KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:07 2014 Check: 00 .. Name: BACU011511/1-186 Len: 250 Check: 5732 Weight: 1.00 Name: bmy_15330T0/1-211 Len: 250 Check: 4271 Weight: 1.00 Name: ENSBTAP00000040191/1-154 Len: 250 Check: 8424 Weight: 1.00 Name: ENSP00000348316/1-181 Len: 250 Check: 2297 Weight: 1.00 Name: ENSTTRP00000013639/1-179 Len: 250 Check: 2259 Weight: 1.00 // 1 50 BACU011511/1-186 MKAYCERQGL SM-------- ---------- --------RQ IRFRFDGQPI bmy_15330T0/1-211 WRVLQRSPAL GCGGYSTLLR PDPFSTPLPR QPTSLLGAMT TTTTFKGVDP ENSBTAP00000040191/1-154 ---------- ---------- ---------- --------MT TTTTFKGVDP ENSP00000348316/1-181 ---------- ---------- ---------- --------MT TTTTFKGVDP ENSTTRP00000013639/1-179 ---------- ---------- ---------- --------MT TTTTFKGVDP 51 100 BACU011511/1-186 NETDTPAQVK MSLVLRPPGG GSNFSLGFDE PAEQPVRRNK MASSIFGTPE bmy_15330T0/1-211 NSRNS----- -SRVLRPPGG GSNFSLGFDE PAEQPVRRNK MASSIFGTPE ENSBTAP00000040191/1-154 NSRNS----- -SRVLRPPGG GSNFSLGFDE PTEQPVRRNK MASSIFGTPE ENSP00000348316/1-181 NSRNS----- -SRVLRPPGG GSNFSLGFDE PTEQPVRKNK MASNIFGTPE ENSTTRP00000013639/1-179 NSRNS----- -SRVLRPPGG GSNFSLGFDE PTEQPVRRNK MASSIFGTPE 101 150 BACU011511/1-186 ENPPSWAKSA GLSIVFLKKV YFDSGAKSCG GREDSESSGP QRRNSSEANP bmy_15330T0/1-211 ENPPSWAKSA GLSIVFLKKV YFDSGAKSCG GREDSESSGP QRRNSSEANP ENSBTAP00000040191/1-154 ENPPSWAKSA ---------- ----GAKSSG GREDAESSGP QRRNSSEANS ENSP00000348316/1-181 ENQASWAKSA ---------- ----GAKSSG GREDLESSGL QRRNSSEASS ENSTTRP00000013639/1-179 ENPPSWAKSA ---------- -----AKSCG GREDSESSGP QRSNSSEANP 151 200 BACU011511/1-186 ADFLDLK--- --GEGDVHEN VDTDLQASLG QSEEKPVPAA PVPS-----P bmy_15330T0/1-211 GDFLDLKARE PQGEGDVHEN VDTDLQASLG QSEEKPVPAA PVPS-----P ENSBTAP00000040191/1-154 GDFLDLK--- --GEGDVHEN VDTDLQASLG QSEEKPVPAA PVPS-----P ENSP00000348316/1-181 GDFLDLK--- --------KM WTQTCQAAWG RVKRSPCLLR LCPARWPRPQ ENSTTRP00000013639/1-179 GDFLDLK--- ---------K TTQTCRPAWG RARRSLCPLP LCPAQWHRRP 201 250 BACU011511/1-186 VAPAPVPSRR NPPGG----- ---------- -------KSS LVLG------ bmy_15330T0/1-211 VAPAPVPSRR NPPGG----- ---------- -------KSS LVLG------ ENSBTAP00000040191/1-154 VAPAPVPSRR NPPGG----- ---------- -------KSS LVLG------ ENSP00000348316/1-181 CHPEEIPLAA SPASSWVSSD CPERCRSVCF LHACELHNLS LTVHLLDLFH ENSTTRP00000013639/1-179 CHPGETPLVA SPASSWVSSV CPELCRFVCF LHACELHNLS LTVHVLDLFH