KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:49:56 2014 Check: 00 .. Name: ENSP00000261937/1-1363 Len: 1440 Check: 3734 Weight: 1.00 Name: ENSBTAP00000039997/1-1354 Len: 1440 Check: 8814 Weight: 1.00 Name: ENSTTRP00000005698/1-1363 Len: 1440 Check: 6329 Weight: 1.00 Name: bmy_20404T0/1-1354 Len: 1440 Check: 9019 Weight: 1.00 Name: BACU002899/1-1437 Len: 1440 Check: 8484 Weight: 1.00 // 1 50 ENSP00000261937/1-1363 MQRGAALCLR LWLCLGLLD- ---------- ---------- ---------- ENSBTAP00000039997/1-1354 ---------- -MVTASGADQ DQ-------- ---------- ---------- ENSTTRP00000005698/1-1363 MQRGAALCLR LWLCLGLLD- ---------- ---------- ---------- bmy_20404T0/1-1354 ---------- -MLTLSPTP- ---------- ---------- ---------- BACU002899/1-1437 MQRRAALCLR LWLCLGLLDS ERACLQSAAM GLALASSVLQ GTAAKESVDQ 51 100 ENSP00000261937/1-1363 ---------- ---------- ---------- ---------- --GLVSGYSM ENSBTAP00000039997/1-1354 ---------- ---------- ---------- ---------- --GLAGGYSM ENSTTRP00000005698/1-1363 ---------- ---------- ---------- ---------- --SLASGYSM bmy_20404T0/1-1354 ---------- ---------- ---------- ---------- --GLASGYSM BACU002899/1-1437 TSRTAVQPLS PTRILVCCFH SQRLWLTPGS HCPRLLTAQR RGGLASGYSM 101 150 ENSP00000261937/1-1363 TPPTLNITEE SHVIDTGDSL SISCRGQHPL EWAWPGAQEA PATGDKDSED ENSBTAP00000039997/1-1354 TPPTLNITEE TYVIDSSDSL SISCRGQHPL EWAWPGAQDA PVPEEKDGED ENSTTRP00000005698/1-1363 TPPTLNITEE THVIDSSDSL SISCRGQHPL EWAWPGAQDA PVTGEKDGED bmy_20404T0/1-1354 TPPTLNITEE THIIDSSDSL SISCRGQHPL EWAWPGAQDA PVTGEKDGED BACU002899/1-1437 TPPTLNITEE THVIDSSDSL SISCRGQHPL EWAWPGAQDA PVTGEKDGED 151 200 ENSP00000261937/1-1363 TGVVRDCEGT DARPYCKVLL LHEVHANDTG SYVCYYKYIK ARIEGTTAAS ENSBTAP00000039997/1-1354 TGTVRDCEGT DTRPYCKVLQ LQEAHANNTG SYRCYYKYIK ARIEGTTAAS ENSTTRP00000005698/1-1363 MGIVRDCEGT DARPYCKVLL LQQAHANDTG SYRCYYKYIK ARIEGTTAAS bmy_20404T0/1-1354 MGIVRDCEGT DARPYCKVLL LQEAHANDTG SYRCYYKYIK ARIEGTTAAS BACU002899/1-1437 MGIVRDCEGT DARPYCKVLL LQEAHANDTG SYRCYYKYIK ARIEGTTAAS 201 250 ENSP00000261937/1-1363 SYVFVRDFEQ PFINKPDTLL VNRKDAMWVP CLVSIPGLNV TLRSQSSVLW ENSBTAP00000039997/1-1354 TYVFVRDWEQ PFINKPDTLL VNRKDSTWVP CLVSIPGLNV TLRSQSSALQ ENSTTRP00000005698/1-1363 TYVFVRDLEQ PFINKPDTLL VNRKDSMWVP CLVSIPGLNV TLRSQSSALW bmy_20404T0/1-1354 TYVFVRDLEQ PFINKPDTLL VNRKDSMWVP CLVSIPGLNV TLRSQSSALW BACU002899/1-1437 TYVFVRDLEQ PFINKPDTLL VNRKDSMWVP CLVSIPGLNV TLRSQSSALW 251 300 ENSP00000261937/1-1363 PDGQEVVWDD RRGMLVSTPL LHDALYLQCE TTWGDQDFLS NPFLVHITGN ENSBTAP00000039997/1-1354 PDGQEVVWDD RRGMRVPTPL LRDALYLQCE TTWGGQAFLS NPFVVHITGN ENSTTRP00000005698/1-1363 PDGQEVVWDD RRGMRVPTPL LRDALYLQCE TTWGGQAFLS NPFLVHITGN bmy_20404T0/1-1354 PDGQEVVWDD RRGMRVPTPL LRDALYLQCE TTWGGQAFLS NPFLVHITGN BACU002899/1-1437 PDGQEVVWDD RRGMRVPTPL LRDALYLQCE TTWGGQAFLS NPFLVHITGN 301 350 ENSP00000261937/1-1363 ELYDIQLLPR KSLELLVGEK LVLNCTVWAE FNSGVTFDWD YPGKQAERGK ENSBTAP00000039997/1-1354 ELYDIQLFPK RSLELLVGEK LVLNCTVWAE FNSGVTFDWN YPGKQAERGK ENSTTRP00000005698/1-1363 ELYDIQLFPK KSLELLVGEK LVLNCTVWAE FNSGVTFDWD YPGKQAERGK bmy_20404T0/1-1354 ELYDIQLFPK KSLELLVGEK LVLNCTVWAE FNSGVTFDWD YPGKQAERGK BACU002899/1-1437 ELYDIQLFPK KSLELLVGEK LVLNCTVWAE FNSGVTFDWD YPGKQAERGK 351 400 ENSP00000261937/1-1363 WVPERRSQQT HTELSSILTI HNVSQHDLGS YVCKANNGIQ RFRESTEVIV ENSBTAP00000039997/1-1354 WVPERRSQQT HTELSSILTI HNVSQRDLGP YVCQANNGIQ QFQESTEVIV ENSTTRP00000005698/1-1363 WVPERRSQQT HTELSSILTI HNVSQHDLGP YVCLANNGIQ QFQESTEVIV bmy_20404T0/1-1354 WVPERRSQQT HTELSSILTI HNVSQHDLGP YVCLANNGIQ QFQESTEVIV BACU002899/1-1437 WVPERRSQQT HTELSSILTI HNVSQHDLGP YVCLANNGIQ QFQESTEVIV 401 450 ENSP00000261937/1-1363 HENPFISVEW LKGPILEATA GDELVKLPVK LAAYPPPEFQ WYKDGKALSG ENSBTAP00000039997/1-1354 HEKPFISVEW LKGPVLEATA GDELVKLPVK LAAYPPPEFQ WYKDRKAVSG ENSTTRP00000005698/1-1363 HEKPFISVEW LKGPILEATA GDELVKLPVK LAAYPPPEFQ WYKDRKAVSG bmy_20404T0/1-1354 HEKPFISVEW LKGPVLEATA GDELVKLPVK LAAYPPPEFQ WYKDRKAVSG BACU002899/1-1437 HEKPFISVDW LKGPVLEATA GDELVKLPVK LAAYPPPEFQ WYKDRKAVSG 451 500 ENSP00000261937/1-1363 RHSPHALVLK EVTEASTGTY TLALWNSAAG LRRNISLELV VNVPPQIHEK ENSBTAP00000039997/1-1354 RHSPHVLVLK EVTEASAGIY TLALWNTAAG LRRNISLELV VNVPPHIRHR ENSTTRP00000005698/1-1363 RHSPHVLVLK EVTEASAGIY TLALWNSAAG LRRNISLELV VNVPPHIHEK bmy_20404T0/1-1354 RHSPHVLVLK EVTEASAGIY TLALWNSAAG LRRNISLELV VNVPPHIHEK BACU002899/1-1437 RHSPHVLVLK EVTEASAGIY TLALWNSAAG LRRNISLELV VNVPPHIHEK 501 550 ENSP00000261937/1-1363 EASSPSIYSR HSRQALTCTA YGVPLPLSIQ WHWRPWTPCK MFAQRSL-RR ENSBTAP00000039997/1-1354 NGAAPTILSL RSPKVLGCTA VPGTDP-GLL GKAGPGSPCR TFPTMSS-RR ENSTTRP00000005698/1-1363 EASSPSIYSR HSRQALTCTA YGVPPPLSIQ WHWRPWTPCK TFTQRSL-QR bmy_20404T0/1-1354 EASSPSIYSR HSRQALTCTA YGVPPPLSIQ WHWRPWTPCK TFTQRSLSQR BACU002899/1-1437 EASSPSIYSR HSRQALTCTA YGVPPPLSIQ WHWRPWTPCK TFTQRSLSQR 551 600 ENSP00000261937/1-1363 RQQQDLMPQC RDWRAVTTQD AVNPIESLDT WTEFVEGKNK TVSKLVIQNA ENSBTAP00000039997/1-1354 RQQRDRMPQC QDWREVTTQD AVNPIESLDT WTEFVEGKNK TVSKLVIQEA ENSTTRP00000005698/1-1363 RQQRDXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TVSKLVIQDA bmy_20404T0/1-1354 RQQRDQMPQC QDWREVTMQD AVNPIESLDT WTEFVEGKNK TVSKLVIQDA BACU002899/1-1437 RQQRDQMPQC QDWREVTMQD AVNPIESLDT WTEFVEGKNK TVSKLVIQDA 601 650 ENSP00000261937/1-1363 NVSAMYKCVV SNKVGQDERL IYFYVTTIPD GFTIESKPSE ELLEGQPVLL ENSBTAP00000039997/1-1354 NVSAMYKCVV FNKVGQDERL IYFYVATIPD GFSIESEPSE EPLEGQTVRL ENSTTRP00000005698/1-1363 NVSAMYKCVV FNKVGQDERL IYFYVTTIPD GFSIESEPSE DPLEGQAVRL bmy_20404T0/1-1354 NVSAMYKCVV FNKVGQDERL IYFYVTTIPD GFSIESEPSE DPLEGQAVHL BACU002899/1-1437 NVSAMYKCVV FNKVGQDERL IYFYVTTIPD GFSIESEPSE DPLEGQAVHL 651 700 ENSP00000261937/1-1363 SCQADSYKYE HLRWYRLNLS TLHDAHGNPL LLDCKNVHLF ATPLAASLEE ENSBTAP00000039997/1-1354 SCRADNYTYE HLHWYRLNLS TLHDAQGNPL LLDCKNVHLF ATPLAASLEE ENSTTRP00000005698/1-1363 SCRADNYTYQ HLRWYRLNLS TLHDAHGNPL LLDCKNVHLF ATPLAASLEE bmy_20404T0/1-1354 SCRADNYTYQ HLRWYRLNLS TLHDAHGNPL LLDCKNVHLF ATPLAASLEE BACU002899/1-1437 SCRADNYTYQ HLRWYRLNLS TLHDAHGNPL LLDCKNVHLF ATPLAASLEE 701 750 ENSP00000261937/1-1363 VAPGARHATL SLSIPRVAPE HEGHYVCEVQ DRRSHDKHCH KKYLSVQALE ENSBTAP00000039997/1-1354 VASGEPHATL TLTIPSVAPE DEGDYVCEVQ DRRTHDKHCH KKYLSVQALE ENSTTRP00000005698/1-1363 AAPGVRHATL SLTIPSVAPE HEGDYVCEVQ DRRSHDKHCH KKYLSVQALE bmy_20404T0/1-1354 AAPGVRHATL SLTIPSVAPE HEGDYVCEVQ DRRSHDKHCH KKYLSVQALE BACU002899/1-1437 AAPGVRHATL SLTIPSVAPE HEGDYVCEVQ DRRSHDKHCH KKYLSVQALE 751 800 ENSP00000261937/1-1363 APRLTQNLTD LLVNVSDSLE MQCLVAGAHA PSIVWYKDER LLEEKSGVDL ENSBTAP00000039997/1-1354 APRLTQNLSD LLVNVSDSLE MRCPVAGTHV PSIVWYKDER LLEEESGIDL ENSTTRP00000005698/1-1363 VPRLTQNLTD LLVNVSDSLE MRCPVAGAHM PSIVWYKDER LLEEESGIDL bmy_20404T0/1-1354 VPRLTQNLTD LLVNVSDSLE MRCPVAGAHM PSIVWYKDER PLEEESGIDL BACU002899/1-1437 VPRLTQNLTD LLVNVSDSLE MRCPVAGAHM PSIVWYKDER PLEEESGIDL 801 850 ENSP00000261937/1-1363 ADSNQKLSIQ RVREEDAGRY LCSVCNAKGC VNSSASVAVE GSEDKGSMEI ENSBTAP00000039997/1-1354 ADSNQRLSIQ RVREEDAGHY LCSVCNAKGC VNSSASVAVS GSEDKGSMEI ENSTTRP00000005698/1-1363 ADSNQRLSIQ RVREEDAGRY LCSVCNAKGC VNSSASVAVE GSEDKGNMEI bmy_20404T0/1-1354 ADSNQRLSIQ RVREEDAGRY LCSVCNAKGC VNSSASVAVE GSEDKGNMEI BACU002899/1-1437 ADSNQRLSIQ RVREEDAGRY LCSVCNAKGC VNSSASVAVE GSEDKGNMEI 851 900 ENSP00000261937/1-1363 VILVGTGVIA VFFWVLLLLI FCNMRRPAHA DIKTGYLSII MDPGEVPLEE ENSBTAP00000039997/1-1354 VILVGTGVIA VFFWVLLLLI FCNMRRPTHA DIKTGYLSII MDPGEVPLEE ENSTTRP00000005698/1-1363 VILIGTGVIA VFFWVLLLLI FCNMRRPTHA DIKTGYLSII MDPGEVPLEE bmy_20404T0/1-1354 VILIGTGVIA VFFWVLLLLI FCNMRRPTHA DIKTGYLSII MDPGEVPLEE BACU002899/1-1437 VILIGTGVIA VFFWVLLLLI FCNMRRPTHA DIKTGYLSII MDPGEVPLEE 901 950 ENSP00000261937/1-1363 QCEYLSYDAS QWEFPRERLH LGRVLGYGAF GKVVEASAFG IHKGSSCDTV ENSBTAP00000039997/1-1354 QCEYLSYDAS QWEFPRERLH LGRVLGHGAF GKVVEASAFG INKGSSCDTV ENSTTRP00000005698/1-1363 QCEYLSYDAS QWEFPRERLH LGRVLGHGAF GKVVEASAFG INKGSSCDTV bmy_20404T0/1-1354 QCEYLSYDAS QWEFPRERLH LGRVLGHGAF GKVVEASAFG INKGSSCDTV BACU002899/1-1437 QCEYLSYDAS QWEFPRERLH LGRVLGHGAF GKVVEASAFG INKGSSCDTV 951 1000 ENSP00000261937/1-1363 AVKMLKEGAT ASEHRALMSE LKILIHIGNH LNVVNLLGAC TKPQGPLMVI ENSBTAP00000039997/1-1354 AVKMLKEGAT ASEHRALMSE LKILIHIGNH LNVVNLLGAC TKPNGPLMVI ENSTTRP00000005698/1-1363 AVKMLKEGAT ASEHRALMSE LKILIHIGNH LNVVNLLGAC TKPNGPLMVI bmy_20404T0/1-1354 AVKMLKEGAT ASEHRALMSE LKILIHIGNH LNVVNLLGAC TKPNGPLMVI BACU002899/1-1437 AVKMLKEGAT ASEHRALMSE LKILIHIGNH LNVVNLLGAC TKPNGPLMVI 1001 1050 ENSP00000261937/1-1363 VEFCKYGNLS NFLRAKRDAF SPCAEKSPEQ RGRFRAMVEL ARLDRRRPGS ENSBTAP00000039997/1-1354 VEFCKYGNLS NFLRTKREAF NPCAEKSAEQ RRRFCSMVED AKADQRRPGN ENSTTRP00000005698/1-1363 VEFCKYGNLS NFLRAKREAF NPYAEKSLEQ RRRFCSMVEG AKADRRRPGS bmy_20404T0/1-1354 VEFCKYGNLS NFLRTKREAF NPYAEKSPEQ QRRFCSMVEG AKADRRRPGS BACU002899/1-1437 VEFCKYGNLS NFLRTKRETF NPYAEKSPEQ RRRFCSMVEG AKADRRRPGS 1051 1100 ENSP00000261937/1-1363 SDRVLFARFS KTEGGARRAS PDQEAEDLWL SPLTMEDLVC YSFQVARGME ENSBTAP00000039997/1-1354 CDMALLTRLL TGKGGAGRAA PVQEAKDLWL SPLTMEDLVC YSFQVARGME ENSTTRP00000005698/1-1363 SDRALLTRLL MGKGGAGRAP PVQEAEDLWL SPLTMEDLVC YSFQVARGME bmy_20404T0/1-1354 SDRALLTRLL MGKGGAGRAP PVQEAEDLWL SPLTMEDLVC YSFQVARGME BACU002899/1-1437 SDRALLTRLL MGKGGAGRAP PVQEAEDLWL SPLTMEDLVC YSFQVARGME 1101 1150 ENSP00000261937/1-1363 FLASRKCIHR DLAARNILLS ESDVVKICDF GLARDIYKDP DYVRKGSARL ENSBTAP00000039997/1-1354 FLASRKCIHR DLAARNILLS ESDVVKICDF GLARDIYKDP DYVRKGSARL ENSTTRP00000005698/1-1363 FLASRKCIHR DLAARNILLS ESDVVKICDF GLARDIYKDP DYVRKGSARL bmy_20404T0/1-1354 FLASRKCIHR DLAARNILLS ESDVVKICDF GLARDIYKDP DYVRKGSARL BACU002899/1-1437 FLASRKCIHR DLAARNILLS ESDVVKICDF GLARDIYKDP DYVRKGSARL 1151 1200 ENSP00000261937/1-1363 PLKWMAPESI FDKVYTTQSD VWSFGVLLWE IFSLGASPYP GVQINEEFCQ ENSBTAP00000039997/1-1354 PLKWMAPESI FDKVYTTQSD VWSFGVLLWE IFSLGASPYP GVQINEEFCQ ENSTTRP00000005698/1-1363 PLKWMAPESI FDKVYTTQSD VWSFGVLLWE IFSLGASPYP GVQINEEFCQ bmy_20404T0/1-1354 PLKWMAPESI FDKVYTTQSD VWSFGVLLWE IFSLGASPYP GVQINEEFCQ BACU002899/1-1437 PLKWMAPESI FDKVYTTQSD VWSFGVLLWE IFSLGASPYP GVQINEEFCQ 1201 1250 ENSP00000261937/1-1363 RLRDGTRMRA PELATPAIRR IMLNCWSGDP KARPAFSELV EILGDLLQGR ENSBTAP00000039997/1-1354 RLKEGTRMRA PELATPAIRR IMLSCWAGDP KERPAFSDLV EILGNLLQGR ENSTTRP00000005698/1-1363 RLKEGTRMRA PELATPAIRR IMLSCWAGDP KERPAFSDLV EILGDLLQGR bmy_20404T0/1-1354 RLKEGTRMRA PELATPAICR IMLSCWAGDP KERPAFSDLV EILGDLLQGR BACU002899/1-1437 RLKEGTRMRA PELATPAIRR IMLSCWAGDP KERPAFSDLV EILGDLLQGR 1251 1300 ENSP00000261937/1-1363 GLQEEEEVCM APRSSQSSEE GSFSQVSTMA LHIAQADA-- EDSPPSLQRH ENSBTAP00000039997/1-1354 AQQEEEDDCV APCGSQSSEE GSFLQASTTV MHITETDADT EDSPLSLHQH ENSTTRP00000005698/1-1363 GHQEEED-CV VSCGSQSSEE GSFLQASTTA LHVMETDADM EDSPPSLHRH bmy_20404T0/1-1354 GHQEEED-CV VSCGSQSSEE GSFLQASTTA LHVMETDADM EDSPPNLHRH BACU002899/1-1437 GHQEEED-CV VSCGSQSSEE GSFLQTSTTA LHVMETDADM EDSPPSLHRH 1301 1350 ENSP00000261937/1-1363 SLAARYYNWV SFPGCLARGA ETRGSSRMKT FEEFPMTPTT YKGSVDNQTD ENSBTAP00000039997/1-1354 SLAARYYNCV SFPGCLARGT QTQGSSRMKT FEEFPMTPTT YKAIVDSQTD ENSTTRP00000005698/1-1363 SLAARYYNCV SFPGCLARGT QTQGPFRMKT FEEFPMTLTT YKASVDSQTD bmy_20404T0/1-1354 SLAARYYNCV SFPGCLARGT QTQGPFRMKT FEEFPMTLTT YKASVDSQTD BACU002899/1-1437 SLAARYYNCV SFPGCLARGT QTQGPFRMKT FEEFPMTLTT YKASVDSQTD 1351 1400 ENSP00000261937/1-1363 SGMVLASEEF EQIESRHRQE SGFS-CKGPG QNVAVTRAHP DSQGRRRRPE ENSBTAP00000039997/1-1354 SGMVLASEEF EQLESRHREE SRLS-CKGPG RNVSMTTAHL DPQGRR-WPD ENSTTRP00000005698/1-1363 SGMVLASEEF ERLESRHRQE SGLS-CKGPG RNMDVTMAHA DPPGRRQRPD bmy_20404T0/1-1354 SGMVLASEEF ERLESRHRQE SGLSSCKGPG RNMDMTMAHP DPPGRRQRPD BACU002899/1-1437 SGMVLASEEF ERLESRHRQE SGLS-CKGPG RNMDVTMAHP DPPGRRQRPD 1401 1450 ENSP00000261937/1-1363 RGARGGQVFY NSEYGELSEP SEEDHCSPSA RVTFFTDNSY ENSBTAP00000039997/1-1354 PGPR-GQVFY NSEYGELAGP PEESASTLAA RSPFFTDSSY ENSTTRP00000005698/1-1363 PGAQ-GQVFY NSEYGELAGP PEESDGIPSA QVPFFTDSSY bmy_20404T0/1-1354 PGAQ-GQVFY NSEYGELAGR PEESDGIPSA QVPFFTDSSY BACU002899/1-1437 PGAQ-GQVFY NSEYGELAGR PEESDGIPSA QVPFFTDSSY