KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:41 2014 Check: 00 .. Name: ENSBTAP00000039639/1-1415 Len: 1429 Check: 3409 Weight: 1.00 Name: ENSP00000262919/1-1429 Len: 1429 Check: 9847 Weight: 1.00 Name: ENSTTRP00000008948/1-1418 Len: 1429 Check: 3171 Weight: 1.00 Name: bmy_07676T0/1-895 Len: 1429 Check: 7839 Weight: 1.00 Name: BACU016890/1-1134 Len: 1429 Check: 5070 Weight: 1.00 // 1 50 ENSBTAP00000039639/1-1415 --MVAAATEA RL-RRTVVTP APTSRNGRRC RDWDATRAGR PGLRTGLRLP ENSP00000262919/1-1429 MVAAAAATEA RLRRRTAATA ALAGRSGGPH WDWDVTRAGR PGLGAGLRLP ENSTTRP00000008948/1-1418 MVAAAAATEA RLRRRTVATP APGSRNSRRC RDWDATRAGR PGLGTRLRLP bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000039639/1-1415 R------RWR RLLLLLLPP- ---LLLLPWA AEAAAAAASV SGSAAAEAKE ENSP00000262919/1-1429 RLLSPPLRPR LLLLLLLLSP PLLLLLLPCE AEAAAAAAAV SGSAAAEAKE ENSTTRP00000008948/1-1418 R------RRR RLLLLLLLPP ---LLLLPWA AEAAAAAMAV SGSASAEAKE bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000039639/1-1415 CDRPCVNGGR CNPGTGQCVC PAGWVGEQCQ HCGGRFRLTG SSGFITDGPG ENSP00000262919/1-1429 CDRPCVNGGR CNPGTGQCVC PAGWVGEQCQ HCGGRFRLTG SSGFVTDGPG ENSTTRP00000008948/1-1418 CDRPCVNGGR CNPGTGQCVC PAGWVGEQCQ HCGGRFRLTG SSGFITDGPG bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000039639/1-1415 NYKYKTKCTW LIEGQPNRIM RLRFNHFATE CSWDHLYVYD GDSIYAPLVA ENSP00000262919/1-1429 NYKYKTKCTW LIEGQPNRIM RLRFNHFATE CSWDHLYVYD GDSIYAPLVA ENSTTRP00000008948/1-1418 NYKYKTKCTW LIEGQPNRIM RLRFNHFATE CSWDHLYVYD GDSIYAPLVA bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------M RLRFNHFATE CSWDHLYVYD GDSIYAPLVA 201 250 ENSBTAP00000039639/1-1415 AFSGLIVPER DGNETVPEVV ATSGYALLHF FSDAAYNLTG FNITYNFDMC ENSP00000262919/1-1429 AFSGLIVPER DGNETVPEVV ATSGYALLHF FSDAAYNLTG FNITYSFDMC ENSTTRP00000008948/1-1418 AFSGLIVPER DGNETVPEVV ATSGYALLHF FSDAAYNLTG FNITYNFDMC bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 AFSGLIVPER DGNETVPEVV ATSGYALLHF FSDAAYNLTG FNITYNFDMC 251 300 ENSBTAP00000039639/1-1415 PNNCSGRGEC KISNSSNTVQ CECSENWKGE ACDIPHCVNN CGFPHRGICN ENSP00000262919/1-1429 PNNCSGRGEC KISNSSDTVE CECSENWKGE ACDIPHCTDN CGFPHRGICN ENSTTRP00000008948/1-1418 PNNCSGRGEC KISNSSNTVQ CECSENWKGE ACDIPHCVNN CGFPHRGICN bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 PNNCSDRGEC KISNNSNTVQ CECSENWKGE ACDIPHCVNN CGFPHRGICN 301 350 ENSBTAP00000039639/1-1415 SSDVRGCSCF SEWQGPGCSV PVPANQSFWT REEYSDLKLP RASHKAVVNG ENSP00000262919/1-1429 SSDVRGCSCF SDWQGPGCSV PVPANQSFWT REEYSNLKLP RASHKAVVNG ENSTTRP00000008948/1-1418 SSDVRGCSCF SEWQGPGCSV PVPANQSFWT QEEYSNLKLP RASHKAVVNG bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 SSDVRGCSCF SEWQGPGCLV PVPANQSFWT REEYSNLKLP RASHKAVVNG 351 400 ENSBTAP00000039639/1-1415 NIMWVVGGYM FNHSDYNMVL AYDLASREWL ALNRSVNSVV VRYGHSLALY ENSP00000262919/1-1429 NIMWVVGGYM FNHSDYNMVL AYDLASREWL PLNRSVNNVV VRYGHSLALY ENSTTRP00000008948/1-1418 NIMWVVGGYM FNHSDYNMVL AYDLASREWL ALNRSVNNVV VRYGHSLALY bmy_07676T0/1-895 ---------- ---------- -YDLASREWL ALNHSVNNVV VRYGHSLALY BACU016890/1-1134 NIMWVVGGYM FNHSDYNMVL AYDLASREWL ALNRSVNNVV ARYGHSLALY 401 450 ENSBTAP00000039639/1-1415 QDKIYMYGGK IDSTGNVTNE LRVFHIHNES WVLLSPKAKE QYAVVGHSAH ENSP00000262919/1-1429 KDKIYMYGGK IDSTGNVTNE LRVFHIHNES WVLLTPKAKE QYAVVGHSAH ENSTTRP00000008948/1-1418 KDKIYMYGGK IDSTGNVTNE LRVFHIHNES WVLLSPKAKE QYAVVGHSAH bmy_07676T0/1-895 KDKIYMYGGK IDSTGNVTNE LRVFHIHNES WVLLSPKAKE QYAVVGHSAH BACU016890/1-1134 KDKIYMYGGK IDSTGNVTNE LRVFHIHNES WVLLSPKAKE QYAVVGHSAH 451 500 ENSBTAP00000039639/1-1415 IVTLKNGRVV MLVIFGHCPL YGYISSVQEY DLDKNTWSIL HTQGALVQGG ENSP00000262919/1-1429 IVTLKNGRVV MLVIFGHCPL YGYISNVQEY DLDKNTWSIL HTQGALVQGG ENSTTRP00000008948/1-1418 IVTLKTGQVV MLIIFGHCPL YGYISNVQEY DLGKNTWSIL HTQGALVQGG bmy_07676T0/1-895 IVTLKTGRVV MLIIFGHCPL YGYISNVQEY DLGENTWSIL HTQGALVQGG BACU016890/1-1134 IVTLKTGRVV MLIIFGHCPL YGYISNVQEY DLGENTWSIL HTQGALVQGG 501 550 ENSBTAP00000039639/1-1415 YGHSSVYDDR TKALYIHGGY KAFSANKYRL ADDLYRYDVD TQMWTILKDS ENSP00000262919/1-1429 YGHSSVYDHR TRALYVHGGY KAFSANKYRL ADDLYRYDVD TQMWTILKDS ENSTTRP00000008948/1-1418 YGHSSVYDHR TRSLYIHGGY KAFSANKYRL ADDLYRYNVD TQMWTILKDS bmy_07676T0/1-895 YGHSSVYDHR TRSLYIHGGY KAFSANKYRL ADDLYRYNVD TQMWTILKDS BACU016890/1-1134 YGHSSVYDHR TRSLYIHGGY KAFSANKYRL ADDLYRYNVD TQMWTILKDS 551 600 ENSBTAP00000039639/1-1415 RFFRYLHTAV IVSGTMLVFG GNTHNDTSMS HGAKCFSSDF MAYDIDCDRW ENSP00000262919/1-1429 RFFRYLHTAV IVSGTMLVFG GNTHNDTSMS HGAKCFSSDF MAYDIACDRW ENSTTRP00000008948/1-1418 RFFRYLHTAV IVSGTMLVFG GNTHNDTSMS HGAKCFSSDF MAYDIACDRW bmy_07676T0/1-895 RFFRYLHTAV IVSGTMLVFG GNTHNDTSMS HGAKCFSSDF MAYDIACDRW BACU016890/1-1134 RFFRYLHTAV IVSGTMLVFG GNTHNDTSMS HGAKCFSSDF MAYDIACDRW 601 650 ENSBTAP00000039639/1-1415 SVLPRPDLHH DVNRFGHSAV LYNRTMYVFG GFNSLLLSDI LVFTSEQCEA ENSP00000262919/1-1429 SVLPRPDLHH DVNRFGHSAV LHNSTMYVFG GFNSLLLSDI LVFTSEQCDA ENSTTRP00000008948/1-1418 SVLPRPDLHH DVNRFGHSAV LYNSTMYVFG GFNSLLLSDI LVFTSEQCEA bmy_07676T0/1-895 SVLPRPDLHH DVNRFGHSAV LYNSTMYVFG GFNSLLLSDI LVFTSEQCEA BACU016890/1-1134 SVLPRPDLHH DVNRFGHSAV LYNSTMYVFG GFNSLLLSDI LVFTSEQCEA 651 700 ENSBTAP00000039639/1-1415 HQSEAACLAA GPGVRCMWDT GSSQCVSWEL APEAQ-EKIK SECFSKRIFD ENSP00000262919/1-1429 HRSEAACLAA GPGIRCVWNT GSSQCISWAL ATDEQEEKLK SECFSKRTLD ENSTTRP00000008948/1-1418 HQSEAACLAA GPGIRCVWDT GSSQCVSWEL ATEAQEEKLK SECFSKGTLD bmy_07676T0/1-895 HQSEAACIAA GPGIRCVWDT GSSQCVPWEL ATEAQEEKLK SECFSNRTLD BACU016890/1-1134 HQSEAACLAA GPGIRCVWDA GSSQCVSWEL ATEAQEEKLK SECFSNRTLD 701 750 ENSBTAP00000039639/1-1415 HDRCDQLTDC YSCTANTNGC QWCNDHCVPT NHSCTEGQIS IFKYDHCPKD ENSP00000262919/1-1429 HDRCDQHTDC YSCTANTNDC HWCNDHCVPR NHSCSEGQIS IFRYENCPKD ENSTTRP00000008948/1-1418 HDRCDQHTDC YSCTANTNDC HWCHDHCVPM NHSCTEGQIS ISRYDHCPKD bmy_07676T0/1-895 HDRCDQHTDC YSCTANTNDC HWCHDHCVPM NHSCTEGQIS ISRYDHCPKD BACU016890/1-1134 HDRCDQHTDC YSCTANTNDC HWCHDHCVPM NHSCTEGQIS ISRYDHCPKD 751 800 ENSBTAP00000039639/1-1415 NPMYYCNKKT SCRSCALDQN CQWEPRNQEC IALPENICGI GWHLVGNSCL ENSP00000262919/1-1429 NPMYYCNKKT SCRSCALDQN CQWEPRNQEC IALPENICGI GWHLVGNSCL ENSTTRP00000008948/1-1418 NPMYYCNKKT SCRSCALDQN CQWEPRNQEC IALPENICGI GWHLVGNSCL bmy_07676T0/1-895 NPMYYCNKKT SCRSCALDQN CQWEPRNQEC IALPENICGI GWHLVGNSCL BACU016890/1-1134 NPMYYCNKKT SCRSCALDQN CQWEPRNQEC IALPENICGI GWHLVGNSCL 801 850 ENSBTAP00000039639/1-1415 KITTARETYD NAKLSCRNHN AFLASLTTQK KVEFVLKQLR IMQSSQSMSK ENSP00000262919/1-1429 KITTAKENYD NAKLFCRNHN ALLASLTTQK KVEFVLKQLR IMQSSQSMSK ENSTTRP00000008948/1-1418 KITTAKENYD NAKLSCRNHN AFLASLTTQK KVEFVLKQLR IMQSSQSMSK bmy_07676T0/1-895 KITTAKENYD NAKLSCRNHN AFLASLTTQK KVEFVLKQLR IMQSSQSMSK BACU016890/1-1134 KITTAKENYD NAKLSCRNHN AFLASLTTQK KVEFVLKQLR IMQSSQSMSK 851 900 ENSBTAP00000039639/1-1415 FTLTPWVGLR KINVSYWCWE DMSPFTNSSL QWMPSEPSDA GFCGILSEPS ENSP00000262919/1-1429 LTLTPWVGLR KINVSYWCWE DMSPFTNSLL QWMPSEPSDA GFCGILSEPS ENSTTRP00000008948/1-1418 LTLTPWVGLR KINVSYWCWE DMSPFTNSLL QWMPSEPSDA GFCGILSEPS bmy_07676T0/1-895 LTLTPWVGLR KINVSYWCWE DMSPFTNSLL QWMPSEPSDA GFCGILSEPS BACU016890/1-1134 LTLTPWVGLR KINVSYWCWE DMSPFTNSLL QWMPSEPSDA GFCGILSEPS 901 950 ENSBTAP00000039639/1-1415 TRGLKAATCI NPLNGSVCER PANHSAKQCR TPCALRTACG ECTSGSSECM ENSP00000262919/1-1429 TRGLKAATCI NPLNGSVCER PANHSAKQCR TPCALRTACG DCTSGSSECM ENSTTRP00000008948/1-1418 TSGLKAATCI NPLNGSVCER PANHSAKQCR TPCALRTACG ECTSGSSECM bmy_07676T0/1-895 TWGLKAATCI NPLNGSVCER PANHSAKQCR TPCALRTACG ECTSGSSECM BACU016890/1-1134 TWGLKAATCI NPLNGSVCER PANHSAKQCR TPCALRTACG ECTSGSSECM 951 1000 ENSBTAP00000039639/1-1415 WCSNMKQCVD SNAYVASFPF GQCMEWYTMS SCPPENCSGY CTCSHCLEQP ENSP00000262919/1-1429 WCSNMKQCVD SNAYVASFPF GQCMEWYTMS TCPPENCSGY CTCSHCLEQP ENSTTRP00000008948/1-1418 WCSNMKQCVD SNAYVASFPF GQCMEWYTMS SCPPENCSGY CTCSHCLEQP bmy_07676T0/1-895 WCSNMKQCVD SNAYVASFPF GQCMEWYTMS SCPPENCSGY CTCSHCLEQP BACU016890/1-1134 WCSNMKQCVD SNAYVASFPF GQCMEWYTMS -CPPENCSGY CTCSHCLEQP 1001 1050 ENSBTAP00000039639/1-1415 GCGWCTDPSN TGKGKCIEGS YKGPVKMPSQ GPTGNSYPQP LLNSSMCLED ENSP00000262919/1-1429 GCGWCTDPSN TGKGKCIEGS YKGPVKMPSQ APTGNFYPQP LLNSSMCLED ENSTTRP00000008948/1-1418 GCGWCTDPSN TGKGKCTEGS YKGPVKMPSQ APTGNSYPQP LLNSSMCLED bmy_07676T0/1-895 GCGWCTDPSN TGKGKCTEGS YKGPVKMPSQ APTGNSYPQP LLNSSMCLED BACU016890/1-1134 GCGWCTDPSN TGKGKCTEGS YKGPVKMPSQ PPTGNSYPQP LLNSSMCLED 1051 1100 ENSBTAP00000039639/1-1415 SRYNWSFIHC PACQCNGHSK CINQSICEKC ENLTTGKHCE TCISGFYGDP ENSP00000262919/1-1429 SRYNWSFIHC PACQCNGHSK CINQSICEKC ENLTTGKHCE TCISGFYGDP ENSTTRP00000008948/1-1418 SRYNWSFIHC PXXXXXXXXK CINQSICEKC ENLTTGK-CE -CISGFYGDP bmy_07676T0/1-895 SRYNWSFIHC PACQCNGHSK CINQSICEKC ENLTTGKHCE TCISGFYGDP BACU016890/1-1134 SRYNWSFIHC PACQCNGHSR CINQSICEKC ENLTTGKHCE TCISGFYGDP 1101 1150 ENSBTAP00000039639/1-1415 TNGGKCQPCR CNGHASLCNT NTGKCFCTTK GVKGDECQLC EVENRYQGNP ENSP00000262919/1-1429 TNGGKCQPCK CNGHASLCNT NTGKCFCTTK GVKGDECQLC EVENRYQGNP ENSTTRP00000008948/1-1418 TNGGKCQPCK CNGHASLCNT NTGKCFCTTK GVKGDECQLC EVENRYQGNP bmy_07676T0/1-895 TNGGKCQPCK CNGHASLCNT NTGKCFCTTK GVKGDECQLC EVENRYQGNP BACU016890/1-1134 TNGGKCQPCK CNGHASLCNT NTGKCFCTTK GVKGDECQLC EVENRYQGNP 1151 1200 ENSBTAP00000039639/1-1415 LKGTCYYTLL IDYQFTFSLS QEDDRYYTAI NFVATPDEQN RDLDMFINAS ENSP00000262919/1-1429 LRGTCYYTLL IDYQFTFSLS QEDDRYYTAI NFVATPDEQN RDLDMFINAS ENSTTRP00000008948/1-1418 LKGTCYYTLL IDYQFTFSLS QEDDRYYTAI NFVATPDEQN RDLDMFINAS bmy_07676T0/1-895 LKGTCYYTLL IDYQFTFSLS QEDDRYYTAI NFVATPDEQN RDLDMFINAS BACU016890/1-1134 LKGTCYYTLL IDYQFTFSLS QEDDRYYTAI NFVATPDEQN RDLDMFINAS 1201 1250 ENSBTAP00000039639/1-1415 KNFNLNITWA ASFSAGTQAG EEMPVVSKTN IKEYKDSFSN EKFDFRNHPN ENSP00000262919/1-1429 KNFNLNITWA ASFSAGTQAG EEMPVVSKTN IKEYKDSFSN EKFDFRNHPN ENSTTRP00000008948/1-1418 KNFNLNITWA ASFSAGTQAG EEMPVVSKTN IKEYKDSFSN EKFDFRNHPN bmy_07676T0/1-895 KNFNLNITWA ASFSAGTQAG EEMPVVSKTN IKEYKDSFSN EKFDFRNHPN BACU016890/1-1134 KNFNLNITWA ASFSAGTQAG EEMPVVSKTN IKEYKDSFSN EKFDFRNHPN 1251 1300 ENSBTAP00000039639/1-1415 ITFFVYVSNF TWPIKIQIAF SQHSNFMDLV QFFVTFFSCF LSLLLVAAVV ENSP00000262919/1-1429 ITFFVYVSNF TWPIKIQIAF SQHSNFMDLV QFFVTFFSCF LSLLLVAAVV ENSTTRP00000008948/1-1418 ITFFVYVSNF TWPIKIQIAF SQHSNFMDLV QFFVTFFSCF LSLLLVAAVV bmy_07676T0/1-895 ITFFVYVSNF TWPIKI---- ---------- ---------- ---------- BACU016890/1-1134 ITFFVYVSNF TWPIKIQIAF SQHSNFMDLV QFFVTFFR-- ---------- 1301 1350 ENSBTAP00000039639/1-1415 WKIKQSCWAS RRREQLLREM QQMASRPFAS VNVALETDEE PPDLIGGSIK ENSP00000262919/1-1429 WKIKQSCWAS RRREQLLREM QQMASRPFAS VNVALETDEE PPDLIGGSIK ENSTTRP00000008948/1-1418 WKIKQSCWAS RRREQLLREM QQMASRPFAS VNVALETDEE PPDLIGGSIK bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------- ----TQPVCS M--------- ---------- 1351 1400 ENSBTAP00000039639/1-1415 TVPKPIALEP CFGNKAAVLS VFVRLPRGLG GIPPPGQSGL AVASALVDIS ENSP00000262919/1-1429 TVPKPIALEP CFGNKAAVLS VFVRLPRGLG GIPPPGQSGL AVASALVDIS ENSTTRP00000008948/1-1418 TVPKPIALEP CFGNKAAVLS VFVRLPRGLS GIPPPGQSGL AVASALVDIS bmy_07676T0/1-895 ---------- ---------- ---------- ---------- ---------- BACU016890/1-1134 ---------- ---------- ------KSSS GTFTP----- ---------- 1401 1450 ENSBTAP00000039639/1-1415 QQMPVVYKEK SGAVRNRKQQ PPAQPGTCI ENSP00000262919/1-1429 QQMPIVYKEK SGAVRNRKQQ PPAQPGTCI ENSTTRP00000008948/1-1418 QQMPIVYKEK SGAVRNRKQQ PPAQPGTCI bmy_07676T0/1-895 ---------- ---------- --------- BACU016890/1-1134 ---------- ---------- ---------