KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:54 2014 Check: 00 .. Name: ENSP00000260283/1-1191 Len: 1221 Check: 5595 Weight: 1.00 Name: ENSBTAP00000039881/1-1123 Len: 1221 Check: 3569 Weight: 1.00 Name: ENSTTRP00000014615/1-1190 Len: 1221 Check: 4914 Weight: 1.00 Name: bmy_22271T0/1-1087 Len: 1221 Check: 6253 Weight: 1.00 Name: BACU004578/1-1057 Len: 1221 Check: 3363 Weight: 1.00 // 1 50 ENSP00000260283/1-1191 MEAMSPQQET LGGQPGRSSS LTGVSRLAGG SCTKKKMKTL AERRRSAPSL ENSBTAP00000039881/1-1123 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014615/1-1190 MEAMSPQQET LGGQPARSSS LTGVSRIAGA PGTKKKMKTL AERRRSAPSL bmy_22271T0/1-1087 ---------- ---------- ---------- ---------- ---------- BACU004578/1-1057 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000260283/1-1191 ILDKALQKRP TTRDSPSASV DTCTFLSSLV CSNRTLLIDG RAELKRGLQR ENSBTAP00000039881/1-1123 ---------- --RESPSASL DTCAFLSSFV CSSRTLLIDG RVELKRGLQR ENSTTRP00000014615/1-1190 ILDKALQKRP STKESPSASV DTCAFLSSFL CSNRTLLIDG RVELKRGLQR bmy_22271T0/1-1087 ---------- ---------- ---------- ---------- ---------- BACU004578/1-1057 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000260283/1-1191 QERHLFLFND LFVVAKIKYN NNFKIKNKIK LTDMWTASCV DEVGEGNTNA ENSBTAP00000039881/1-1123 QERHLFLFND LFVVAKIKYN NNFKIKNKIK LSDMWTASCV DEVGEGNTNA ENSTTRP00000014615/1-1190 QERHLFLFND LFIVAKIKYN NNFKIKNKIK LSDMWTASCV DEVGEGNTNA bmy_22271T0/1-1087 ---------- ---------- ---------- ---MWTASCV DEVGEGNTNA BACU004578/1-1057 ---------- ---------- ---------- ---MWTASCV DEVGEGNTNA 151 200 ENSP00000260283/1-1191 MKSFVLGWPT VNFVATFSSP EQKDKWLSLL QRYINLEKEK DYPKSIPLKI ENSBTAP00000039881/1-1123 TKSFVLGWPT VNFVATFSSP EQKDKWLSLL QRYINLEKEK DYPKSIPLKI ENSTTRP00000014615/1-1190 LKSFVLGWPT VNFVATFSSP EQKDRWLSLL QRYINLEKEK DYPKSIPLKI bmy_22271T0/1-1087 LKSFVLGWPT VNFVATFSSP EQKDRWLSLL QRYINLEKEK DYPKSIPLKI BACU004578/1-1057 LKSFVLGWPT VNFVATFSSP EQKDRWLSLL QRYINLEKEK DYPKSIPLKI 201 250 ENSP00000260283/1-1191 FAKDIGNCAY SKTITVMNSD TANEVINMSL PMLGITGSER DYQLWVNSGK ENSBTAP00000039881/1-1123 FAKDIGNCAY SKTITVTNSD TANEVINMSL PMLGITGSEK EYQLWVNSGK ENSTTRP00000014615/1-1190 FAKDIGNCAY SKTITVTNSD TANEVINMSL PMLGITGSER EYQLWVNSGK bmy_22271T0/1-1087 FAKDIGNCAY SKTITVTNSD TANEVINMSL PMLGITGSER EYQLWVNSGK BACU004578/1-1057 FAKDIGNCAY SKTITVTNSD TANEVINMSL PMLGITGSER EYQLWVNSGK 251 300 ENSP00000260283/1-1191 EEAPYPL--- ---------- ---------- -------IGH EYPYGIKMSH ENSBTAP00000039881/1-1123 EEAPYPL--- ---------- ---------- -------IGH EYPYGIKMSH ENSTTRP00000014615/1-1190 EEAPYPL--- ---------- ---------- -------IGH EYPYGIKMSH bmy_22271T0/1-1087 EEAPYPLIVF EFPVPFPTYY LSLWKTIYNP IMPQSINIRH EYPYGIKMSH BACU004578/1-1057 EEAPYPL--- ---------- ---------- -------IGH EYPYGIKMSH 301 350 ENSP00000260283/1-1191 LRDSALLTPG SKDSTTPFNL QEPFLMEQLP REMQCQFILK PSRLAAAQQL ENSBTAP00000039881/1-1123 LRDTALLTQG SKDSPTPSNF QEPFLMEQLP REMQCQFILK PSRLAVTQQL ENSTTRP00000014615/1-1190 LRDTTLLTQG SKDSPTPSNF QEPFLMEQLP REMQCQFILK PSRLAVAQQL bmy_22271T0/1-1087 LRDTALLTQG SKDSPTPSNF QEPFLMEQLP REMQCQFILK PSRLAVAQQL BACU004578/1-1057 LRDTALLTQG SKDSPTPSNF QEPFLMEQLP REMQCQFILK PSRLAVAQQL 351 400 ENSP00000260283/1-1191 SDSGHKTFKR RRSIINWAFW RGSSTHLDNL PSSPTSPMPG QLFGISLPNI ENSBTAP00000039881/1-1123 SDSGQKTFKR RRSIINWAFW RGSSIHLDNL PVSPTSPIPG QLFGVSLPDI ENSTTRP00000014615/1-1190 SDSGQKTFKR RRSIINWAFW RGSSTHLDNL PMSPTSPVPG QLFGVSLPNI bmy_22271T0/1-1087 SDSGQKTFKR RRSIINWAFW RGSSTHLDNL PMSPTSPVPG QLFGVSLPNI BACU004578/1-1057 SDSGQKTFKR RRSIINWAFW RGSSTHLDNL PMSPTSPVPG QLFGVSLPNI 401 450 ENSP00000260283/1-1191 CENDNLPKPV LDMLFFLNQK GPLTKGIFRQ SANVKSCREL KEKLNSGVEV ENSBTAP00000039881/1-1123 CENDNLPKAV LDMLLFLNQK GPLTKGIFRQ SANVKSCREL KEKLNSGAEV ENSTTRP00000014615/1-1190 CENDNLPKAV LDMLFFLNQK GPLTKGIFRQ SANVKSCREL KEKLNSGAEV bmy_22271T0/1-1087 CENDNLPKAV LDMLFFLNQK GPLTKGIFRQ SANVKSCREL KEKLNSGAEV BACU004578/1-1057 CENDNLPKAV LDMLFFLNQK GPLTKGIFRQ SANVKSCREL KEKLNSGAEV 451 500 ENSP00000260283/1-1191 HLDCESIFVI ASVLKDFLRN IPGSIFSSDL YDHWVSVMDQ GNDEEKINTV ENSBTAP00000039881/1-1123 QLDCESIFVI ASVLKDFLRN IPGSIFSSDL YDHWVCVMDQ GNDEEKINAV ENSTTRP00000014615/1-1190 QLDCESIFVI ASVLKDFLRN IPGSTFSSDL YDHWVCVMDQ GNDEEKINAV bmy_22271T0/1-1087 QLDCESIFVI ASVLKDFLRN IPGSIFSSDL YDHWVCVMDQ GNDEEKINAV BACU004578/1-1057 QLDCESIFVI ASVLKDFLRN IPGSIFSSDL YDHWVCVMDQ GNDEEKINAV 501 550 ENSP00000260283/1-1191 QRLLDQLPRA NVVLLRYLFG VLHNIEQHSS SNQMTAFNLA VCVAPSILWP ENSBTAP00000039881/1-1123 QRLLDQLPRA NVLLLRYLFG LLHNIEQHSS SNQMTAFNLA VCIAPSILWP ENSTTRP00000014615/1-1190 QRLLDQLPRA NVILLRYLFG VLYNIEQHSS SNQMTAFNLA VCIAPSILWP bmy_22271T0/1-1087 QRLLDQLPRA NVILLRYLFG VLYNIEQHSS SNQMTAFNLA VCIAPSILWP BACU004578/1-1057 QRLLDQLPRA NVILLKYLFG VLYNIEQHSS SNQMTAFNLA VCIAPSILWP 551 600 ENSP00000260283/1-1191 PASSSPELEN EFTKKVSLLI QFLIENCLRI FGEEITSLFR EVSVRCDTRE ENSBTAP00000039881/1-1123 PTSSSPELEN EFTKKVSLLI QFLIENCCRI FGEEITSLLG EVSVRCDTRE ENSTTRP00000014615/1-1190 PTSSSPELEN EFTKKVSLLI QFLIENCCRI FGEEITSLLG EVSVRCDTRE bmy_22271T0/1-1087 PTSSSPELEN EFTKKVSLLI QFLIENCCRI FGEEITSLLG EVSVRCDTRE BACU004578/1-1057 PTSSSPELEN EFTKKVSLLI QFLIENCCRI FGEEITSLLG EVSVRCDTRE 601 650 ENSP00000260283/1-1191 NASDISCFQL NDSSYDSLEN ELNEDVDAPC SDLVKKLGQG SRSMDSVLTL ENSBTAP00000039881/1-1123 NASDISCFQL NDSSYDSLEN ELNDDVDAPC RDLVKKLGQG SRSMDSVLTL ENSTTRP00000014615/1-1190 NASDISCFQL NDSSYDSLEN ELNEDVDAPC SDLVKKLGQG SRSMDSVLTL bmy_22271T0/1-1087 NASDISCFQL NDSSYDSLEN ELNEDVDAPC SDLVKKLGQG SRSMDSVLTL BACU004578/1-1057 NASDISCFQL NDSSYDSLEN ELNEDVDAPC SDLVKKLGQG SRSMDSVLTL 651 700 ENSP00000260283/1-1191 SDYDLDQPEV EGLLTLSDFD LAHSKDEDVQ MKRPLESKPV NILVYTKIPL ENSBTAP00000039881/1-1123 SDYDLDQPEV EGLLTLSDFD LGHSKDEDIQ MGQPLESKPV DTAVYTKVP- ENSTTRP00000014615/1-1190 SDYDLDQPEV EGLLTLSDFD LDHSKDEDIQ MEQPLESKPV NIAVYTKEPL bmy_22271T0/1-1087 SDYDLDQPEV EGLLTLSDFD LDHSKDEDIQ MEQPLESKPV NIAVYTKDPL BACU004578/1-1057 SDYDLDQPEV EGLLTLSDFD LDHSKDEDVQ MEQPLESKPV NIAVYTKDPL 701 750 ENSP00000260283/1-1191 RDHARAPSAM CTPSYLSTAA ANAAKSLRRH RRCSEPSIDY LDSKLSYLRE ENSBTAP00000039881/1-1123 --RAQAASGA STPSRLSTAA ADAPKGLRRH RRCSEPSIDY LDSKLSYLRE ENSTTRP00000014615/1-1190 QDHARGPSGM STPSHLSTTA ADAPKSLRRH RRCSEPSYDY LDSKLSYLRE bmy_22271T0/1-1087 QDHARAPSGM STPSHLSTTA ADAPKSLRRH RRCSEPSYDY LDSKLSYLRE BACU004578/1-1057 QDHTRAPSGM STPSHLSTTA ADAPKSLRRH RRCSEPSYDY LDSKLSYLRE 751 800 ENSP00000260283/1-1191 FYQKKLRKSS CDAILSQKDE DYLKQNQPLQ EEGKTCFKQS LVTGTDVSKK ENSBTAP00000039881/1-1123 LYQKKLRKSS CDAILSKKDE SHLNQNQPLQ EGGKTCFKKS LVTGIDS-KK ENSTTRP00000014615/1-1190 FYQKKLRKSS CDAVLSKKDE SHLNQNQPLQ EEGKTCFKKS LVIGTDI-KK bmy_22271T0/1-1087 FYQKKLRKSS CDAILSKKDE SHLNQNQPLQ EEGKTCFKKS LVIGTDI-KK BACU004578/1-1057 FYQKKLRKSS CDAILSKKDE SHLNQNQPLQ EEGKTCFKKS LVIGTDI-KK 801 850 ENSP00000260283/1-1191 NATTQNTKKK SLSGSEGNHV KLFPKSKPVA ISVASYSPMS SQDHSKNQPF ENSBTAP00000039881/1-1123 NAASKNVKKK SLSDNEGSHV KLFPKSKPVA ISVASYSHMS SCDHPRSQPF ENSTTRP00000014615/1-1190 NATNKNVKKK SLSDNEGNHV KLFPKSKPVA ISMASYSHMS SCDHPRNQTF bmy_22271T0/1-1087 NATNKNVKKK SLSDNEGNPV KLFPKSKPVA ISMASYSHMS SCDHPRNQTF BACU004578/1-1057 NATNKNVKKK SLSDNEGNHV KLFPKSKPVA ISMASYSHMS SCDHPRNQTF 851 900 ENSP00000260283/1-1191 DVNTSGYSPP HTADALKGPR THRRCSEPNI EDQNRKLTYL RGIYSKKQHK ENSBTAP00000039881/1-1123 DMDASEYSPP HTADTLKSSR RQRRCSEPSI DDQHCRLTYL RGIYPKKQQK ENSTTRP00000014615/1-1190 DTDTSGYSPP HTTDALKSSR RHRRCSEPNI DDQHCKLTYL RGIHSKKQHK bmy_22271T0/1-1087 DTDTSGYSPP HTTDALKSSR RHRRCSEPNI DDQHCKLTYL RGIHSKKQHK BACU004578/1-1057 DTDTSGYSPP HTTDALKSSR RHRRCSEPNI DDQHCKLTYL RGIHSKKQHK 901 950 ENSP00000260283/1-1191 TSCEAGLLHG EEDYLKRHKS LQMEGQKLIN QSLVMGIEVG KSSATNQNTE ENSBTAP00000039881/1-1123 ASYEASLLHG EEDYLKRHKS LQMEGQKLIN QSLVMGIEVG KSSATNQNVE ENSTTRP00000014615/1-1190 ASYEASLLHG EEDYLKRHKS LQMEGQKLIN QSLVMGIEVG KTSATNQNTE bmy_22271T0/1-1087 ASYEASLLHG EEDYLKRHKS LQMEGQKLIN QSLVMGIEVG KTSATNQNTD BACU004578/1-1057 ASYEASLLHG EEDYLKRHKS LQMEGQKLIN QSLVMGIEVG KTSATNQNTD 951 1000 ENSP00000260283/1-1191 KVLPPRLNLC PRTSYSSLSS PGTSPSGSSV SSQDSAFSQI SEHSVFTPTE ENSBTAP00000039881/1-1123 KVLPPSLNLC SRTSYSSLSS PGTSPSGSSV SSQDSAFSQI SEHSVFTPTE ENSTTRP00000014615/1-1190 KVLPPRLNIC SRTSYSSLSS PGTSPSGSSV SSQDSVFSQI SEHSVFTPTE bmy_22271T0/1-1087 KVLPPRLNIC SRTSYSSLSS PGTSPSGSSV SSQDSAFSQI SEHSVFTPTE BACU004578/1-1057 KVLPPRLNIC SRTSYSSLSS PGTSPSGSSV SSQDSAFSQI SEHSVFTPTE 1001 1050 ENSP00000260283/1-1191 TSSPIDCTFQ AQRKREDLSP DFSNASHVSG MPGPSSGQAC SRPAYTKKDT ENSBTAP00000039881/1-1123 TSSPIDCTF- -QRKQAELSS DFSSSGLISG IPGPSSGQAS GRLAYTKKDS ENSTTRP00000014615/1-1190 TSSPIDCTFQ AQRKQEELSS DFSSSSLISG IPGPSSGQAS GHLAYTKKDS bmy_22271T0/1-1087 TSSPIDCTFQ AQRKQEELSS DFSSSSLISG IPGPSSGQAS GRLAYTKKDS BACU004578/1-1057 TSSPIDCTFQ AQRKQEELSS DFSSSSLISG IPGPSSGQAS GRLAYTKKDS 1051 1100 ENSP00000260283/1-1191 MEWHSQMHSV TLHPSTWLRN GVASLKNWSL KKKAKAARPE EEKIASPKGP ENSBTAP00000039881/1-1123 VEWHSHMHSV TLHPSTWLKS GVASLKNWSL KKKARAPRPE ENKVGSLKGP ENSTTRP00000014615/1-1190 VEWHSQMHSV TLHPSTWLRN GVASLKNWSL KKKARAPRPE ENKIGSLKGH bmy_22271T0/1-1087 VEWHSQMHSV TLHPSTWLRN GVASLKNWSL KKKARAPRPE ENKIGSLKGH BACU004578/1-1057 VEWHSQMHSV TLHPSTWLRN GVASLKNWSL KKKARAPRPE ENKIGSVKGH 1101 1150 ENSP00000260283/1-1191 LEPPPHASGV PEANSLQEEQ KDLPLRAAEG LSPVQSAQRC SSSPFQDSER ENSBTAP00000039881/1-1123 TDPPAHASGV PEAITLQERQ KDVPQRAAEG LGAVQTARWY SSYPSQDSEK ENSTTRP00000014615/1-1190 TEPPPQASGV PEANALHERQ KDMPQGVAEG LGAVQTARWY SSYPSQDSEK bmy_22271T0/1-1087 TEPPPHASGV SEANALHERQ KDMPRRAAEG LGAVQTARWY SSYPSQDSEK BACU004578/1-1057 TEPPPHASGV SEANALDERQ KDMPRRAAEG LGAVQTARWY SSYPSQDSEK 1151 1200 ENSP00000260283/1-1191 HCSSPFSLVE SRLKLCMKSH EEIEPGSQSS SGSLPWERAS ASSWTLEDAT ENSBTAP00000039881/1-1123 YCSSLFSLVE DRLGLHMKSP EEGKDSGQCS PGMLPQRRSS PGSLTVDDAS ENSTTRP00000014615/1-1190 HCSSPVSLVE DRLGLCMKSP EEGEISGRCS PGTLPHGRSS PSSLTVDHVC bmy_22271T0/1-1087 HCSSPVSLVE DRLGLCMKSP EEGEISGQCS PGALPHGRSS PSSLTVGHVC BACU004578/1-1057 HCSSPVSLVE DRLGLCMKSS EEGEISGQCS PGTLPHGRSS PSSLTVGHVC 1201 1250 ENSP00000260283/1-1191 SPDSGPTVVC DIEDRYLTKD I ENSBTAP00000039881/1-1123 SPDSGPPVVC DAEDRHLAKD M ENSTTRP00000014615/1-1190 SPDSGPTVVC DVEDRHLTKD I bmy_22271T0/1-1087 SPDSGPTVFC DVEDRHLTKD I BACU004578/1-1057 SPDSGPTVVC DVEDRHLTKD I