KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:53 2014 Check: 00 .. Name: ENSTTRP00000009971/1-650 Len: 1274 Check: 5304 Weight: 1.00 Name: bmy_11660T0/1-521 Len: 1274 Check: 4150 Weight: 1.00 Name: BACU004567/1-1252 Len: 1274 Check: 6635 Weight: 1.00 Name: ENSP00000394352/1-682 Len: 1274 Check: 8574 Weight: 1.00 Name: ENSBTAP00000039875/1-685 Len: 1274 Check: 3860 Weight: 1.00 // 1 50 ENSTTRP00000009971/1-650 MLACLTRGNL LDVLQEGFNE QQLQAYVAWV NAQLKKRPTV ---------- bmy_11660T0/1-521 ---------- ---------- QQLQAYVAWV NAQLKKRPTV ---------- BACU004567/1-1252 ---------- ---------- MGSQARRTLK QQQQQQNGTK GHDPTGHTYE ENSP00000394352/1-682 MLACLTRGNL LDVLQEGFNE QQLQAYVAWV NAQLKKRPAV ---------- ENSBTAP00000039875/1-685 HTPCLTIFLS LKLLLLSLGI QQLQAYVAWV NAQLKKRPAV ---------- 51 100 ENSTTRP00000009971/1-650 ----KPV-QD LRQDLRDGVI LAYLIEI--- ---------- ---------- bmy_11660T0/1-521 ----KPV-QD LRQDLRDGVI LAYLIEI--- ---------- ---------- BACU004567/1-1252 QVLKQPVSQE KSQGLRSEES SLHYADIQVC SLTQTRSAQE HDGLSANRNP ENSP00000394352/1-682 ----KPV-QD LRQDLRDGVI LAYLIEI--- ---------- ---------- ENSBTAP00000039875/1-685 ----KPV-QD LRQDLRDGVI LAYLIEI--- ---------- ---------- 101 150 ENSTTRP00000009971/1-650 ---------- ----VXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_11660T0/1-521 ---------- ----VAGEKL SGVQLSPSNQ QEMKNNVEKV LQFVASKKIR BACU004567/1-1252 LSRDPPTGCS GLASLTGEKL SGVQLSPSNQ QEMKNNVEKV LQFVASKKIR ENSP00000394352/1-682 ---------- ----VAGEKL SGVQLSPGNQ QEMKNNVEKV LQFVASKKIR ENSBTAP00000039875/1-685 ---------- ----VAGEKL SGVQLSPSNQ QEMKNNVEKV LQFVASKKIR 151 200 ENSTTRP00000009971/1-650 XXXXXXX--- ------XIVE GNLKSIMRLV LALAAHFKPG SSRTVNQGQD bmy_11660T0/1-521 MHQTSAK--- ------DIVE GNLKSIMRLV LALAAHFKPG SSRTVSQGQD BACU004567/1-1252 MHQTSAKGPL GLFRSSDIVE GNLKSIMRLV LALAAHFKPG SSRTVSQGQD ENSP00000394352/1-682 MHQTSAK--- ------DIVD GNLKSIMRLV LALAAHFKPG SSRTVNQGRD ENSBTAP00000039875/1-685 MHQTSAK--- ------DIVE GNLKSIMRLV LALAAHFKPG SGRTVSQGRD 201 250 ENSTTRP00000009971/1-650 ARAPLQSHQP HCATAVAQGA AAALADVCHD MSRSGRDVFR YRQRNSSVDE bmy_11660T0/1-521 ARTPLQSHQP HCATAVAQGA AAALADVCHD MSRSGRDVFR YRQRNSSVDE BACU004567/1-1252 ARAPLQSHQP HCATAVAQGA AAALADVCHD MSRSGRDVFR YRQRNSSVDE ENSP00000394352/1-682 SRAPLQSHRP HCATAVAQGA AAALADVCHD MSRSGRDVFR YRQRNSSMDE ENSBTAP00000039875/1-685 AGAPLQTHQP HCATAVAQGA AAALADVCHD MSRSGRDVFR YRQRNNSMDE 251 300 ENSTTRP00000009971/1-650 EIGNPCWSVR ALVQQYEGQQ RSPSESSCS- -SLTSPSPIH SAKSDSIITQ bmy_11660T0/1-521 EIENPCWSVR ALVQQYEGQQ RSPSGSSCS- -SLTSPSPIH SAKSDSIITQ BACU004567/1-1252 EIENPCWSVR ALVQQYEGQQ RSPSESSCS- -SLTSPSPIH SAKSDSIITQ ENSP00000394352/1-682 EIENPYWSVR ALVQQYEGQQ RSPSESSCS- -SLTSPSPIH SAKSESIITQ ENSBTAP00000039875/1-685 EIENPCWSVR ALVQQYEGQQ RSPSESSCSS HSLTSPSPIH SAKSESVITQ 301 350 ENSTTRP00000009971/1-650 LEEKADFVII PSEGIENKTE ETDSPLSRDW RPG-PRPYLE TSWEEQLLEQ bmy_11660T0/1-521 SEEKADFVII PSEGIENKTE ETDSPLSRDW RQGSPRPYLE TSWEEQLPYC BACU004567/1-1252 SEEKADFVII PSEGIENKTE ETDSPLSRDW RQGSPRPYLE ASWEEQLLEQ ENSP00000394352/1-682 SEEKADFVII PAEGIENRTE GTDSPLSRDW RPG-PGTYLE TSWEEQLLEQ ENSBTAP00000039875/1-685 SEERADFVII PSEGVENRTE ETDSPLPRDW RPGSPRTYLE TSWEEQLLEQ 351 400 ENSTTRP00000009971/1-650 QEHLEKEMEE AKKMISGLQX XXXXXSLPED EQER-LALCE SGVNPEEQLI bmy_11660T0/1-521 S------MDP YPKMNR---- ---RGPWPS- ---------- ---------- BACU004567/1-1252 QEHLEKEMEE AKKMISGLQA LLLNGSLPED EQERPLALCE PGVNPEEQLI ENSP00000394352/1-682 QEYLEKEMEE AKKMISGLQA LLLNGSLPED EQERPLALCE PGVNPEEQLI ENSBTAP00000039875/1-685 QEHLEKEMEE AKKMISGLQA LLLNGSLPED EQERPLALCE PGVNPEEQLI 401 450 ENSTTRP00000009971/1-650 IIQSRLDQSM EENQDLKKEL LKYKQEGRNL QGIKDALQQR LTQQDTSVLQ bmy_11660T0/1-521 ---------- -------KEL LKYKQEARNL QGIKDALQQR LTQQDTSVLQ BACU004567/1-1252 IIQSRLDQSM EENQDLKKEL LKYKQEARNL QGIKDALQQR LTQQDTSVLQ ENSP00000394352/1-682 IIQSRLDQSM EENQDLKKEL LKCKQEARNL QGIKDALQQR LTQQDTSVLQ ENSBTAP00000039875/1-685 IIQSRLDQSI EENQDLKKEL LKYKQEARNL QGIKDALQQR LTQQDASVLQ 451 500 ENSTTRP00000009971/1-650 LKQELLRANM DKDELHNQNV DLQRKLDERN RLLGEYKKEL WQKDR-LKQY bmy_11660T0/1-521 LKQALLRANM DKDELHNQNV DLQRKLDERN RLLGEYKKEL GQKDRLLKQY BACU004567/1-1252 LKQELLRANM DKDELHNQNV DLQRKLDERN RLLGEYKKEL GQKDRLLKQY ENSP00000394352/1-682 LKQELLRANM DKDELHNQNV DLQRKLDERN RLLGEYKKEL GQKDRLLQQH ENSBTAP00000039875/1-685 LKQELLRANM DKDELHNQNV DLQRKLEERN RLLGEYKKEL GQKDRLLLQN 501 550 ENSTTRP00000009971/1-650 QAKLEEALRK LSEASYQQVD LE----HKDV LLAHCMKREA EEVTHCSSHN bmy_11660T0/1-521 QAKLEEALRK LSEASYQQVD LERELEHKDV LLAHCMKREA EEVTHCSSHN BACU004567/1-1252 QAKLEEALRK LSEASYQQVD LERELEHKDV LLAHCMKREA EEVTHCSSHN ENSP00000394352/1-682 QAKLEEALRK LSDVSYHQVD LERELEHKDV LLAHCMKREA DEATNYNSHN ENSBTAP00000039875/1-685 QAKLEEALRK LSEASYQQVD LERELEHKDV LLAHCMKREA DEVTNYNNHS 551 600 ENSTTRP00000009971/1-650 PQSNGFLLPV AGKGAASVTH RGSSDLQLVR DALRSLRNSF SGHDPQHHTI bmy_11660T0/1-521 PQSNGFLLPV AGKGAASVTH RGSSDLQLVR DALRSLRNSF SGHDPQHHTI BACU004567/1-1252 PQSNGFLLPV AGKGAASVTH RGSSDLQLVR DALRSLRNSF SGHDPQHHTI ENSP00000394352/1-682 SQSNGFLLPT AGKGATSVSN RGTSDLQLVR DALRSLRNSF SGHDPQHHTI ENSBTAP00000039875/1-685 SQSNGFLLPA AGKGAASVVH RGSSDLQLVR DALRSLRTSF SGHDPQHHTI 601 650 ENSTTRP00000009971/1-650 DSLEQGISSL MERLHAMETQ RKQDRRVRGK SPRTQAGSEY RESWPPNSKL bmy_11660T0/1-521 DSLEQGISSL MERLHAMETQ RKQDRRV--- -------TLF R--W------ BACU004567/1-1252 DSLEQGISSL MERLHAMETQ RKQDRRVRGK SPRTQAVSEY RESWPPNSKL ENSP00000394352/1-682 DSLEQGISSL MERLHVMETQ KKQERKVRVK SPRTQVGSEY RESWPPNSKL ENSBTAP00000039875/1-685 DSLEQGISSL MERLHAVETQ RKQERRVRGK SPRTQAGSEY RESWPPNSKL 651 700 ENSTTRP00000009971/1-650 SHSQSSPTVS SACTKVLYFT DRSLTPFMVN IPKRLGEVTL KDFKAAIDRE bmy_11660T0/1-521 ---------- -----CFSYS PK-------- ------EAGL INFNAD---E BACU004567/1-1252 PHSQSSPTVS SACTKVLYFT DRSLTPFMVN IPKRLGEVTL KDFKAAIDRE ENSP00000394352/1-682 PHSQSSPTVS STCTKVLYFT DRSLTPFMVN IPKRLEEVTL KDFKAAIDRE ENSBTAP00000039875/1-685 PHSQSSPTVS SACTKVLYFT DRSLTPFMVN IPKRLGEVTL KDFKAAIDRE 701 750 ENSTTRP00000009971/1-650 GNHRYHFKAL DPEFGTVKEE ---------- ---------- ---------- bmy_11660T0/1-521 GSAKI----- ---------- ---------- ---------- ---------- BACU004567/1-1252 GNHRYHFKAL DPEFGTVKEE VPLPSLSPTM QAGTIARWEK KEGEKINEGE ENSP00000394352/1-682 GNHRYHFKAL DPEFGTVKEE IFHDDDAIPG WEGKIVAWVE EDHGEN---- ENSBTAP00000039875/1-685 GNHRYHFKAL DPEFGTVKEE VFHDDDAIPG WEGKIVAWVE EDHGEN---- 751 800 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 LIAEVETDKA TVGFESLEEC YMAKILVAEG TRDVPIGAII CITVEKPEDI ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 801 850 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 EAFKNYTLDS SAAPTPQAAP APAPAAAAPS PAPPAQAPGS SYPPHMQVVL ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 851 900 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 PALSPTMTMG TVQRWEKKVG EKLSEGDLLA EIETDKATIG FEAQEEGYLA ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 901 950 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 KILIPEGTRD VPLGTPLCII VEKEADIPAF ADYWPTEVTD LKPPAPPPTP ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 SPVAPVPPTP QPVAPAPSAT RPATPAGPKG RLFVSPLAKK LATEKGIDLT ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 QVKGTGPDGR IIKKDVDSFV PTKAAPTPAA AVSPPSPGVA PVPTGVFTDI ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 PVSNIRRVIA QRLMQSKQTI PHYYLSIDVN MGEVLLVRKE LNKMLEGRSK ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 ISVNDFIIKA SALSCLKVPE ANSSWLDTVI RQNHVVDISV AVSTPAGLIT ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 PIVFNAHIKG LETIANDVVS LATKAREGKL QPHEFQGGTF TISNLGMFGI ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000009971/1-650 ---------- ---------- ---------- ---------- ---------- bmy_11660T0/1-521 ---------- ---------- ---------- ---------- ---------- BACU004567/1-1252 KNFSAIINPP QACILAIGAS EDRLVPADNE KGFDVASMMS VTLSCDHRVV ENSP00000394352/1-682 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000039875/1-685 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000009971/1-650 ---------- ---------- ---- bmy_11660T0/1-521 ---------- ---------- ---- BACU004567/1-1252 DGAVGAQWLA EFRKYLEKPI TMLL ENSP00000394352/1-682 ---------- ---------- ---- ENSBTAP00000039875/1-685 ---------- ---------- ----