KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:44 2014 Check: 00 .. Name: ENSP00000356033/1-731 Len: 1001 Check: 7289 Weight: 1.00 Name: ENSTTRP00000010763/1-719 Len: 1001 Check: 4031 Weight: 1.00 Name: ENSBTAP00000039684/1-716 Len: 1001 Check: 9697 Weight: 1.00 Name: bmy_13768T0/1-851 Len: 1001 Check: 6356 Weight: 1.00 Name: BACU011755/1-940 Len: 1001 Check: 59 Weight: 1.00 // 1 50 ENSP00000356033/1-731 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010763/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039684/1-716 ---------- ---------- ---------- ---------- ---------- bmy_13768T0/1-851 ---------- ---------- -------MSC FEVEEEEEE- -----KRTRA BACU011755/1-940 MEGEGPRGRE QILGTDQYSS PTDLTDLLST FCVPDTELDG GDAKMDTTKA 51 100 ENSP00000356033/1-731 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010763/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039684/1-716 ---------- ---------- ---------- ---------- ---------- bmy_13768T0/1-851 ALKGMRNSRE VKEL----WV EALGGVALKL ANALRVSLLT FSHMISR--- BACU011755/1-940 LLSSCPQRRD RKSLASAASL QQL-DLQLDL PNQQGEPILH SPVVLTQGPK 101 150 ENSP00000356033/1-731 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010763/1-719 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039684/1-716 ---------- ---------- ---------- ---------- ---------- bmy_13768T0/1-851 ---------- ---------- ---------- ---------- ----TQSQGH BACU011755/1-940 SKERHLLLFR GRLVIAKQRS SKSYRFKQKL PLSNLGVVSC DREEEQDKDK 151 200 ENSP00000356033/1-731 ---------- ----MKLRSS H--------- ---------- ---------- ENSTTRP00000010763/1-719 ---------- ----MKATSR ---------- ---------- ---------- ENSBTAP00000039684/1-716 ---------- ----MKLTSS C--------- ---------- ---------- bmy_13768T0/1-851 TGAKLIIGQS AQTLMKLTSS C--------- ---------- ---------- BACU011755/1-940 DRGLIVSGGN VVFFMMASNP CVTKFPAVPA WPSPGFLCSN SLTNFCAQSE 201 250 ENSP00000356033/1-731 ---------- ---------- -----NASKT LNANNMETLI ECQSEGDIKE ENSTTRP00000010763/1-719 ---------- ---------- -----HAXXX XXXXXXXXXX XXXXXGDIKE ENSBTAP00000039684/1-716 ---------- ---------- -----HASKT LNACDMETLI ECQSEGNIKE bmy_13768T0/1-851 ---------- ---------- -----HASKT LNASNMETLI ECRSEGDTKE BACU011755/1-940 VSKETRMTQG ISISLHLNFT RYFKSEKSKT LNASNMETLI ECRSEGDTKE 251 300 ENSP00000356033/1-731 HPLLASCESE DSICQLI--- ---------- ---------- ---------- ENSTTRP00000010763/1-719 HPLLASCESE NSLCQLI--- ---------- ---------- ---------- ENSBTAP00000039684/1-716 HPLLASCESE DNICQLI--- ---------- ---------- ---------- bmy_13768T0/1-851 HPLLASCESE DSLCQLIDSH PLLPRFFNII CPTRQTIDDN IHCLIWILAY BACU011755/1-940 HPLLASCESE DSLCQLI--- ---------- ---------- ---------- 301 350 ENSP00000356033/1-731 ---------- -----EVKKR KKVLSWPFLM RRLSPASDFS GALETDLKAS ENSTTRP00000010763/1-719 ---------- -----EIKKR KKVLNWLFLM RRLSSSSDFS GASEPELRSS ENSBTAP00000039684/1-716 ---------- -----EIKKR KKVSNWLLLM RRLSSSSDVS AASEPELKTS bmy_13768T0/1-851 QYFNLISLCF VFLAVEIKKR KKVLNWLFLM RRLSSSSDFS GASEPELKSS BACU011755/1-940 ---------- -----EIKKR KKVLNWLFLM RRLSSSSDFS GASEPELKSS 351 400 ENSP00000356033/1-731 LFDQPLSIIC GDSDTLPRPI QDILTILCLK GPSTEGIFRR AANEKARKEL ENSTTRP00000010763/1-719 LFDQPLSAIC SDNDTLPRPI QDILTILCLK GPSTEGIFRK AANEKARKEL ENSBTAP00000039684/1-716 LFDQPLSAIC SDN-TLPGPI QDILTILCLK GPSTEGIFRK AANEKARKEL bmy_13768T0/1-851 LFDQPLSAIC SDNDTPPRPI QDILTILCLK GPSTEGIFRK AANEKARKEL BACU011755/1-940 LFDQPLSAIC SDNDTPPRPI QDILTILCLK GPSTEGIFRK AANEKARKEL 401 450 ENSP00000356033/1-731 KEELNSGDAV DLERLPVHLL AVVFKDFLRS IPRKLLSSDL FEEWMGALEM ENSTTRP00000010763/1-719 KEELNSGGVV DLKSLPVHLL AVVFKDFLRS IPLKLLSCDL FEEWMGALEK ENSBTAP00000039684/1-716 KEELSSGGVV DLRSLPVHLL AVVLKDFLRS IPLKLLSCDL FEEWMGALAK bmy_13768T0/1-851 KEELNSGGVV DLKSLPVHLL AVVFKDFLRS IPLKLLSCDL FEEWMGALEK BACU011755/1-940 KEELNSGGVV DLKSLPVHLL AVVFKDFLRS IPLKLLSCDL FEEWMGALEK 451 500 ENSP00000356033/1-731 QDEEDRIEAL KQVADKLPRP NLLLLKHLVY VLHLISKNSE VNRMDSSNLA ENSTTRP00000010763/1-719 QSEEDRIEAL KXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000039684/1-716 QSEEDRIEAL KQVADKLPRP NHLLLKHLVS VLHVISKNSE VNRMDASNLA bmy_13768T0/1-851 QSEEDRIEAL KQVADKLPQP NHLLLKHLVS VLYVISKNSE VNKMDASNLA BACU011755/1-940 QSEEDRIEAL KQVADKLPQP NHLLLKHLVS VLHVISKNSE VNKMDASNLA 501 550 ENSP00000356033/1-731 ICIGPNMLTL ENDQSLSFEA QKDLNNKVKT LVEFLIDNCF EIFGENIPVH ENSTTRP00000010763/1-719 XXXXXXXXXX XXXXXXXXXX XXXXXXXVKT LVEFLIDNCF EIFGENMPGH ENSBTAP00000039684/1-716 ICIGPNVLSP ENEHNLSLEA RRDLNDKVKT LVEFLIDNCF EIFGEDFPAH bmy_13768T0/1-851 ICIGPNVLSP ENEQDLSFEA RRDLNDKVKT LVEFLIDNCF EIFGENMPGH BACU011755/1-940 ICIGPNVLSP ENEQNLSFEA RRDLNDKVKT LVEFLIDNCF EIFGENMPGH 551 600 ENSP00000356033/1-731 SSITSDDSLE HTDSSDVSTL QNDSAYDSND PDVESNSSSG ISSPSRQPQV ENSTTRP00000010763/1-719 SRIASDDSLE HTDSSDVSTL QNDSAYDSND PDPDAEPS-- -RSLSRWPPG ENSBTAP00000039684/1-716 SRIASDDSLE HTDSSDMSTL QNDSAYDSND PDHDVEPA-- -GSPSSQPPG bmy_13768T0/1-851 SRIASDDSLE HTDSSDVSTL QNDSAYDSND PDPDAEPSSA GGSLSRWPPG BACU011755/1-940 SRIASDDSLE HTDSSDVSTL QNDSAYDSND PDPDAEPSSA GGSLSRWPPG 601 650 ENSP00000356033/1-731 PMATAA-GLD SAGPQDAREV SPEPIVSTVA RLKSSLAQPD RRYSEPSMP- ENSTTRP00000010763/1-719 SSDPAA-SLE PRGPPHPW-- --EPVLSSAP RLKASLRQPD RRYSDPSTAA ENSBTAP00000039684/1-716 PPELAAGGVE PRAPLRPW-- --EPVVNTTA RLKGFLGQPD RRYSDPSTTF bmy_13768T0/1-851 SSDPAA-GLE PRGPPHPW-- --EPVLSSAP RLKGSLGQPD RRYSDPSTAA BACU011755/1-940 SSDPAA-GLE PRGPPHPW-- --EPVLSRAP RLKGSLGQPD RRYSDPSTAA 651 700 ENSP00000356033/1-731 SSQECLESRV TNQTLTKSEG DFP-VPRVGS RLESEEAEDP FPEEVFPAVQ ENSTTRP00000010763/1-719 SSKECLEGRR ANPKLTRSED DFT-AAQAAP CFASEEAEDP FPEEVFPVAE ENSBTAP00000039684/1-716 SP-ECLEGRR ANPKLTRSED DFTAVAQAAS RFAGEEAEDP FPEEVFPAAE bmy_13768T0/1-851 SSQECLEGRK ANPKLTRSED DFT-VTQAAP RFASEEPEDP FPEEVFPAAE BACU011755/1-940 SSQECLEGRK ANPKLTRSED DFT-VTQAVP RFASEEPEDP FPEEVFPAAE 701 750 ENSP00000356033/1-731 GKTKRPVDLK IKNLAPGSVL PRALVLKAFS SSSLDASSDS SPVASPSSPK ENSTTRP00000010763/1-719 GKTQGPRDPR VQSPAQGLVS ACTLTPKAVS SGSPDVLSDS SVLASPSSPK ENSBTAP00000039684/1-716 GRAQRPRDLG EWSPTQGSVS PCARVPKAPS SSSLDAFSDS SPLASPSSPK bmy_13768T0/1-851 GKTRRPRDPR VQSPAQGLVS PCTLAPKAAS SGSLDALSDS SRLASPSTPK BACU011755/1-940 GKTRRPRDPR VQSQAQGLVS PCTLAPKAAS SGSLDALSDS SRLASPSTPK 751 800 ENSP00000356033/1-731 RNFFSRHQSF TTKTEKGKPS REIKKHSMSF TFAPHKKVLT KNLSAG-SGK ENSTTRP00000010763/1-719 RNFFTRHQSF -TKTEKSKSD REIKKHSMSF SFASHQKALT KTRSSAVAAK ENSBTAP00000039684/1-716 RNFFTRHQSF -TKAEKSKPN REIKKHSMSF SFASHQRGLT KMRSFG-ATK bmy_13768T0/1-851 RNFFTRHQSF -TKTEKSKPD REIKKHSMSF SFASHQKVST KTRSSAVAAK BACU011755/1-940 RNFFTRHQSF -TKTEKSKPD REIKKHSMSF SFASHQKVST KTRSSAAAAK 801 850 ENSP00000356033/1-731 SQDFTRDHVP RGVRKESQLA GRIVQENGCE THNQTARGFC LRPHALSVDD ENSTTRP00000010763/1-719 SKGCARDQVK KGLKKESQLA GRIVQENLPD THGQTAVDFN SGAHSLSVEN ENSBTAP00000039684/1-716 SKGCPRDQEK RGSKKESQLA GRIVQESSSD APGQAVLGFN SGAYALSVED bmy_13768T0/1-851 SQGCTRDQVK KGLKKESQLA GRIVQENLSD VHGQTAVDFN SGAHSLSVEN BACU011755/1-940 SQGCTRDQVK KGLKKESQLA GRIVQENLSD VHGQTAVDFN SGAHSLSVEN 851 900 ENSP00000356033/1-731 VFQGADWERP GSPPSYEEAM QGPAARLVAS ESQTVGSMTV GSMRARMLEA ENSTTRP00000010763/1-719 TFQPVDQRSP GGPPSYEEAI -----RYQAL ELATYGSQTV GSMRARMLSL ENSBTAP00000039684/1-716 VFRLVDQRHP GRPPSYEEAV -----RLQAL ELAPRGGQTV GSLRARVLSL bmy_13768T0/1-851 VFQLVDQRSP GGPPSYEEAI -----RHQAL ELAAYGSQTV GSMRARMLSL BACU011755/1-940 VFQLVDQRSP GGPPSYEEAI -----RHQAL ELATYRSQTV GSMRARMLSL 901 950 ENSP00000356033/1-731 HCLLPPLPPA HHVEDSRHRG SKEPLPGHGL SPLPERWKQS RTVHASGDSL ENSTTRP00000010763/1-719 DARLPPPLPV HHGGDSRNIC SQEPLXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000039684/1-716 DAGLLPPLPA HPHGDSRNIR GPEPLDGLRG GLGTETWRQS ---CAPKDTA bmy_13768T0/1-851 DARLPPPLPV HHGGDSRNTC SQEPLDGPRL WPRTESWKQS RTVCASIDMA BACU011755/1-940 DARLRPPLPV HHRGDSRNTC GQEALDGPRL WPRTESWKQS RTVCASIDMA 951 1000 ENSP00000356033/1-731 GHVSGPGRPE LLPLRTVSES VQRNKRDCLV RRCSQPVFEA DQFQYAKESY ENSTTRP00000010763/1-719 XXXXXXXXXX XXXXXXXXXX XQKNKQALLA RRCSQPVFDA DQFRFAKESY ENSBTAP00000039684/1-716 GRVMVPGTSE LQRLRTASES QQKGRQAVLA RRCSQPVFDA EQLRFAKESY bmy_13768T0/1-851 GQVTVTRRPE LHRPRTVSES QQKNKQALLA RRCSQPVFDA DQFRFAKESY BACU011755/1-940 GQVTVTRRPE LHRPRTVSES QQKNKQALLA RRCSQPVFDA DQFRFAKESY 1001 1050 ENSP00000356033/1-731 I ENSTTRP00000010763/1-719 I ENSBTAP00000039684/1-716 I bmy_13768T0/1-851 I BACU011755/1-940 I