KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:06 2014 Check: 00 .. Name: ENSTTRP00000002588/1-778 Len: 842 Check: 3773 Weight: 1.00 Name: ENSP00000412292/1-811 Len: 842 Check: 5785 Weight: 1.00 Name: ENSBTAP00000040158/1-810 Len: 842 Check: 1501 Weight: 1.00 Name: BACU009941/1-562 Len: 842 Check: 1241 Weight: 1.00 Name: bmy_13603T0/1-485 Len: 842 Check: 5959 Weight: 1.00 // 1 50 ENSTTRP00000002588/1-778 MENQGVPPGP YRATRLWNEV TTSFRAGMPL RKHRQHFKKY GNCFTAGEAV ENSP00000412292/1-811 MESQGVPPGP YRATKLWNEV TTSFRAGMPL RKHRQHFKKY GNCFTAGEAV ENSBTAP00000040158/1-810 MENRDVPPGP YRATKLWNEI TTSFRVGMPL RKHRQHFKKY GNCFTAGEAV BACU009941/1-562 ---------- ---------- ---------- ---------- ---------- bmy_13603T0/1-485 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002588/1-778 DWLYDLLRNN SNFGPEVTRQ QTIQLLRKFL KNHVIEDIKG KWGSENLDDN ENSP00000412292/1-811 DWLYDLLRNN SNFGPEVTRQ QTIQLLRKFL KNHVIEDIKG RWGSENVDDN ENSBTAP00000040158/1-810 DWLYDLLRTN SNFGPEVTRQ QTIQLLRKFL KNHVIEDIKG KWGTENLDDN BACU009941/1-562 ---------- ---------- ---------- ---------- ---------- bmy_13603T0/1-485 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000002588/1-778 SQLFXXXXXX XXXXXXRRHP ELRKNRIENF SKDKDSI--L RNLSRRTRKK ENSP00000412292/1-811 NQLFRFPATS PLKTLPRRYP ELRKNNIENF SKDKDSIFKL RNLSRRTPKR ENSBTAP00000040158/1-810 SQLFRFPTSS PLKTLPRRHP ELRKNNIENF SKDKDSIFKL RNLSRRTPKK BACU009941/1-562 ---------- ---------- ---------- ---------- ---------- bmy_13603T0/1-485 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000002588/1-778 HGLHFSQENA EKMNCEIINE HQENSIDNRE ISQKDVEEAW RYVILIYLQT ENSP00000412292/1-811 HGLHLSQENG EKIKHEIINE DQENAIDNRE LSQEDVEEVW RYVILIYLQT ENSBTAP00000040158/1-810 HGLHFSQENS EKMNCEIIEE DQENLAENRE ISQKDVEEVW RYVILIYLQT BACU009941/1-562 ---------- ---------- ---------- ---------- ---------- bmy_13603T0/1-485 ---------- ---------- ---------- ---------- ------MLTY 201 250 ENSTTRP00000002588/1-778 ILGVSSLEEV INPKQVIPQC IMYNMTNTSK HGVVILQDKS DDLPHWVLSA ENSP00000412292/1-811 ILGVPSLEEV INPKQVIPQY IMYNMANTSK RGVVILQNKS DDLPHWVLSA ENSBTAP00000040158/1-810 VLGVSSLEEV INPKQVIPQY IMYNMTNTSK HGVVILQDKS DDLPHWVLSA BACU009941/1-562 ---------- ---------- ---------- ---------- ---------- bmy_13603T0/1-485 ILALGRMEL- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000002588/1-778 MKCLANXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000412292/1-811 MKCLANWPRS NDMNNPTYVG FERDVFRTIA DYFLDLPEPL LTFEYYELFV ENSBTAP00000040158/1-810 MKCLANWPRS NDMNNPTYIG FERDVFRTIA DYFLDLPEPL LTFEYYELFV BACU009941/1-562 MKCLANWPRS NDMNNPTYVG FERDVFRTIA DYFLDLPEPL LTFEYYELFV bmy_13603T0/1-485 ------WPLL KSTKGTSTAT YTQEAFQ--- ---------- ---------- 301 350 ENSTTRP00000002588/1-778 XXXXVCGYVT VSDRPSGIHK IQDDPQSSKI LHLNSLNSFK STECLLLSLL ENSP00000412292/1-811 NILVVCGYIT VSDRSSGIHK IQDDPQSSKF LHLNNLNSFK STECLLLSLL ENSBTAP00000040158/1-810 NILVVCGYVT VSDRPRGIHK IQDDPQSSKI LHLNNLNSFK STECLLLSLL BACU009941/1-562 NILVVCGYVT VSDRPSGIHK IQDDPQSSKI LHLNSLNSFK STECLLLSLL bmy_13603T0/1-485 ---------- --KQNQGICQ VKSTPQWNEV -----TTSFR AGMPLRKHRQ 351 400 ENSTTRP00000002588/1-778 HKDK------ NKEESDTTER LQISDQGFQE NYAKKMQLVN LKN--RRASV ENSP00000412292/1-811 HREK------ NKEESDSTER LQISNPGFQE RCAKKMQLVN LRN--RRVSA ENSBTAP00000040158/1-810 HKDK------ TKEESDTTER LQISDQGFQE KYDKKMQLVN FKN--RRASA BACU009941/1-562 HKDK------ NKEESDTTER LQISDQGFQE NYAKKMQLVN LKN--RRASV bmy_13603T0/1-485 HFKKYGNCFT AGEAVDWLYD LLRNNSNFGP EVTRQQTIQL LRKFLKNHVI 401 450 ENSTTRP00000002588/1-778 NDIMGGS-CH NLIGLSSMHV LSSSIK---- PRCYSLEGII DLPGSSSKEV ENSP00000412292/1-811 NDIMGGS-CH NLIGLSNMHD LSSNSK---- PRCCSLEGIV DVPGNSSKEA ENSBTAP00000040158/1-810 NDIIGGS-CY NLIGLSRMHV LSSNIK---- PRCYSLEGIV DLPGSSSKEV BACU009941/1-562 NDIMGGS-CH NLIGLSSMHV LSSSIK---- PRCYSLEGIV DLPGSSSKEV bmy_13603T0/1-485 EDIKGKWGSE NLDDNSQLFR FPANSPLKTL PRRHP-ELRK NRIENFSKDK 451 500 ENSTTRP00000002588/1-778 SSVFHQSVLN IKGQNNKQFL ESETKQESL- ---MHLHSEE SIQK------ ENSP00000412292/1-811 SSVFHQSFPN IEGQNNKLFL ESKPKQEFL- ---LNLHSEE NIQK------ ENSBTAP00000040158/1-810 SSVFHQSVLN IEGQNNMQSL GSETKQESL- ---MNLHSEE GIQK------ BACU009941/1-562 SSVFHQSVLN IKGQNNKQFL ESETKQESL- ---MNLHSEE SIQK------ bmy_13603T0/1-485 DSIFKLRNLS RRTPKKHGLH FSQENAEKMN CEIINEDQEN SVDNREISQK 501 550 ENSTTRP00000002588/1-778 ------PLCV GFKRTSTLTV QDQEELCNGK CKSKQLCRSQ SLLLRSSTRR ENSP00000412292/1-811 ------PFSA GFKRTSTLTV QDQEELCNGK CKSKQLCRSQ SLLLRSSTRR ENSBTAP00000040158/1-810 ------PFSV GYKRTSTLTT QDQEELYNGK CKPKQLCRSQ SLLLRSSTRR BACU009941/1-562 ------PLCV AFKRTSTLTV QDQEELCNGK CKSKQLCRSQ SLLLRSSTRR bmy_13603T0/1-485 DVEEVWRYVI LIYLQTILGV SSLEEVIN-- --PKQVIPQY IMYNMTNTSK 551 600 ENSTTRP00000002588/1-778 NSYINMPVAE IIMKPNLGQG STSVQTAMEG ELGESSTTVN KRLCKSTIEL ENSP00000412292/1-811 NSYINTPVAE IIMKPNVGQG STSVQTAMES ELGESSATIN KRLCKSTIEL ENSBTAP00000040158/1-810 NSYINMPVAE IIMKPNLEQG STSVQTAMEG ELGESSTTIN KRLCKSTIEL BACU009941/1-562 NSYINMPVAE IIMKPNLGQG STSVQTAMEG ELGESSTTVN KRLCKSTIEL bmy_13603T0/1-485 HGV------- VILQDKSGPR SNDMNNP--S YVG-FERDVF RTIADYFLDL 601 650 ENSTTRP00000002588/1-778 SENSLP-PAS SMLTGTQSLL QPHLERVAID ALQLCCLLLP PPNRRRLQLL ENSP00000412292/1-811 SENSLL-PAS SMLTGTQSLL QPHLERVAID ALQLCCLLLP PPNRRKLQLL ENSBTAP00000040158/1-810 SENSLP-PAS SMLTGTQSLL QPHLERVAID ALQLCCLLLP PPNRRKLQLL BACU009941/1-562 SENSLP-PAS SMLTGTQSLL QPHLERVAID ALQLCCLLLP PPNRRRLQLL bmy_13603T0/1-485 PEPLLTFEYY ELFVNILGLL QPHLERVAID ALQLCCLLLP PPNRRRLQLL 651 700 ENSTTRP00000002588/1-778 MRMISRMSQN VDMPQLHDAM GTRSLMIHTF SRCVLRCAEE VDLDELLAAR ENSP00000412292/1-811 MRMISRMSQN VDMPKLHDAM GTRSLMIHTF SRCVLCCAEE VDLDELLAGR ENSBTAP00000040158/1-810 MRMISRMS-N VDMPQLHDAM GTDHWMIHTF SRSVLRCAEE VDLDELLAAR BACU009941/1-562 MRMISRMSQN VDMPQLHDAM GTRSLMIHTF SRCVLRCAEE VDLDELLAAR bmy_13603T0/1-485 MRMISRMSQN VDMPQLHDAM GTRSL----- ---------- ---------- 701 750 ENSTTRP00000002588/1-778 LVSFLMDHQQ EILQVPSYLQ TAVEKHLDYL RKGHV----- -CILSLKILC ENSP00000412292/1-811 LVSFLMDHHQ EILQVPSYLQ TAVEKHLDYL KKGHIENPGD GLFAPLPTYS ENSBTAP00000040158/1-810 LVSFLMDHQQ EILQVPSYLL AAVEKHLDYL RKGHIKNPGD GVIAPLPTYS BACU009941/1-562 LVSFLMDHQQ EILQVPSYLQ TAVEKHLDYL RKGHIKNPGD GVIAPLPTYS bmy_13603T0/1-485 ---------- ---------- ---------- ----IKNPGD GVIAPLPTYS 751 800 ENSTTRP00000002588/1-778 ISQLVA---- -----NSSQT SLIK--GDFI SSHKPP---- --KVKNVDRI ENSP00000412292/1-811 YCKQISAQEF DEQKVSTSQA AIAELLENII KNRSLPLKEK RKKLKQFQKE ENSBTAP00000040158/1-810 YCKQISAQEF DEQKVSTSQA AIAELLENII KNKSLPLKEK RRKIKQFQKE BACU009941/1-562 YCKQISAQEF DEQKVSTSQA AVAELLENII KNKSLPVKEK RKKLKQFQKE bmy_13603T0/1-485 YCKQISAQEF DEQKVSTSQA AVAELLENII KNKSLPVKEK RKXLKQFQKE 801 850 ENSTTRP00000002588/1-778 W--------- NSNSNRTVSI PSSLISISVL YLKMAPSHDG YG ENSP00000412292/1-811 YPLIYQKRFP TTESEAALFG DKPTIKQPML ILRKPKFRSL R- ENSBTAP00000040158/1-810 YPLIYQKRFP TSESEAALFG DKPTIKQPML FLRKPKFRSL R- BACU009941/1-562 YPLIYQKRFP TSENEAALFG DKPTIKQPML ILRKPKFRTL RY bmy_13603T0/1-485 YPLIYQKRFP TSESEAALFG DKPTIKQPML ILRKPKFRSL RY