KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:40 2014 Check: 00 .. Name: bmy_01284T0/1-262 Len: 544 Check: 9427 Weight: 1.00 Name: ENSTTRP00000000907/1-498 Len: 544 Check: 5459 Weight: 1.00 Name: BACU014425/1-523 Len: 544 Check: 6404 Weight: 1.00 Name: ENSP00000339740/1-499 Len: 544 Check: 4587 Weight: 1.00 Name: ENSBTAP00000039621/1-488 Len: 544 Check: 4452 Weight: 1.00 // 1 50 bmy_01284T0/1-262 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000907/1-498 MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL BACU014425/1-523 MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL ENSP00000339740/1-499 MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL ENSBTAP00000039621/1-488 MASTTTCTRF TDEYQLFEEL GKGAFSVVRR CMKIPTGQEY AAKIINTKKL 51 100 bmy_01284T0/1-262 ---------- ---------- ----RLHDSI SEE------- ----GFHYLV ENSTTRP00000000907/1-498 SARDHQKL-R EARICRLLKH PNIVRLHDSI SEE------- ----GFHYLV BACU014425/1-523 SARDHQKLER EARICRLLKH PNIVQLHDSI SEXXXXXXXX XXXXGFHYLV ENSP00000339740/1-499 SARDHQKLER EARICRLLKH PNIVRLHDSI SEE------- ----GFHYLV ENSBTAP00000039621/1-488 SARDHQKLER EARICRLLKH PNIVRLHDSI SEE------- ----GFHYLV 101 150 bmy_01284T0/1-262 FDLVTGGELF EDIVAREYYS EADASHCIQQ ILEAVLHCHQ MGVVHRDL-- ENSTTRP00000000907/1-498 FDLVTGGELF EDIVAREYYS EADASHCIQQ ILESVNHCHL NGIVHRDLKP BACU014425/1-523 FDLVTGGELF EDIVAREYYS EADASHCIQQ ILESVNHCHL NGIVHRDLKP ENSP00000339740/1-499 FDLVTGGELF EDIVAREYYS EADASHCIQQ ILESVNHCHL NGIVHRDLKP ENSBTAP00000039621/1-488 FDLVTGGELF EDIVAREYYS EADASHCIQQ ILESVNHCHL NGIVHRDLKP 151 200 bmy_01284T0/1-262 -------KNR ENTISVNQL- ----TEG--- ---SFAGTPG YLSPEVLRKD ENSTTRP00000000907/1-498 ENLLLASKSK GAAVKLADFG LAIEVQGDQQ AWFGFAGTPG YLSPEVLRKD BACU014425/1-523 ENLLLASKSK GAAVKLADFG LAIEVQGDQQ AWFGFAGTPG YLSPEVLRKD ENSP00000339740/1-499 ENLLLASKSK GAAVKLADFG LAIEVQGDQQ AWFGFAGTPG YLSPEVLRKD ENSBTAP00000039621/1-488 ENLLLASKSK GAAVKLADFG LAIEVQGDQQ AWFGFAGTPG YLSPEVLRKD 201 250 bmy_01284T0/1-262 PYGKPVDMWA CGVILYILLV GYPPFWDEDQ HRLYQQIKAG AYDFPSPEWD ENSTTRP00000000907/1-498 PYGKPVDMWA CGVILYILLV GYPPFWDEDQ HRLYQQIKAG AYDFPSPEWD BACU014425/1-523 PYGKPVDMWA CGVILYILLV GYPPFWDEDQ HRLYQQIKAG AYDFPSPEWD ENSP00000339740/1-499 PYGKPVDMWA CGVILYILLV GYPPFWDEDQ HRLYQQIKAG AYDFPSPEWD ENSBTAP00000039621/1-488 PYGKPVDMWA CGVILYILLV GYPPFWDEDQ HRLYQQIKAG AYDFPSPEWD 251 300 bmy_01284T0/1-262 TVTPEAKDLI NKMLTINPAK RITASEALKH PWICQRSTVA SMMHRQETVD ENSTTRP00000000907/1-498 TVTPEAKDLI NKMLTINPAK RITASEALKH PWICQRSTVA SMMHRQETVD BACU014425/1-523 TVTPEAKDLI NKMLTINPAK RITASEALKH PWICQRSTVA SMMHRQETVD ENSP00000339740/1-499 TVTPEAKDLI NKMLTINPAK RITASEALKH PWICQRSTVA SMMHRQETVD ENSBTAP00000039621/1-488 TVTPEAKDLI NKMLTINPAK RITASEALKH PWICQRSTVA SMMHRQETVD 301 350 bmy_01284T0/1-262 CLKKFNARRK LKLINIVDI- ----YMAAKS LLKKPDGVKK RKSSSSVQM- ENSTTRP00000000907/1-498 CLKKFNARRK LKXXXXXXXX XXXXXXXAKS LLKKPDGVK- ---------- BACU014425/1-523 CLKKFNARRK LKGAILTTML ATRNFSAAKS LLKKPDGVKI NNKANVVTSP ENSP00000339740/1-499 CLKKFNARRK LKGAILTTML ATRNFSAAKS LLKKPDGVK- ---------- ENSBTAP00000039621/1-488 CLKKFNARRK LKGAILTTML ATRNFS-AKS LLKKPDGVKK RKSSSSVQM- 351 400 bmy_01284T0/1-262 ---------- ---------- --MESTESSN TTIEDEDVKG IKKKK----- ENSTTRP00000000907/1-498 ---------- ---------- ---ESTESSN TTIEDEDVKA RKQEIIKVTE BACU014425/1-523 KENIPTPALE PQTTVIHNPD GNKESTESSN TTIEDEDVKA RKQEIIKVTE ENSP00000339740/1-499 ---------- ---------- ---ESTESSN TTIEDEDVKA RKQEIIKVTE ENSBTAP00000039621/1-488 ---------- ---------- --MESTESSN TTIEDEDVKA RKQEIIKVTE 401 450 bmy_01284T0/1-262 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000907/1-498 QLIEAINNGD FEAYTKICDP GLTAFEPEAL GNLVEGMDFH RFYFENALSK BACU014425/1-523 QLIEAINSGD FEAYTKICDP GLTAFEPEAL GNLVEGMDFH RFYFENALSK ENSP00000339740/1-499 QLIEAINNGD FEAYTKICDP GLTAFEPEAL GNLVEGMDFH RFYFENALSK ENSBTAP00000039621/1-488 QLIEAINNGD FEAYTKICDP GLTAFEPEAL GNLVEGMDFH RFYFENALSK 451 500 bmy_01284T0/1-262 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000907/1-498 SNKPIHTIIL NPHVHLVGDD AACIAYIRLT QYMDGSGMPK TMQSEETRVW BACU014425/1-523 NNKPIHTIIL NPHVHLVGDD AACIAYIRLT QYMDGSGMPK TTQSEETRVW ENSP00000339740/1-499 SNKPIHTIIL NPHVHLVGDD AACIAYIRLT QYMDGSGMPK TMQSEETRVW ENSBTAP00000039621/1-488 SNKPIHTIIL NPHVHLVGDD AACIAYIRLT QYMDGSGMPK TMQSEETRVW 501 550 bmy_01284T0/1-262 ---------- ---------- ---------- ---------- ---- ENSTTRP00000000907/1-498 HRRDGKWQNV HFHRSGSRTV PIKPSCIPNG KENFSGSTSL WQNI BACU014425/1-523 HRRDGKWQNV HFHRSGSRTV PIN------- ---------- ---- ENSP00000339740/1-499 HRRDGKWQNV HFHRSGSPTV PIKPPCIPNG KENFSGGTSL WQNI ENSBTAP00000039621/1-488 HRRDGKWQNV HFHRSGSPTV PIN------- ---------- ----