KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:07 2014 Check: 00 .. Name: ENSTTRP00000007427/1-1332 Len: 1338 Check: 9010 Weight: 1.00 Name: bmy_06433T0/1-770 Len: 1338 Check: 3051 Weight: 1.00 Name: ENSBTAP00000040185/1-993 Len: 1338 Check: 6994 Weight: 1.00 Name: ENSP00000263269/1-1336 Len: 1338 Check: 5767 Weight: 1.00 Name: BACU002173/1-750 Len: 1338 Check: 4313 Weight: 1.00 // 1 50 ENSTTRP00000007427/1-1332 MRGAGGPRGP RGPAKMLLLL ALACASPFPE EVPGPGGAGG TGGEPG-GAR bmy_06433T0/1-770 MRGAGGPRGP RGPAKMLLLL ALACASPFPE EVPGPGGPG- --GGPG-GAR ENSBTAP00000040185/1-993 MRGAGGPRGP RGPAKMLLLL ALACASPFPE EVPGPGGPAG --GGPG-GAR ENSP00000263269/1-1336 MRGAGGPRGP RGPAKMLLLL ALACASPFPE EAPGPGGAGG PGGGLG-GAR BACU002173/1-750 ---------- ---------- ---------- ---------- --MQLGSGER 51 100 ENSTTRP00000007427/1-1332 PLKVALVFSG PEYATEAARL GPVEAAAARS PGLD-RPVAL VLNGSDSRSL bmy_06433T0/1-770 PLNVALVFSG PAYATEAARL GPAVAAAVRS PGLDVRPVAL VLNGSDPRSL ENSBTAP00000040185/1-993 PLNVALVFSG PAYATEAARL GPAVAAAVRS PGLDVRPVAL VLNGSDPRSL ENSP00000263269/1-1336 PLNVALVFSG PAYAAEAARL GPAVAAAVRS PGLDVRPVAL VLNGSDPRSL BACU002173/1-750 PVKEG----- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000007427/1-1332 VLQLCDMLSG LRVHGVVFED DSRAPAVAPI LDFLSAQTSL PIVAVHGGAA bmy_06433T0/1-770 VLQLCDLLSG LRVHGVVFED DSRAPAVAPI LDFLSAQTSL PIVAVHGGAA ENSBTAP00000040185/1-993 VLQLCDLLSG LRVHGVVFED DSRAPAVAPI LDFLSAQTSL PIVAVHGGAA ENSP00000263269/1-1336 VLQLCDLLSG LRVHGVVFED DSRAPAVAPI LDFLSAQTSL PIVAVHGGAA BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000007427/1-1332 LVLTPKEKGS TFLQLGSSTE QQLQVIFEVL EEYDWTSFVA VTTRAPGHRA bmy_06433T0/1-770 LVLTPKEKGS TFLQLGSSTE QQLQVIFEVL EEYDWTSFVA VTTRAPGHRA ENSBTAP00000040185/1-993 LVLTPKEKGS TFLQLGSSTE QQLQVIFEVL EEYDWTSFVA VTTRAPGHRA ENSP00000263269/1-1336 LVLTPKEKGS TFLQLGSSTE QQLQVIFEVL EEYDWTSFVA VTTRAPGHRA BACU002173/1-750 ------EKGS TFLQLGSSTE QQLQVIFEVL EEYDWTSFVA VTTRAPGHRA 201 250 ENSTTRP00000007427/1-1332 FLSYIEVLTD GSLVGWEHRG ALTLDPGAGE AVLGAQLRSV SAQIRLLFCA bmy_06433T0/1-770 FLSYIEVLTD GSLVGWEHRG ALTLDPGAGE AVLGAQLRSV SAQIRLLFCA ENSBTAP00000040185/1-993 FLSYIEVLTD GSLVGWEHRG ALTLDPGAGE AVLSAQLRSV SAQIRLLFCA ENSP00000263269/1-1336 FLSYIEVLTD GSLVGWEHRG ALTLDPGAGE AVLSAQLRSV SAQIRLLFCA BACU002173/1-750 FLSYIEVLTD GSLVGWEHRG ALTLDPGAGE AVLGAQLRSV SAQIRLLFCA 251 300 ENSTTRP00000007427/1-1332 REEAEPVFRA AEEAGLTGPG YVWFMVGPQL AGGGGSGTPG EPLLLPGGAP bmy_06433T0/1-770 REEAEPVFRA AEEAGLTGPG YVWFMVGPQL AGGGGSGTPG EPLLLPGGAP ENSBTAP00000040185/1-993 REEAEPVFRA AEEAGLTGPG YVWFMVGPQL AGGGGSGAPG EPPLLPGGAP ENSP00000263269/1-1336 REEAEPVFRA AEEAGLTGSG YVWFMVGPQL AGGGGSGAPG EPPLLPGGAP BACU002173/1-750 REEAEPVFRA AEEAGLTGPG YVWFMVGPQL AGGGGSGTPG EPLLLPGGAP 301 350 ENSTTRP00000007427/1-1332 LPAGLFAVRS AGWRDDLARR VAAGVAVVAR GAQALLRDYG FLPELGHDCR bmy_06433T0/1-770 LPAGLFAVRS AGWRDDLARR VAAGVA---- ---------- ---------- ENSBTAP00000040185/1-993 LPAGLFAVRS AGWRDDLARR VAAGVAVVAR GAQALLRDYG FLPELGHDCR ENSP00000263269/1-1336 LPAGLFAVRS AGWRDDLARR VAAGVAVVAR GAQALLRDYG FLPELGHDCR BACU002173/1-750 LPAGLFAVRS AGWRDDLARR VAAGVAVVAR GAQALLRDYG FLPELGHDCR 351 400 ENSTTRP00000007427/1-1332 AQNRTHRGES LHRYFMNITW DNRDYSFNED GFLVNPSLVV ISLTRDRTWE bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 AQNRTHRGES LHRYFMNITW DNRDYSFNED GFLVNPSLVV ISLTRDRTWE ENSP00000263269/1-1336 AQNRTHRGES LHRYFMNITW DNRDYSFNED GFLVNPSLVV ISLTRDRTWE BACU002173/1-750 AQNRTHRGES LHRYFMNITW DNRDYSFNED GFLVNPSLVV ISLTRDRTWE 401 450 ENSTTRP00000007427/1-1332 VVGSWEQQTL RLKYPLWSRY GRFLQPVDDT QHLTVATLEE RPFVIVEPAD bmy_06433T0/1-770 -VGSWEQQTL RLKYPLWSRY GRFLQPVDDT QHLTVATLEE RPFVIVEPAD ENSBTAP00000040185/1-993 VVGSWEQQTL RLKYPLWSRY GRFLQPVDDT QHLTVATLEE RPFVIVEPAD ENSP00000263269/1-1336 VVGSWEQQTL RLKYPLWSRY GRFLQPVDDT QHLTVATLEE RPFVIVEPAD BACU002173/1-750 VVGSWEQQTL RLKYPLWSRY GRFLQPVDDT QHLTVATLEE RPFVIVEPAD 451 500 ENSTTRP00000007427/1-1332 PISGTCIRDS VPCRSQLNRT HXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_06433T0/1-770 PISGTCIRDS VPCRSQLNRT HSPPPDAPRP EKRCCKGFCI DILKRLAQTI ENSBTAP00000040185/1-993 PISGTCIRDS VPCRSQLNRT HSPPPDAPRP EKRCCKGFCI DILKRLAQTI ENSP00000263269/1-1336 PISGTCIRDS VPCRSQLNRT HSPPPDAPRP EKRCCKGFCI DILKRLAHTI BACU002173/1-750 PISGTCIRDS VPCRSQLNRT HSPPPDAPRP EKRCCKGFCI DILKRLAQTI 501 550 ENSTTRP00000007427/1-1332 XXXXXXXXXX XXXXXXXXXX XXXXXXXXVF YQRADMAIGS LTINEERSEI bmy_06433T0/1-770 GFSYDLYLVT NGKHGKKIDG VWNGMIGEVF YQRADMAIGS LTINEERSEI ENSBTAP00000040185/1-993 GFSYDLYLVT NGKHGKKIDG VWNGMIGEVF YQRADMAIGS LTINEERSEI ENSP00000263269/1-1336 GFSYDLYLVT NGKHGKKIDG VWNGMIGEVF YQRADMAIGS LTINEERSEI BACU002173/1-750 GFSYDLYLVT NGKHGKKIDG VWNGMIGEVF YQRADMAIGS LTINEERSEI 551 600 ENSTTRP00000007427/1-1332 VDFSVPFVET GISVMVARSN GTVSPSAFLX XXXXXXXXXX XXXXXXXXXX bmy_06433T0/1-770 VDFSVPFVET GISVMVARSN GTVSPSAFLE PYSPAVWVMM FVMCLTVVAV ENSBTAP00000040185/1-993 VDFSVPFVET GISVMVARSN GTVSPSAFLE PYSPAVWVMM FVMCLTVVAV ENSP00000263269/1-1336 VDFSVPFVET GISVMVARSN GTVSPSAFLE PYSPAVWVMM FVMCLTVVAV BACU002173/1-750 VDFSVPFVET GISVMVARSN GTVSPSAFLE PYSPAVWVMM FVMCLTVVAV 601 650 ENSTTRP00000007427/1-1332 XXXXXXXXXX XXXXXXXXTG KRPGGSTFTI GKSIWLLWAL VFNNSVPVEN bmy_06433T0/1-770 TVFIFEYLSP VGYNRSLATG KRPGGSTFTI GKSIWLLWAL VFNNSVPVEN ENSBTAP00000040185/1-993 TVFIFEYLSP VGYNRSLATG KRPGGSTFTI GKSIWLLWAL VFNNSVPVEN ENSP00000263269/1-1336 TVFIFEYLSP VGYNRSLATG KRPGGSTFTI GKSIWLLWAL VFNNSVPVEN BACU002173/1-750 TVFIFEYLSP VGYNRSLATG KRPGGSTFTI GKSIWLLWAL VFNNSVPVEN 651 700 ENSTTRP00000007427/1-1332 PRGTTSKIMV LVWAFFAVIF LASYTANLAA FMIQEEYVDT VSGLSDRKFQ bmy_06433T0/1-770 PRGTTSKIMV LVWAFFAVIF LASYTANLAA FMIQEEYVDT VSGLSDRKFQ ENSBTAP00000040185/1-993 PRGTTSKIMV LVWAFFAVIF LASYTANLAA FMIQEEYVDT VSGLSDRKFQ ENSP00000263269/1-1336 PRGTTSKIMV LVWAFFAVIF LASYTANLAA FMIQEEYVDT VSGLSDRKFQ BACU002173/1-750 PRGTTSKIMV LVWAFFAVIF LASYTANLAA FMIQEEYVDT VSGLSDRKFQ 701 750 ENSTTRP00000007427/1-1332 RPQEQYPPLK FGTVPNGSTE KNIRSNYPDM HSYMVRYNQP RVEEALTQLK bmy_06433T0/1-770 RPQEQYPPLK FGTVPNGSTE KNIRSNYPDM HSYMVRYNQP RVEEALTQLK ENSBTAP00000040185/1-993 RPQEQYPPLK FGTVPNGSTE KNIRSNYPDM HSYMVRYNQP RVEEALTQLK ENSP00000263269/1-1336 RPQEQYPPLK FGTVPNGSTE KNIRSNYPDM HSYMVRYNQP RVEEALTQLK BACU002173/1-750 RPQEQYPPLK FGTVPNGSTE KNIRSNYPDM HSYMVRYNQP RVEEALTQLK 751 800 ENSTTRP00000007427/1-1332 AGKLDAFIYD AAVLNYMARK DEGCKLVTIG SGKVFATTGY GIALHKGS-R bmy_06433T0/1-770 AGSAQT---- ---------- --GGREFPKS WGKLRSPMDP LSPLPRAPLP ENSBTAP00000040185/1-993 AGKLDAFIYD AAVLNYMARK DEGCKLVTIG SGKVFATTGY GIALHKGS-R ENSP00000263269/1-1336 AGKLDAFIYD AAVLNYMARK DEGCKLVTIG SGKVFATTGY GIALHKGS-R BACU002173/1-750 AGKLDAFIYD AAVLNYMARK DEGCKLVTIG SGKVFATTGY GIALHKGS-R 801 850 ENSTTRP00000007427/1-1332 WKRPIDLALL QFLGDDEIEM LERLWLSGIC HNDKIEVMSS KLDIDNMAGV bmy_06433T0/1-770 GGHPLSLCLA PFAFTFPIFM NE-------- ---------- ----GNLTFS ENSBTAP00000040185/1-993 WKRPIDLALL QFLGDGAAAR RD-------- ---------- ---------- ENSP00000263269/1-1336 WKRPIDLALL QFLGDDEIEM LERLWLSGIC HNDKIEVMSS KLDIDNMAGV BACU002173/1-750 WKRPIDLALL QFLGDDEIEM LERLWLSGIC HNDKIEVMSS KLDIDNMAGV 851 900 ENSTTRP00000007427/1-1332 FYMLLVAMGL SLLVFAWEHL VYWRLRHCLG PTHRMDFLLA FSRGMYSCCS bmy_06433T0/1-770 VYLIL----- -----TFGEQ EFQDLGKGRT LMSHIYLVPE F--------- ENSBTAP00000040185/1-993 ---------- -----AWGVG --WGAGAGEG KWRRXLLLPR SLQGMYSCCS ENSP00000263269/1-1336 FYMLLVAMGL SLLVFAWEHL VYWRLRHCLG PTHRMDFLLA FSRGMYSCCS BACU002173/1-750 FYMLLVAMGL SLLVFAWEHL VYWRLRHCLG PTHRMDFLLA FSRV------ 901 950 ENSTTRP00000007427/1-1332 AEAAPPPAKP PPPPQPLPSP VYPAARPAPG PAPFIPRERA TVDRWRRAKG bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ----WRAVRV ENSBTAP00000040185/1-993 AEAAPPPAKP PPPPQPLPSP VYPAARPPPG PAPFVPRERA AVDRWRRPKG ENSP00000263269/1-1336 AEAAPPPAKP PPPPQPLPSP AYPAPRPAPG PAPFVPRERA SVDRWRRTKG BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 951 1000 ENSTTRP00000007427/1-1332 AGPPGGASLA DGFHRYYGPI EPQ--GLGVG EARAAPRGAT GRPLSPPATQ bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 AGPPGGAGLA DGFHRYYGPI EPQ--GLGVG EARAAPRGAT GRPLSPPTTQ ENSP00000263269/1-1336 AGPPGGAGLA DGFHRYYGPI EPQGLGLGLG EARAAPRGAA GRPLSPPAAQ BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000007427/1-1332 PPQKPPPSYF AIVRDKEPAE TPAGAFPGFP SPPAPPAAAA TAVGPPLCRL bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 PPQKPPPSYF AIVRDKEPAE PPAGAFPGFP SPPAPPAAAA TAVG------ ENSP00000263269/1-1336 PPQKPPPSYF AIVRDKEPAE PPAGAFPGFP SPPAPPAAAA TAVGPPLCRL BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSTTRP00000007427/1-1332 AFEDESPPAP TRWPRSDPES QPLLGPGAGG AGGAGGAGGG AQAAPPPCRA bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- ---------- ---------- ENSP00000263269/1-1336 AFEDESPPAP ARWPRSDPES QPLLGPGAGG AGGTGGAGGG APAAPPPCRA BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSTTRP00000007427/1-1332 APPPCPYLDL EPSPSDSEDS ESLGGASLGG LEPWWFADFP YPYAERLGPP bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- ---------- ---------- ENSP00000263269/1-1336 APPPCPYLDL EPSPSDSEDS ESLGGASLGG LEPWWFADFP YPYAERLGPP BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSTTRP00000007427/1-1332 PGRYWSVDKL GGWRAGSWDY LPPRSGPAAW HCRHCASLEL LPPPLHLSCS bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- ---------- ---------- ENSP00000263269/1-1336 PGRYWSVDKL GGWRAGSWDY LPPRSGPAAW HCRHCASLEL LPPPRHLSCS BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSTTRP00000007427/1-1332 HDSLDGGWWA PPPPPWAAGP -PPHRARCGC PRSHPHRLRA SHRAPAVVTP bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- ---------- ---------- ENSP00000263269/1-1336 HDGLDGGWWA PPPPPWAAGP LPRRRARCGC PRSHPHRPRA SHRTPAAAAP BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1251 1300 ENSTTRP00000007427/1-1332 HHHRHRRAAG GWDLPPPAPT SRSLEDISSC PRAAPARRLT GPSRHARRCP bmy_06433T0/1-770 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- ---------- ---------- ENSP00000263269/1-1336 HHHRHRRAAG GWDLPPPAPT SRSLEDLSSC PRAAPARRLT GPSRHARRCP BACU002173/1-750 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSTTRP00000007427/1-1332 HAAHWGPPLP AAPHRRHRGG DLSTRRGSAH FSSLESEV bmy_06433T0/1-770 ---------- ---------- ---------- -------- ENSBTAP00000040185/1-993 ---------- ---------- ---------- -------- ENSP00000263269/1-1336 HAAHWGPPLP TASHRRHRGG DLGTRRGSAH FSSLESEV BACU002173/1-750 ---------- ---------- ---------- --------