KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:11 2014 Check: 00 .. Name: ENSP00000465261/1-805 Len: 872 Check: 6425 Weight: 1.00 Name: ENSTTRP00000010276/1-809 Len: 872 Check: 9516 Weight: 1.00 Name: ENSBTAP00000040210/1-769 Len: 872 Check: 8880 Weight: 1.00 Name: bmy_13161T0/1-769 Len: 872 Check: 9895 Weight: 1.00 Name: BACU011561/1-810 Len: 872 Check: 5215 Weight: 1.00 // 1 50 ENSP00000465261/1-805 MAQPLAFILD VPETPGDQG- -QGPSPYDES EVHDSFQQLI QEQSQCTAQE ENSTTRP00000010276/1-809 MSRSLAFVLN VPETPQDPED -QEPSPYDES EVHDSFHQLI QEQSRWVAEE ENSBTAP00000040210/1-769 MSQSPAFVLN VLETPEDPEG SQEPSPYDES EVHDSFHQLI QEQSRWVAEE bmy_13161T0/1-769 MSQSLAFALN VPETPQDPED SQEPSPYDES EVHDSFHQLI QEQSRWVAEE BACU011561/1-810 MSRSLAFVLN VPETPQDPED SQEPSPYDES EVHDSFHQLI QEQSRWVAEE 51 100 ENSP00000465261/1-805 GLELQQRERE -----VTGSS QQTLWRPEGT Q--STATLRI LASMPSRTIG ENSTTRP00000010276/1-809 GLELQQRVLG AGALGASGSD RQALLGPESA PVYSTATLRI LASMPSRTIG ENSBTAP00000040210/1-769 GLELQQRQPE TGALGASGSD HETMLGPEGA PVYSMATLRI LASMPSRTIG bmy_13161T0/1-769 GLELQQRVPG AGALGASGSD RQALLGPEGA PVYSTATLRI LASMPSRTIG BACU011561/1-810 GLELQQRVPG AGALGASGSD RQALLGPEGA PVYSTATLHI LASMPSRTIG 101 150 ENSP00000465261/1-805 RSRGAIISQY YNRTVQLRCR SSRPLLGNFV RSAWPSLRLY DLELDPTALE ENSTTRP00000010276/1-809 RSRGAIISQY YSRTVRLRRR AGWPQLRDVG RSARPSLRLY DLELDPVVLE ENSBTAP00000040210/1-769 RSRGAIISQY YSRTVKLRRR AGRPQLRDMG RSARPSLRLY DLELDSAVLE bmy_13161T0/1-769 RSRGAILSQY YSRTVRLRRR AGRPQLRDVG RSARPSLRLY DLELDSAVLE BACU011561/1-810 RSRGAILSQY YSRTVRLRRR AGRPQLRDVG RSARPSLRLY DLELDPAVLE 151 200 ENSP00000465261/1-805 EEEKQSLLVK ELQSLAVAQR DHMLRGMPLS LAEKRSLREK SRTPRGKWRG ENSTTRP00000010276/1-809 EEEKRGLLVK ELQGLTVAQR DHMLRGMPLS LAEKRCLREE SRPPRGKRRV ENSBTAP00000040210/1-769 EEEKRGLLVK ELQGLTAAQR DHMLRGMPLS LAEKRGLREE SRPPRGKHRA bmy_13161T0/1-769 EDEKRGLLVK ELQGLTVAQR DHMLRGMPLS LSEKRCLREE SRPPRGKRRA BACU011561/1-810 EDEKRGLLVK ELQGLTVAQR DHMLRGMPLS LSEKRCLREE SRPPRGKRRA 201 250 ENSP00000465261/1-805 QPGSGGVCSC CGRLRYACVL ALHSLGLALL SALQALMPWR YALKRIGGQF ENSTTRP00000010276/1-809 R-GH-GLLSC CSRLRDSCIL ASHNLGLALL SGLQALMPWH YALKRIGGQF ENSBTAP00000040210/1-769 Q-WHRGLLSC CDQLRDSCVL ASHNLGLALL SGLQALMPWH YALKRIGGRF bmy_13161T0/1-769 R-GHRGLLSC CSQLRDSCIL ASHDLGLALL SGLQALMPWH YALKRIGGQF BACU011561/1-810 W-GHRGLLSC CSQLRDSCIL ASHNLGLALL SGLQALMPWH YALKRIGGQF 251 300 ENSP00000465261/1-805 GSSVLSYFLF LKTLLAFNAL LLLLLVAFIM GPQVAFPPAL PGPAPVCTGL ENSTTRP00000010276/1-809 GSSVLSYFLF LKTLLAFNTL LLLPLLAFIV AVQAAFPPAP SGSTPAFRGL ENSBTAP00000040210/1-769 GSSVLSYFLF LKTLLAFNTL LLPPLLAFIV GVQAAFPPAP TGPVPAFTGL bmy_13161T0/1-769 GSSVLSYFLF LKTLLAFNTL LLLPLLAFIV GVQAAFPPAP SGSVPAFRGL BACU011561/1-810 GSSVLSYFLF LKTLLAFNTL LLLPLLAFIV GVQAAFPPAP SGSVPAFRGL 301 350 ENSP00000465261/1-805 ELLTGAGCFT HTVMYYGHYS NATLNQPCGS PLDGSQCTPR VGGLPYNMPL ENSTTRP00000010276/1-809 ELLTGGACFT HTVMYYGYYS NVTLNXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000040210/1-769 ELLTGGGYFT HSVMYYGYYS NATLNQPCAS PLDGSQCTPE AGSLPYSMPL bmy_13161T0/1-769 ELLTGGGRFT HTVMYYGYYS NATLNQP--- ---------- ---------- BACU011561/1-810 ELLTGGGRFT HTVMYYGYYS NATLNQPCAS PRDGGQCTPE AGGLPYNMPL 351 400 ENSP00000465261/1-805 AYLSTVGVSF FITCITLVYS MAHSFGESYR VGSTSGIHAI TVFCSWDYKV ENSTTRP00000010276/1-809 XXXXXXXXXX XXXXXXXXXX MSRSFGESYR VGSTSGVHAV TVFCSWDYKV ENSBTAP00000040210/1-769 AYLFTLGAAF FITCITLVYS MSRSFGESYR VGSTSGVHAI TVFCSWDYKV bmy_13161T0/1-769 ---------- ---------- MSRSFGESYR VGSTSGVHAI TVFCSWDYKV BACU011561/1-810 AYLFTVGVAF FITCITLVYS MSHSFGESYR VGSTSGVHAI TVFCSWDYKV 401 450 ENSP00000465261/1-805 TQKRASRLQQ DNIRTRLKEL LAEWQLRHSP RSVCGRLRQA AVLGLVWLLC ENSTTRP00000010276/1-809 TQKWASRLQH DNIRTQLKEL LAEGQLWQRP RRACGRLQQG AVLGLVWLLC ENSBTAP00000040210/1-769 TQRWATRLQH DNIRTQLKEL LAEWQSRQHR RSACGQLRRV AVLGLVWLLC bmy_13161T0/1-769 TQKWATRLQH DNIRTQLKEL LAEGQLRQRP RRACGRLWQA AVLGLVWLLC BACU011561/1-810 TQKWATRLQH DNIRTQLK-- ---------- ---------- ---------- 451 500 ENSP00000465261/1-805 LGTALGCAVA VHVFSEFMI- QSPEAAGQEA VLLVLPLVVG LLNLGAPYLC ENSTTRP00000010276/1-809 LGTTLVCALA VYTFSELVI- QSRVSAERDW ALLALPLVVC LLNLGAPYLF ENSBTAP00000040210/1-769 LGTTLGCTLA VYTFSELMI- KSPVSAEREA VLLLLPLVVC LLNLGGPYLF bmy_13161T0/1-769 LGTTLVCALA VYTFSELVIQ QSRVSAEWDG ALLALPLVVC LLNLGAPYLF BACU011561/1-810 ---------- ---------- QSRVSAERDG VLLALPLVVC LLNLGAPYLF 501 550 ENSP00000465261/1-805 RVLAALEPHD SPVLEVYVAI CRNLILKLAI LGTLCYHWLG RRVGVLQGQC ENSTTRP00000010276/1-809 RVLAVLERHD SPVLEVYVAI CRNLILKVVI LGILCYHWLG RRVGTLKDQC ENSBTAP00000040210/1-769 RILAALERHD SPVLEVYVAI CRNLILKMVT LGILCYHWLG RRVGTLKDQC bmy_13161T0/1-769 RVLAALERHD SPVLEVYVAI CRNLILKMVI LGILCYHWLG RRVGTLKDQC BACU011561/1-810 RVLATLERHD SPVLEVYVAI CR---WARGA GGGAPGHW-G LRPRLF--QC 551 600 ENSP00000465261/1-805 WEDFVGQELY RFLVMDFVLM LLDTLFGELV WRIISEKKLK RRRKPEFDIA ENSTTRP00000010276/1-809 WEDFVGQELY RLMVMDFIFT LLDTLLGELV WRLISEKRSQ RKGKPEFDIA ENSBTAP00000040210/1-769 WENFVGQELY RLMVMDFIFT LLDTLLGELV WRLFSEKQLK RKGKPEFDIA bmy_13161T0/1-769 WEDFVGQELY RLMVMDFIFT LLDTLLGELV WRLISEKRSQ RKGKPEFDIA BACU011561/1-810 WEDFVGQELY RLMVMDFIFT LLDTLLGELV WRLISEKRSQ RKGKPEFDIA 601 650 ENSP00000465261/1-805 RNVLELIYGQ TLTWLGVLFS PLLPAVQIIK LLLVFYVKKT SLLANCQAPR ENSTTRP00000010276/1-809 GNVLELIYGQ TLTWLGVLFS PLLPAMQIIK LLFLFYVKKT SLMANCQAPR ENSBTAP00000040210/1-769 GNVLELIYGQ TLTWLGVLFS PLLPAMQIIK LLLLFYIKKA SLMANCQAPR bmy_13161T0/1-769 GNVLELIYGQ TLTWLGVLFS PLLPAMQIIK LLFLFYVKKT SLMANCQAPR BACU011561/1-810 GNVLELIYGQ TLTWLGVLFS PLLPAMQIIK LLFLFYVKKT SLMANCQAPR 651 700 ENSP00000465261/1-805 RPWLASHMST VFLTLLCFPA FLGAAVFLCY AVWQVKPSST CGPFRTLDTM ENSTTRP00000010276/1-809 RPWKASHMST VFISLLCFPS FLGAAVFLCY AIWXXXXXXX XXXXXXXXXX ENSBTAP00000040210/1-769 RPWKASHMST VFISLLCFPS FLGAAVFLCY AVWQVKPSST CGPFRTLDTM bmy_13161T0/1-769 RPWKASHMST VFISLLCFPS FLGAAIFLCY AIWQVKPSSI CGPFRTLDTM BACU011561/1-810 RPWKASHMST VFILLLCFPS FLGAAIFLCY AIWQVKPSSI CGPFRTLDTM 701 750 ENSP00000465261/1-805 YEAGRVWVRH LEAAGPRVSW LPWVHRYLME NTFFVFLVSA LLLAVIYLNI ENSTTRP00000010276/1-809 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXNI ENSBTAP00000040210/1-769 YEAGKVWVRR LEKAGPRVSW LPWIHRYLVE DTFPIYLVSA LLLAVIYLNI bmy_13161T0/1-769 YEAGKVWVRH LEEAGPRVSW LPWIHRYLVE SAFPIYLASA LLLAVIYLNI BACU011561/1-810 YEAGKVWVRH LEEAGPRVSW LSWIHRYLVE SAFPIYLASA LLLAVIYLNI 751 800 ENSP00000465261/1-805 QVVRGQRKVI CLLKEQISNE GEDKIFLINK LHSIYERKER EERSRV---- ENSTTRP00000010276/1-809 QVVKGQRKVI CLLKEQLSNE GEDKIFLINK LQRIYERK-- -ERSRV---- ENSBTAP00000040210/1-769 QVVKGQRKVI CLLKEQISN- ----VF---- ---------- ---------- bmy_13161T0/1-769 QVVKGQRKVI CLLKEQLSNE GEDKIFLINK LQRIYERK-- -ERSRV---- BACU011561/1-810 QVVKGQRKVI CLLKEQLSNE GEDKIFLINK LQRIYERK-- -ERSRLLSLP 801 850 ENSP00000465261/1-805 GTTEEAAAP- ---------- ---------- ---------- ---------- ENSTTRP00000010276/1-809 GRTEEAVMP- ---------- ---------- ---------- ---------- ENSBTAP00000040210/1-769 ---------- ---------- ---------- ---------- ---------- bmy_13161T0/1-769 GRTEEAVTP- ---------- ---------- ---------- ---------- BACU011561/1-810 GQGPAAYQPL RGASPGAGLL MKQTLCGFRV ERRAPSSGPA PDGRDGPRCS 851 900 ENSP00000465261/1-805 ----PALLTD E------QDA -- ENSTTRP00000010276/1-809 ----PAVFTD D------WDA Q- ENSBTAP00000040210/1-769 ---------- ---------- -- bmy_13161T0/1-769 ----PAVFTD D------WDA Q- BACU011561/1-810 FRRCPASLCH AGQVRGVWRV MK