KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:04 2014 Check: 00 .. Name: ENSBTAP00000040068/1-1633 Len: 1811 Check: 3197 Weight: 1.00 Name: BACU002817/1-1611 Len: 1811 Check: 5156 Weight: 1.00 Name: bmy_09090T0/1-1407 Len: 1811 Check: 7821 Weight: 1.00 Name: ENSTTRP00000013674/1-1277 Len: 1811 Check: 4032 Weight: 1.00 // 1 50 ENSBTAP00000040068/1-1633 ---------- ---------- ---------- --------MV SEQLSQDLLR BACU002817/1-1611 MARCGEDSVA PVVLLESPGV CNKGLQRKGP SERRRLKAMV SERLSQDLLR bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000040068/1-1633 LLREEVHTDV TFSIGCTLFK AHKAVLLARV PDFYFHTVGH TDNLKNHEHV BACU002817/1-1611 LLREEVHTDV TFSIGCTLFK AHKAVLLARV PDFYFHTVGH TNNLTNHEPV bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000040068/1-1633 TVENFEASEF RTFLQIVYSS NRNIKSYEEE ILRLHNGPIL NSYTNKNFQT BACU002817/1-1611 AVENFEASEF RIFLQIVYSS NRNIKNYEEE ILRKKIVESG VPQKKCDFSV bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 151 200 ENSBTAP00000040068/1-1633 DRAIIYNVFT SQSLNYESFE V--------- ---------- -------EDI BACU002817/1-1611 GKCTDNDGRS SVGKRSSDHS FLKHEIPEDN KKEDIPEDNN KEYNLISSDI bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 201 250 ENSBTAP00000040068/1-1633 YDLEPASELG EDLLKLYVKH CCPDIDIYVD GKSFKAHRAI LSARSSYFAA BACU002817/1-1611 YDLEPASELG EDLLKLYEKQ CCPDIDIYVD GKSFKAHRAI LSARSSYFAA bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000040068/1-1633 MLSGCWAESS QECVTLQSIS HVEMNVMMHF IYGGTLDFPV KANVGQILNM BACU002817/1-1611 MLSGCWAESS QEYITLQG-- ---------- ---------- ---------- bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 301 350 ENSBTAP00000040068/1-1633 ADMYGLEGLK EVAIYILRRD YCNFFQKPVS RRLASILECL IIAHSVGVES BACU002817/1-1611 ---------- ---------- ---------- ---------- ---------- bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000040068/1-1633 LFADCMKTIE KKYYSRCLGS TFLADPCPEI QKSCFNMLIH SLNDKNAAFL BACU002817/1-1611 ---------- ---------- ---------- ---------- ---------- bmy_09090T0/1-1407 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000040068/1-1633 LMESDRLIVS LPRVKWTESA LI-MASQLQE ECIAFIIENF SKIIQSENFA BACU002817/1-1611 ------WIVK HFARFWSERS FANVPPEIQK SCLNMLIQS- ---------- bmy_09090T0/1-1407 -MESDRLIIS LPRVKWTEAA LT-MASQLQE XCIAFIIENF SMIIQSENFA ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 451 500 ENSBTAP00000040068/1-1633 LLLQSQAMSS TSDLLDKIFK AVEENITTEN SCSLLMALDT LLNSDSTKEM BACU002817/1-1611 ---------- ---------- ---------- ---------- ---------L bmy_09090T0/1-1407 LLLKSQAMSS TSDLLDKILK AIEENITTEN SCSLLMALDT LLNSDSTKEM ENSTTRP00000013674/1-1277 ---------- ---------- ---------- ---------- ---------- 501 550 ENSBTAP00000040068/1-1633 GFTCKIQALR DKLWIFLVQS FYAVRHTESW KLMSTDDQQK IQAAAFDKGD BACU002817/1-1611 GFTCKIQALR DKLWIFLVQS FYAVRHTESW KLMSTDDQQK IQAAAFDKGD bmy_09090T0/1-1407 GFTCKIQALR DKLWIFLVQS FYAVRHTESW KLMSTDDQQK IQAAAFDKGD ENSTTRP00000013674/1-1277 ---------- ---------- ---------- --MSTDDQQK IQAAAFDKGD 551 600 ENSBTAP00000040068/1-1633 DRRLGKKPIF SSSQQRKQVS DCGAIKNKSA GGSNKKQCLS YLSAHQKMKS BACU002817/1-1611 DRRLGKKPIF SSSQQRRQVS DPGAIKNKSW RESNKKEYWS YPSTNQKMKS bmy_09090T0/1-1407 DRRLGKKPIF SSSQQRRQVS DPGAIKNKSW RESNKKEYWS YPSTNQKMKS ENSTTRP00000013674/1-1277 DRRLGKKPIF SSSQQRRQVS DPGAIKNKSW RESNKKEYWS CPSTNQKMKS 601 650 ENSBTAP00000040068/1-1633 DGLGASGHSS STNRNSINKT LKHDDLKEKD -PKPASKSTK ELKTVEKNVS BACU002817/1-1611 DGLGASGHSS STNRNSINKT LKHDDLKEKD GTKTASKSTK ELKTVGKNVS bmy_09090T0/1-1407 DGLGASGHSS STNRNSINKT LKHDDLKEKD GTKTASKSTK ELKTVGKNVS ENSTTRP00000013674/1-1277 DGLGASGHSS STNRNSINKT LKHDDLKEKD GTKTASKSTK ELKTVGKNVS 651 700 ENSBTAP00000040068/1-1633 GKPKAIIKPK TENSDNAKST NLSPRQ---- ---------- --GNGKGVRN BACU002817/1-1611 GKPKPIIKPK TENGDNAKSA NMSPRQVVER SATAAANGQK NSVNGKGVRN bmy_09090T0/1-1407 GKPKPIIKPK TENGDNAKSA NMSPRQVVER SATAAANGQK NSVNGKGVRN ENSTTRP00000013674/1-1277 GKPKSIIKPK TENGDNAKSA NMSPRQVVER SAAAAANGQK NSVNGKGVRN 701 750 ENSBTAP00000040068/1-1633 QEEQITGARP KVLTGNLNVQ AKAKPLKKVT GKDSPHLRMA GPSSRSTNSS BACU002817/1-1611 QEGQITGARP KVLTGNLNVQ AKAKPSKKVT GKDSPCLGIA GPSSRSTNSS bmy_09090T0/1-1407 QEGQITGARP KVLTGNLNVQ AKAKPSKKVT GKDSPCLGIA GPSSRSTNSS ENSTTRP00000013674/1-1277 QEGQITGARP KVLTGNLNVH AKAKPLKKVT GKDSPCLRTS GPSSRSTNSS 751 800 ENSBTAP00000040068/1-1633 MELLTSTDSL DEPKENGSI- --------YL CK-----LLF NLMTHSSSFT BACU002817/1-1611 MELLTSTDCL DEPKENGSIK EKPSGHKLSL CDSPGQTVKN SVESIKTSTV bmy_09090T0/1-1407 MELLTSTDCL DEPKENGSIK EKPSGHKLSL CDSPGQTVKN SVESIKTSTV ENSTTRP00000013674/1-1277 MELLTSTDCL DEPKENGSIK EKPSGHKFSL CDSPGQTVKN SVESIKTSTV 801 850 ENSBTAP00000040068/1-1633 AMKYRPVSKD TNGISNKKST HEQESNTHNS VLKKITSKGY SDPVPQAILK BACU002817/1-1611 AVKSRPVSKV TNGTSNKKSI HEQETNINNS VLKKVTSKGY SDPVPQAILK bmy_09090T0/1-1407 AVKSRPVSKV TNGTSNKKSS HEQETNINNS VLKKVTSKGY SDPIPQAILK ENSTTRP00000013674/1-1277 AVKSRPVSKV TNGTSNKKSI HEQETNINNS VLKKVTSKGY SDPVPQAILK 851 900 ENSBTAP00000040068/1-1633 KRGNGNGCAT APQRTKNATA NLAKTQGKGS QG-SPNSVKS SVSSRQSDEN BACU002817/1-1611 KRGNGNGCAT AQQRTKNATV NLAKTQ--GS QGESSDSVKS SVSSRQSDEN bmy_09090T0/1-1407 KRGNGNGCAT AQQRTKNAAV NLAKTQ--GS QGESSDSVKS SVSSRQSDEN ENSTTRP00000013674/1-1277 KRGNGNGCGT AQQRTKNATV NLAKTQ--GS QGESPHSVKS SGSSRQSDEN 901 950 ENSBTAP00000040068/1-1633 VTKLDHSVTT DKQTPKRKIV KQGQTTLPKI GAKKVTMPKN PNQPKRGENL BACU002817/1-1611 VTKLDHSVTT DKQTPKRKIV KQGQTTLPKI SAKIVAMPKT LNQSKKGETL bmy_09090T0/1-1407 VTKLDHSVTT DKQTPKRKIV KQGQTTLPKI SAKIVAMPKN LNQSKKGETL ENSTTRP00000013674/1-1277 VTKLDHSVTT DKQTPKRKIV KQGQTTLPKI TAKIVAMPKN LNQSKKGETL 951 1000 ENSBTAP00000040068/1-1633 NNKDAKPKTL PEQVILKTLP SSQRPLKSEP SVVQKSVSLD VCDNNNKGSV BACU002817/1-1611 NNKNSKQKTL PGQVILKTQP SSLRPLKSEP SVVQKSVLRD VCDNNNKGNV bmy_09090T0/1-1407 NNKDSKQKTL PGQVILKTQP SSLRPLKSEP SVVQKSVLRD VCDNNNKGNV ENSTTRP00000013674/1-1277 NNKDSKQKTL PGQVILKTQP SSLRPLKSEP SVVQKSVLRD VCDNNNKGNV 1001 1050 ENSBTAP00000040068/1-1633 SEQKPHEPLT NLTAKTSDAE AFQSPCILDS QKTLNNQEKQ KLVLECQNIS BACU002817/1-1611 SEQKPHEPLI NLTAEISDTE AFQSPCIRDP QKPLNNQEKE KLVLECQNIS bmy_09090T0/1-1407 SEQKPHEPLI NLTAEISDTE AFQSPCILDP QKPLNNQEKE KLVLECQNIS ENSTTRP00000013674/1-1277 SEQKPHEPLI NLTAEISDTE ACQSPCILDP QKPLNNQEKE KLVLECQNIS 1051 1100 ENSBTAP00000040068/1-1633 NLDKLIKREL ESKQICSVKT ---------- ------KIPC HSDETDNVDP BACU002817/1-1611 NLDKLIKREL ESKQICSDKS ETNFSGHKKK DQCNTAKIHC RSDESDNVDP bmy_09090T0/1-1407 NLDKLIKHEL ESKQICSDKS ETNFSGHKKT DQCNTAKIHC HSDESDNVDP ENSTTRP00000013674/1-1277 NLDKLIKHEL ESKQICSDKS ETNFSGHKKT DQCNTVKIHC HSDESDNVDP 1101 1150 ENSBTAP00000040068/1-1633 KFYSTTALKS MISNPKENSL NSNPVCDLDS AHVEQLHSEL DRKKQVGRKD BACU002817/1-1611 KFDSTTALKS MISNPNENSL NSNPVCDLDS TNVKQVHSVS DREKQAGRKD bmy_09090T0/1-1407 KFYSTTALKS MISNPNENSL NSNPVCDLDS TNVEQVHSVS DREKQAGRKD ENSTTRP00000013674/1-1277 EFYSTTALKS MISNPNENSL NSNPVCDLDS TNVEQVHSVS DREKQAGRKD 1151 1200 ENSBTAP00000040068/1-1633 TNQK------ ---------- ------SGQD DRKSKIHVEE QTVPSQLSDD BACU002817/1-1611 TNKKLNIKCV KDVLPCVPEQ TNGTLNSGQD DRKSRIHVEE QTIPNQFSDD bmy_09090T0/1-1407 TNKKLNIKCV KDVLPCVPEQ TNGTLNSGQD DRKSRIHVEE QTIPNQFSDD ENSTTRP00000013674/1-1277 TNKKLNIKCV KDVLPCVPEQ TNGTLNSGQD DRKSRIHVEE QTVPHQFSYD 1201 1250 ENSBTAP00000040068/1-1633 SAMNEDNHAT ---------- -----GKNS- KDTETTETSE SHETPEAPFM BACU002817/1-1611 SAMNGDTHAT VDSNTSSKCF LEQIPGKNSP KDMETTETPE SHETREAPFM bmy_09090T0/1-1407 SAMNGDKHAT VDSNTSSKCF LEQIPGKNSP KDMETXETPE SHETREAPFM ENSTTRP00000013674/1-1277 SAMNGDKHAT VDSNTSSKCF LEQIPGKNSP KDMETTETPE SHETPEAPFM 1251 1300 ENSBTAP00000040068/1-1633 SHWNLSTNVL HQRESPESDS GSVTTSSDDI KPRSEDYDAG GSQDDDGSND BACU002817/1-1611 SRWNLSTSVL HQRESPESDS GSATTSSDDI KPRSEDYDAG GSQDDDGSND bmy_09090T0/1-1407 SHWNLSTSVL HQRESPESDS GSATTSSDDI KPRSEDYDAG GSQDDDGSND ENSTTRP00000013674/1-1277 SHWNLSTSVP HQRESPESDS GSATTSSDDI KPRSEDYDAG GSQDDDGSND 1301 1350 ENSBTAP00000040068/1-1633 RGVSKCGTML CHDFLGRSSS DTSTPEELKI YDSNLRIEVK MKKQGSSDLF BACU002817/1-1611 RGISKCGTML CHDFLGRSSS DTSTPEELKI YDSNLRIEVK MKKQSSNDLF bmy_09090T0/1-1407 RGISKCGTML CHDFLGRSSS DTSTPEELKI YDSNLRIEVK MKKQSSNDLF ENSTTRP00000013674/1-1277 RGISKCGTML CHDFLGRSSS DTSTPEELKI YDSNLRIEVK MKKQSSNDLF 1351 1400 ENSBTAP00000040068/1-1633 QVNSTSDDEI PRKRPEIWSR STIVHPREKE NIPRGSVQFV QEVDQVSSSA BACU002817/1-1611 QVNSTSDDEI PRKRPEIWSR STIVHPREKE NIPRGSIQFA QEVDQVSSSA bmy_09090T0/1-1407 QVNSTSDDEI PRKRPEIWSR STIVHPREKE NIPRGSIQFA QEVDQVSSSA ENSTTRP00000013674/1-1277 QVNSTSDDEI PRKRPEIWSR STRVHPREKE NIPRGSIQFA QEVDQVSSSA 1401 1450 ENSBTAP00000040068/1-1633 DETEDERSEA ENVAENFSTS NPALQQFQGI INLAFEDATE NESHEFRVTK BACU002817/1-1611 DETEDERSEA ENVAENFSTS NPALQQFQGI INLAFEDATE NESREFRAAK bmy_09090T0/1-1407 DETEDERSEA ENVAENFSTS SPALQQFQGI INLAFEDATE NESHEFRATK ENSTTRP00000013674/1-1277 DETEDERSEA ENVAENFSTS NPALQQFQGI INLAFEDATE NESHEFRATK 1451 1500 ENSBTAP00000040068/1-1633 SFKRSVLLSV DECEEIGSDE GEVHALFQPS VDSLSPSDVF DGISHEHHGR BACU002817/1-1611 NFKRSVLLSV DECEELGSDE GEVHAPFQPS VDSPSPSDVF DGVSHEHHGR bmy_09090T0/1-1407 NFKRSVLLSV DECEELGSDE GEVHAPFQPS VDSPSPSDVF DGVSHEHHGR ENSTTRP00000013674/1-1277 NFKRSVLLSV DECEELGSDE GEVHAPFQPS VDSPSPSDVF DGVSHEHHGR 1501 1550 ENSBTAP00000040068/1-1633 TCYSRYSHGS EGGVLECRQK KSNTIYKNKS FPLGLSSVDS SRK------- BACU002817/1-1611 VCYSRYSQGS KGSILECRQE KGNSVYKNKS SPLGLSSIDS SRKDKQSASA bmy_09090T0/1-1407 VCYSRYSQGS KGSILECRQE KGNSVYKNKS SPLGLSSIDS SRKDKQSASA ENSTTRP00000013674/1-1277 VCYSRYSQGS KGSILECRQE KANSVYKNKS SPLGLSSIDS SRKDKQSASA 1551 1600 ENSBTAP00000040068/1-1633 ---------- ---------- GDKVCSGSNV DNDFETHSKF SDSDIKSQER BACU002817/1-1611 TEKKSITDVL SRGGRQLPPE DKKVNSGSNM DNDFQPRSKL SDSDIKSQER bmy_09090T0/1-1407 TEKKSITDVL SRGGRQLPPE DKKVNSGSNV DNDFQPRSKL SDSDIKSQER ENSTTRP00000013674/1-1277 TEKKSTTDVL SRGGRQLPPE DKKVNSGSNV VNDFQPRSKL SDSDIKSQER 1601 1650 ENSBTAP00000040068/1-1633 PCHLELRQRE SNSDIPKNSF TKSLDSCRSQ VLPQEGQVKE SHSTATEKAN BACU002817/1-1611 PCHLELHQRD PSSDIPKNSS TKSLDSYWSQ VLPPEGQVKE SHSAATEKAN bmy_09090T0/1-1407 PCHLELHQRD PSSDIPKNSS TKSLDSYWSQ VLPPEGQVKE SHSAATEKAN ENSTTRP00000013674/1-1277 PCHLELHQRD PNSDIPKNSS TKSLDSYWSQ VLPPEGQVKE SHSAATKKAN 1651 1700 ENSBTAP00000040068/1-1633 IALSAGDIDG CDTVAQIYMY DHRPSKTLSP IYEMDVTEAF EQKMESETQG BACU002817/1-1611 IALSAGDIDD CDTVAQIYMY DHRPSKTLSP IYEMDVTEAF EQKMESETHV bmy_09090T0/1-1407 IALSAGDIDD CDTVAQIYMY DHRPSKTLSP IYEMDVTEAF EQKMESETHV ENSTTRP00000013674/1-1277 IALSAGDIDD CDTVAQNYMY DHRPSKTLSP IYEMDVTEAF EQKMESETHV 1701 1750 ENSBTAP00000040068/1-1633 TDMDFEDEQH FAKQDWTLLK QLLSEQDSNL NITNSVPEDL NLAQYLINQT BACU002817/1-1611 TDMDFEDEQH FAKQDWTLLK QLLSEEDSNL NITNSIPEDL NLAQYLINQT bmy_09090T0/1-1407 TDMDFEDEQH FAKQDWTLLK QLLSEEDSNL NITNSIPEDL NLAQYLINQT ENSTTRP00000013674/1-1277 TDMDFEDEQH FAKQDWTLLK QLLSEEDSNL NITNSIPEDL NLAQYLINQT 1751 1800 ENSBTAP00000040068/1-1633 LLLARDSSKP QGKAHVDTLS RWSELTSPFD DSSASITMAS FSSEECSPQG BACU002817/1-1611 LLLARDSSKP QGKAHVDTLN RWSELTSPFD DSSASITMAS FSSEDCSPQG bmy_09090T0/1-1407 LLLARDSSKP QGKAHVDTLN RWSELTSPFD DSSASITMAS FSSEDCSPQG ENSTTRP00000013674/1-1277 LLLARDSSKP QGKAHVDTLN RWSELTSPFD DSSASITMAS FSSEDCSPQG 1801 1850 ENSBTAP00000040068/1-1633 EWTILELETQ H BACU002817/1-1611 EWTILELETQ H bmy_09090T0/1-1407 EWTILELETQ H ENSTTRP00000013674/1-1277 EWTILELETQ H