKNNEFSKLV AEEYLKFFDF ENSTTRP00000013225/1-975 TSSNVEAAKR LAKRLYQLDR FKRSDVAKHL GKNNEFSKLV AEEYLKFFDF BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 TGMTLDQSLR YFFKAFSLVG ETQERERVLI HFSNRYFYCN PDTIASQDGV ENSBTAP00000039513/1-978 TGMTLDQSLR YFFKAFSLVG ETQERERILV HFSNRYFYCN PDTIASQDGV ENSTTRP00000013225/1-975 TGMTLDQSLR YFFKAFSLVG ETQERERILV HFSNRYFYCN PDTIASQDGV BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 851 900 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 HCLTCAIMLL NTDLHGHNIG KKMTCQEFIA NLQGVNEGVD FSKDLLKALY ENSBTAP00000039513/1-978 HCLTCAMMLL NTDLHGHNIG KKMTCQEFIA NLQGVDEGGD FSKDLLKALY ENSTTRP00000013225/1-975 HCLTCAMMLL NTDLHGHXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU007774/1-341 ---------- ---------- ---------- ---------- ---------- 901 950 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 NSIKNEKLEW AVDDEEKKKS PSESTEEKAN GTHPKTISRI GSTTNPFLDI ENSBTAP00000039513/1-978 NSIKNEKLEW AVDDEEKKKS LSEGADEKAN GTHPKSISRI GSTTNPFLDI ENSTTRP00000013225/1-975 XXXXXXXXXX XXDDEEKKKS PSEGTDEKAN GTHPKTISRI GSTTNPFLDI BACU007774/1-341 ---------- FRDDEEKKKS SSEGTDEKAN GTHPKTISRI GSTTNPFLDI 951 1000 bmy_09574T0/1-729 ---------- SVFLSRKSHM KQD------- ---------- ---------- ENSP00000324127/1-1047 PHDPNAAVYK SGFLARKIHA DMDGKK---- -------TPR GKRGWKTFYA ENSBTAP00000039513/1-978 PHDPNAAVYK SGFLARKIHA DMDGKK---- -------TPR GKRGWKTFYA ENSTTRP00000013225/1-975 PHDPNAAVYK SGFLARKIHA DMDGKK---- -------TPR GKRGWKTFYA BACU007774/1-341 PHDPNAAVYK SGFLARKIHA DMDGKKKPKI GGKTDGSAPR GKRGWKTFYA 1001 1050 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 VLKGTVLYLQ KDEYKPEKAL SEEDLKNAVS VHHALASKAT DYEKKPNVFK ENSBTAP00000039513/1-978 VLKGTVLYLQ KDEYKPEKAL SEEDLKNAVS VHHALASQAT DYEKKPNVLK ENSTTRP00000013225/1-975 VLKGTVLYLQ KDEYKPEKAL SEEDLKNAVS VHHALASRAT DYEKKPNVLK BACU007774/1-341 VLKGTVLYLQ KDEYKPEKAL SEEDLKNAVS VHHALASRAT DYEKKPNVLK 1051 1100 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 LKTADWRVLL FQTQSPEEMQ GWINKINCVA AVFSAPPFPA AIGSQKKFSR ENSBTAP00000039513/1-978 LKTADWRVLL FQAQSPEEMQ GWINKINCVA AVFSAPPFPA AIGSQKKFSR ENSTTRP00000013225/1-975 LKTADWRVLL FQAQSPEEMQ GWINKINCVA AVFSAPPFPA AIGSQKKFSR BACU007774/1-341 LKTADWRVLL FQAQSPEEMQ GWINKINCVA AVFSAPPFPA AIGSQKKFSR 1101 1150 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 PLLPATTTKL SQEEQLKSHE SKLKQITTEL AEHRSYPPDK KVKAKDVDEY ENSBTAP00000039513/1-978 PLLPATTTKL SQEEQLKSHE SKLRQITTEL AEHRSYPPDK KVKAKEVDEY ENSTTRP00000013225/1-975 PLLPATTTKL SQEEQLKSHE SKLRQITTEL AEHRSYPPDK KVKAKEVDEY BACU007774/1-341 PLLPATTTKL SQEEQLKSHE SKLRQITTEL AEHRSYPPDK KVKAKEVDEY 1151 1200 bmy_09574T0/1-729 ---------- ---------- ---------- ---------- ---------- ENSP00000324127/1-1047 KLKDHYLEFE KTRYEMYVSI LKEGGKELLS -NDESEAAGL KKSHSSPSLN ENSBTAP00000039513/1-978 KLKDHYLEFE KTRYEMYVRL LKEGGLELLS -GGRGGPAGL KKSHSSPSLN ENSTTRP00000013225/1-975 KLKDHYLEFE ---------- ---------- ---------- ---------- BACU007774/1-341 KLKDHYLEFE KTRYEMYVRL LKEGGLELLS SSGGGGAAGL KKSHSSPSLN 1201 1250 bmy_09574T0/1-729 ---------- ---------- ---------- -- ENSP00000324127/1-1047 PDTSPITAKV KRNVSERKDH RPETPSIKQK VT ENSBTAP00000039513/1-978 PDTSPVTAKV KRNVSERKDH RPETPSIKQK VT ENSTTRP00000013225/1-975 ---------- ---------- ---------- -- BACU007774/1-341 PDASPVTAKV KRNVSERKDH RPETPSIKQK VT