KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:51 2014 Check: 00 .. Name: ENSP00000333769/1-385 Len: 502 Check: 4612 Weight: 1.00 Name: ENSBTAP00000039862/1-271 Len: 502 Check: 9928 Weight: 1.00 Name: ENSTTRP00000010721/1-384 Len: 502 Check: 9267 Weight: 1.00 Name: bmy_06634T0/1-269 Len: 502 Check: 2873 Weight: 1.00 Name: BACU006548/1-269 Len: 502 Check: 2686 Weight: 1.00 // 1 50 ENSP00000333769/1-385 MAAALFVLLG FALLGTHGAS GA-------- ---------- ---------- ENSBTAP00000039862/1-271 MAAGQIAVLG LVLLSAQGGF GA-------- ---------- ---------- ENSTTRP00000010721/1-384 MAAVRL-MLG LVLLSAQGGF GAXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06634T0/1-269 MAAARLVVLG LVLLSAQGDF GA-------- ---------- ---------- BACU006548/1-269 MEAVRLVVLG LVLLSAQGDF GA-------- ---------- ---------- 51 100 ENSP00000333769/1-385 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039862/1-271 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010721/1-384 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06634T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU006548/1-269 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000333769/1-385 ---------- ---------- ---------- -------AGF VQAPLSQQRW ENSBTAP00000039862/1-271 ---------- ---------- ---------- --------G- ---------- ENSTTRP00000010721/1-384 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXX- ---------- bmy_06634T0/1-269 ---------- ---------- ---------- --------G- ---------- BACU006548/1-269 ---------- ---------- ---------- --------G- ---------- 151 200 ENSP00000333769/1-385 VGGSVELHCE AVGSPVPEIQ WWFEGQGPND TCSQLWDGAR LDRVHIHATY ENSBTAP00000039862/1-271 ---------- ---------- ---------- --SRIW---- ---------- ENSTTRP00000010721/1-384 ---------- ---------- ---------- --STIW---- ---------- bmy_06634T0/1-269 ---------- ---------- ---------- --SRIW---- ---------- BACU006548/1-269 ---------- ---------- ---------- --SRIW---- ---------- 201 250 ENSP00000333769/1-385 HQHAASTISI DTLVEEDTGT YECRASNDPD RNHLTRAPRV KWVRAQAVVL ENSBTAP00000039862/1-271 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010721/1-384 ---------- ---------- ---------- ---------- ---------- bmy_06634T0/1-269 ---------- ---------- ---------- ---------- ---------- BACU006548/1-269 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000333769/1-385 VLEPGTVFTT VEDLGSKILL TCSLNDSATE VTGHRWLKGG VVLKEDALPG ENSBTAP00000039862/1-271 --------TN IDNDGSKTRL TCALNHSATE IVGHRWVKGG KVLKEDALPD ENSTTRP00000010721/1-384 --------TS IDDDGSRTRL TCALNHSATE IVGHRWVKGG KVLKEDALPG bmy_06634T0/1-269 --------TS VDDDGSRTRL TCALNHSATE IVGHRWVKGG KVLKEDALPG BACU006548/1-269 --------TS IDDDGSRTRL TCALNHSATE IVGHRWVKGG KVLKEDALPG 301 350 ENSP00000333769/1-385 QKTEFKVDSD DQWGEYSCVF LPEPMGTANI QLHGPPRVKA VKSSEHINEG ENSBTAP00000039862/1-271 LKTEYEVDSE DRSGQYSCIF LPEHAGRTDL EVKGPPSIKA VKKSEHATEG ENSTTRP00000010721/1-384 LRTEYDVDSD DRSGQYSCIF LPEHAGRSDL QVKGPPSVKA VKKSEHATEG bmy_06634T0/1-269 LRTEYDVDSD DRSGQYSCIF LPEHAGRTDL EVKGPPSVKA VKKSEHATEG BACU006548/1-269 LRTEYDVDSD DRSGQYSCIF LPEHAGRTDL EVKGPPSVKA VKKSEHATEG 351 400 ENSP00000333769/1-385 ETAMLVCKSE SVPPVTDWAW YKITDSEDKA LMNGSESRFF VSSSQGRSEL ENSBTAP00000039862/1-271 ETVILVCKSD SFPPVTNWLW YKESESGDQV ITNSTQSKFF VVSSESRTEL ENSTTRP00000010721/1-384 ETVVLACKSD SFPPVANWQW SKMTDSGDQA IANSSQHKFF VVSSETRTEL bmy_06634T0/1-269 ETVVLACKSD SFPPIADWLW SKITDSGDQA IANSSQNKFF VVSSETRTEL BACU006548/1-269 ETVVLACKSD SFPPVVDWLW SKMTDSGDQA IANSSQNKFF VVSSETRTEL 401 450 ENSP00000333769/1-385 HIENLNMEAD PGQYRCNGTS SKGSDQAIIT LRVRSHLAAL WPFLGIVAEV ENSBTAP00000039862/1-271 HIPNVDLKED PGKYVCNGTN LEGTSQAAIT LRVRNRFAAL WPFLGIVAEV ENSTTRP00000010721/1-384 HIPDLDLSSD PGKYVCNGTS SEGSGQAVIT LRVRNRFAAL WPFLGIVAEV bmy_06634T0/1-269 HIPDLDLSSD PGKYVCNGTN SEGAGQAVIT LRVRNRFAAL WPFLGIVAEV BACU006548/1-269 HIPDLDLSSD PGKYVCNGTN SEGAGQAVIT LRVRNRFAAL WPFLGIVAEV 451 500 ENSP00000333769/1-385 LVLVTIIFIY EKRRKPEDVL DDDDAGSAPL KSSGQHQN-- DKGKNVRQRN ENSBTAP00000039862/1-271 LVLVTIIFIY EKRRKPDEVL DDEDIGSAPL KSSGNPLNDK DKDKNVRQRN ENSTTRP00000010721/1-384 LVLVTIIFIY EKRRKPDEVL DDEDAGSAPL KSSGHHVN-- DKDKNVRQRN bmy_06634T0/1-269 LVLVTVIFIY EKRRKPDEVL DDEDAGSAPL KSSGHHVN-- DKDKNVRQRN BACU006548/1-269 LVLVTIIFIY EKRRKPDEVL DDEDAGSAPL KSSGHHVN-- DKDKNVRQRN 501 550 ENSP00000333769/1-385 SS ENSBTAP00000039862/1-271 SS ENSTTRP00000010721/1-384 SS bmy_06634T0/1-269 SS BACU006548/1-269 SS