KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:38 2014 Check: 00 .. Name: ENSTTRP00000005202/1-433 Len: 466 Check: 8345 Weight: 1.00 Name: bmy_01332T0/1-350 Len: 466 Check: 4214 Weight: 1.00 Name: BACU004981/1-355 Len: 466 Check: 826 Weight: 1.00 Name: ENSP00000329867/1-386 Len: 466 Check: 7181 Weight: 1.00 Name: ENSBTAP00000039548/1-380 Len: 466 Check: 8604 Weight: 1.00 // 1 50 ENSTTRP00000005202/1-433 MSALE--KSM HLGRLPPRPP LPGSGSS--- --------QS GAKMRMGPGR bmy_01332T0/1-350 MKKCE----- ---------- ---------- ---------- --------GL BACU004981/1-355 MKTLHIFTRK YLAIFISDLR LRFVDEDFTF SCITVFYLKS LSFFPLSPGR ENSP00000329867/1-386 MSALE--KSM HLGRLPSRPP LPGSGGS--- --------QS GAKMRMGPGR ENSBTAP00000039548/1-380 MSALE--KSM HLGRLPSRPP LPGSGGS--- --------QS GAKMRMGPGR 51 100 ENSTTRP00000005202/1-433 KRDFSPVPWS QYFESMEDVE VENETGKDTF RVYKSGSEGP VLLLLHGGGH bmy_01332T0/1-350 K------PWK KAGLFSCSVE ---------- ---------- ---------- BACU004981/1-355 KRDFSPVPWS QYFESMEDVE ---------- ---------- ---------- ENSP00000329867/1-386 KRDFSPVPWS QYFESMEDVE VENETGKDTF RVYKSGSEGP VLLLLHGGGH ENSBTAP00000039548/1-380 KRDFSPVPWS QYFESMEDVE VENETGKDTF RVYKSGSEGP VLLLLHGGGH 101 150 ENSTTRP00000005202/1-433 SALSWAVFTA AIISRVQCRI VALDLRGHGE TKVKNSEDLS AETMAKDVGN bmy_01332T0/1-350 --------SA AIISRVQCRI VALDLRGHGE TKVKNSEDLS AETMAKDVGN BACU004981/1-355 ---------A AIISRVQCRI VALDLRGHGE TKVKNSEDLS AETMAKDVGN ENSP00000329867/1-386 SALSWAVFTA AIISRVQCRI VALDLRSHGE TKVKNPEDLS AETMAKDVGN ENSBTAP00000039548/1-380 SALSWAVFTA AIISRVQCRI VALDLRGHGE TKVRNSEDLS AETMAKDVGN 151 200 ENSTTRP00000005202/1-433 VVEAMYGDLP PPIMLIGHSM GGAIAVHTAS SNLVPSLLGL CMIDVVEXXX bmy_01332T0/1-350 VVEAMYGDLP PPIMLIGHSM GGAIAVHTAS SNLVPSLLGL CMIDVVEGTA BACU004981/1-355 VVEAMYGDLP PPIMLIGHSM GGAIAVHTAS SNLVPSLLGL CMIDVVEGTA ENSP00000329867/1-386 VVEAMYGDLP PPIMLIGHSM GGAIAVHTAS SNLVPSLLGL CMIDVVEGTA ENSBTAP00000039548/1-380 VVEAMYGDLP PPIMLIGHSM GGAIAVHTAS SNLVPSLLGL CMIDVVEGTA 201 250 ENSTTRP00000005202/1-433 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVK SGQIRNLESA RVSMVGQVKQ bmy_01332T0/1-350 MDALNSMQNF LRGRPKTFKS LENAVEWSVK SGQIRNLESA RVSMVGQVKQ BACU004981/1-355 MDALNSMQNF LRGRPKTFKS LENAVEWSVK SGQIRNLESA RVSMVGQVKQ ENSP00000329867/1-386 MDALNSMQNF LRGRPKTFKS LENAIEWSVK SGQIRNLESA RVSMVGQVKQ ENSBTAP00000039548/1-380 MDALNSMQNF LRGRPKTFKS LENAIEWSVK SGQIRNLESA RVSMVGQVKQ 251 300 ENSTTRP00000005202/1-433 CEGITSPEGS KSIVEGIIEE EEEDEERSES VNKRKKEDDM ETKKDHPYTW bmy_01332T0/1-350 CEGIASPEGS KSIVEGIIEE EEEDEEGSES VNKRKKEDDM ETI------- BACU004981/1-355 CEGITSPEGS KSIVEGIIEE EEEDEEGSES VNKRKKEDDM ETKKDHPYTW ENSP00000329867/1-386 CEGITSPEGS KSIVEGIIEE EEEDEEGSES ISKRKKEDDM ETKKDHPYTW ENSBTAP00000039548/1-380 CEGITSPEGS KSIVEGIIEE EEEDEEGSES VNKRKKEDDM ETKKDHPYTW 301 350 ENSTTRP00000005202/1-433 RIELAKTEKY WDGWFRGLSN LFLSCPIPKL LLLAGVDRLD KDLTIGQMQG bmy_01332T0/1-350 ---LTLGELN WQK------- -------QKN TGMAGVDRLD KDLTIGQMQG BACU004981/1-355 RIELAKTEKY WDGWFRGLSN LFLSCPIPKL LLLAGVDRLD KDLTIGQMQG ENSP00000329867/1-386 RIELAKTEKY WDGWFRGLSN LFLSCPIPKL LLLAGVDRLD KDLTIGQMQG ENSBTAP00000039548/1-380 RIELAKTEKY WDGWFRGLSN LFLSCPIPKL LLLAGVDRLD KDLTIGQMQG 351 400 ENSTTRP00000005202/1-433 KFQMQVLPQC GHAVHEDAPD KVSLVLDECK RTVITVGLTE DKPLSSLCRL bmy_01332T0/1-350 KFQMQVLPQC GHAVHEDAPD KVA---EAVA TFLIRHRFAE --PIVCFLAV BACU004981/1-355 KFQMQVLPQC GHAVHEDAPD KVA---EAVA TFLIRHRFAE --PIGGFQW- ENSP00000329867/1-386 KFQMQVLPQC GHAVHEDAPD KVA---EAVA TFLIRHRFAE --PIGGFQ-- ENSBTAP00000039548/1-380 KFQMQVLPQC GHAVHEDAPD KVA---EAVA TFLIRHRFAE --PIGGFQ-- 401 450 ENSTTRP00000005202/1-433 QQLLWGLHRW DSTSSPTSPW QLLLVLALCV WAEELLAPCY FPGLYG---- bmy_01332T0/1-350 SDLLSFPPST LSSVKQYSPA SSIFALFQLP HHSTSASPCC PGTPFPRAGR BACU004981/1-355 ---------- ---------- ---------- ---------- ---------- ENSP00000329867/1-386 ---------- ---------- ---------- --------CV FPGC------ ENSBTAP00000039548/1-380 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000005202/1-433 ---------- ------ bmy_01332T0/1-350 GSLLQPIFSV TVLGDA BACU004981/1-355 ---------- ------ ENSP00000329867/1-386 ---------- ------ ENSBTAP00000039548/1-380 ---------- ------