KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:49:55 2014 Check: 00 .. Name: BACU005302/1-676 Len: 837 Check: 532 Weight: 1.00 Name: bmy_12886T0/1-632 Len: 837 Check: 6593 Weight: 1.00 Name: ENSTTRP00000000862/1-836 Len: 837 Check: 5542 Weight: 1.00 Name: ENSBTAP00000039924/1-632 Len: 837 Check: 6716 Weight: 1.00 // 1 50 BACU005302/1-676 MSRPQGLLWL PLVFTPVCVM VNSNVLLWIT ALAIKFTLID SQAQYPVVNT bmy_12886T0/1-632 ---------- ---------- --------MK VFALELEMGD QMKR------ ENSTTRP00000000862/1-836 MSRPQGLLWL PLVFTPVCVM VNSNVLLWIT ALAIKFTLID SQAQYPVVNT ENSBTAP00000039924/1-632 ---------- ---------- ---------- ---------- ---------- 51 100 BACU005302/1-676 NYGKIRGLRT PLPNEILGPV EQYLGVPYAS PPTGERRFQP PEPPSSWTGI bmy_12886T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000862/1-836 NYGKIRGLRT PLPNEILGPV EQYLGVPYAS PPTGERRFQP PEPPSSWTGV ENSBTAP00000039924/1-632 ---------- ---------- ---------- ---------- ---------- 101 150 BACU005302/1-676 RNATQFAAVC PQHLDERSLL HDMLPIWFTA NLDTLMTYVQ DQNEDCLYLN bmy_12886T0/1-632 -------SRC NKHFK----- ---------- ---------- ---------- ENSTTRP00000000862/1-836 RNATQFAAVC PQHLNERSLL HDMLPIWFTA NLDTLMTYVQ DQNEDCLYLN ENSBTAP00000039924/1-632 ---------- ---------- ---------- ---------- ---------- 151 200 BACU005302/1-676 IYVPTED--- ---------- -------DIH DQNTKKPVMV YIHGGSYMEG bmy_12886T0/1-632 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000862/1-836 IYVPTEDGAN TKKNADDITS NDRGEDEDIH DQNSKKPVMV YIHGGSYMEG ENSBTAP00000039924/1-632 ---------- ---------- ---------- ---------- ---------- 201 250 BACU005302/1-676 TGNMIDGSIL ASYGNVIVIT INYRLGILGF LSTGDQAAKG NYGLLDQIQA bmy_12886T0/1-632 ---------- ---------- --------GF LSTGDQAAKG NYGLLDQIQA ENSTTRP00000000862/1-836 TGNMIDGSIL ASYGNVIVIT VNYRLGILGF LSTGDQAAKG NYGLLDQIQA ENSBTAP00000039924/1-632 ---MIDGSIL ASYGNVIVIT INYRLGILGF LSTGDQAAKG NYGLLDQIQA 251 300 BACU005302/1-676 LRWIEENVGA FGGDAKRVTI FGSGAGASCV SLLTLSHYSE GLFQKAIIQS bmy_12886T0/1-632 LRWIEENVGA FGGDAKRVTI FGSGAGASCV SLLTLSHYSE GLFQKAIIQS ENSTTRP00000000862/1-836 LRWIEENVGT FGGDPKRVTI FGSGAGASCV SLLTLSHYSE GLFQKAIIQS ENSBTAP00000039924/1-632 LRWIEENVGA FGGDPKRVTI FGSGAGASCV SLLTLSHYSE GLFQKAIIQS 301 350 BACU005302/1-676 GTALSSWAVN YQPAKYTRIL ADKVGCNMLD TTDMVECLRN KNYKELIQQT bmy_12886T0/1-632 GTALSSWAVN YQPAKYTRIL ADKVGCNMLD TTDMVECLRN KNYKELIQQT ENSTTRP00000000862/1-836 GTALSSWAVN YQPAKYTRIL ADKVGCNMLD TTDMVECLRN KNYKELIQQT ENSBTAP00000039924/1-632 GTALSSWAVN YQPAKYTRIL ADKVGCNMLD TTDMVECLRN KNYRELIQQT 351 400 BACU005302/1-676 ITPATYHISF GPVIDGDVIP DDPQILMEQG EFLNYDIMLG VNQGEGLKFV bmy_12886T0/1-632 ITPATYHISF GPVIDGDVIP DDPQILMEQG EFLNYDIMLG VNQGEGLKFV ENSTTRP00000000862/1-836 ITPATYHISF GPVIDGDVIP DDPQILMEQG EFLNYDIMLG VNQGEGLKFV ENSBTAP00000039924/1-632 ITPATYHISF GPVIDGDVIP DDPQILMEQG EFLNYDIMLG VNQGEGLKFV 401 450 BACU005302/1-676 DGIVDNEDGV TPNDFDFSVS NFVDNLYGYP EGKDTLRETI KFMYTDWADK bmy_12886T0/1-632 DGIVDNEDGV TPNDFDFSVS NFVDNLYGYP EGKDTLRETI KFMYTDWADK ENSTTRP00000000862/1-836 DGVVDNEDGV TPNDFDFLVS NFVDNLYGYP EGKDTLRETI KFMYTDWADK ENSBTAP00000039924/1-632 DGIVDHEDGV TPNDFDFSVS NFVDNLYGYP EGKDTLRETI KFMYTDWADK 451 500 BACU005302/1-676 ENPETRRKTL VALFTDHQWV APAVATADLH AQYGSPTYFY AFYHHCQSEM bmy_12886T0/1-632 ENPETRRKTL VALFTDHQWV APAVATADLH AQYGSPTYFY AFYHHCQSEM ENSTTRP00000000862/1-836 ENPETRRKTL VALFTDHQWV APAVATADLH AQYGSPTYFY AFYHHCQSEM ENSBTAP00000039924/1-632 ENPETRRKTL VALFTDHQWV APAVATADLH AQYGSPTYFY AFYHHCQSEM 501 550 BACU005302/1-676 KPSWADSAHG DEVPYVFGTP MIGPTELFSC NFSKNDVMLS AVVMTYWTNF bmy_12886T0/1-632 KPSWADSAHG DEVPYVFGTP MIGPTELFSC NFSKNDVMLS AVVMTYWTNF ENSTTRP00000000862/1-836 KPSWADSAHG DEVPYVFGIP MIGPTELFSC NFSKNDVMLS AVVMTYWTNF ENSBTAP00000039924/1-632 KPSWADSAHG DEVPYVFGIP MIGPTELFSC NFSKNDVMLS AVVMTYWTNF 551 600 BACU005302/1-676 AKTGDPNQPV PQDTKFIHTK SNHFEEVAWS KYNPKDQLYL HIGLKPRVRD bmy_12886T0/1-632 AKTGDPNQPV PQDTKFIHTK PNRFEEVAWS KYNPKDQLYL HIGLKPRVRD ENSTTRP00000000862/1-836 AKTGDPNQPV PQDTKFIHTK PNRFEEVAWS KYNPKDQLYL HIGLKPRVRD ENSBTAP00000039924/1-632 AKTGDPNQPV PQDTKFIHTK PNRFEEVAWS KYNPKDQLYL HIGLKPRVRD 601 650 BACU005302/1-676 HYRATKVAFW LELVPHLHNL NEIFQYVSTT TKVPPPXXXX XXXXXXXXXX bmy_12886T0/1-632 HYRATKVAFW LELVPHLHNL NEIFQYVSTT TKVPPPDMTS FPYGTRRSPA ENSTTRP00000000862/1-836 HYRATKVAFW LELVPHLHNL NEIFQYVSTT TKVPPPDMTS FPYGTRRSPA ENSBTAP00000039924/1-632 HYRATKVAFW LELVPHLHNL NEIFQYVSTT TKVPPPDMTS FPYGTRRSPS 651 700 BACU005302/1-676 XXXXXX---- ------RPNA QRSLPPTTPN TPRTLI---- ---------- bmy_12886T0/1-632 KIWPTTKRPA ITPAN-NPKH SKDPHKTGPE DTTVLIETKR DYSTELSVTI ENSTTRP00000000862/1-836 KIWPTTKRPA ITPAN-NPKH SKDPHKTGPE DTTVLIETKR DYSTELSVTI ENSBTAP00000039924/1-632 KIWPTTKRPA ITPANSNPKH SKDPHKTGPE DTTVLIETKR DYSTELSVTI 701 750 BACU005302/1-676 ---------- ---------K RGPRTPPSSS KPN------- ---------- bmy_12886T0/1-632 AVGASLLFLN ILAFAALYYK KDKRRHETHR RPSPQRNTTN DIAHIQNEEI ENSTTRP00000000862/1-836 AVGASLLFLN ILAFAALYYK KDKRRHETHR RPSPQRNTTN DIAHIQNEEI ENSBTAP00000039924/1-632 AVGASLLFLN ILAFAALYYK KDKRRHETHR RPSPQRNAAN DIAHIQNEEI 751 800 BACU005302/1-676 ---------- ---------- ---------- ---------- ---------- bmy_12886T0/1-632 MSLQMKQLEH DHECESLQAH DTLRLTCPPD YTLTLRRSPD DIPLMTPNTI ENSTTRP00000000862/1-836 MSLQMKQLEH DHECESLQAH DTLRLTCPPD YTLTLRRSPD DIPLMTPNTI ENSBTAP00000039924/1-632 MSLQMKQL-- DHECESLQAH DTLRLTCPPD YTLTLRRSPD DIPLMTPNTI 801 850 BACU005302/1-676 --------GI IPLS------ ---------- ------- bmy_12886T0/1-632 TMIPNTLTGM QPLHTFNTFS GGQNSTNLPH GHSTTRV ENSTTRP00000000862/1-836 TMIPNTLTGM QPLHTFNTFS GGQNSTNLPH GHSTTRV ENSBTAP00000039924/1-632 TMIPNTLTGM QPLHTFNTFS GGQNSTNIPH GHSTTRV