KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:50:17 2014 Check: 00 ..
Name: ENSP00000306760/1-670 Len: 1276 Check: 5713 Weight: 1.00
Name: ENSBTAP00000040289/1-644 Len: 1276 Check: 2069 Weight: 1.00
Name: BACU011634/1-1173 Len: 1276 Check: 4544 Weight: 1.00
Name: bmy_02240T0/1-741 Len: 1276 Check: 7843 Weight: 1.00
Name: ENSTTRP00000001485/1-670 Len: 1276 Check: 5381 Weight: 1.00
//
1 50
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 MKNGGPGSQE VSKLCLVQVL EDTCRRQDFN PNEYDLKFQR NVLDLSLQWR
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
51 100
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 FANLPNNAKL EMVPISRSRE GPENMVRIAL QLDDGSRLQD TFCSGQTLWE
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
101 150
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 LLCHFAQIRE CLDRPCEASP VCVYMRDEVT GGAALQSTTL QSLGLTGGSA
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
151 200
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 IIRFSMKPHD STGKQEPGVS WSKSPGSPTP SLLADQAASS PLFPLNSAGL
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
201 250
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 SQGDVSHQDE AARPGAGRVD GLGPKPVDAQ AKQISKEPTP APFVPFSGGG
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
251 300
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 QRLGGPSGSV RPLMSSSAKL PKSFSSPAGP SQPKKSRPGQ EPQPEPELPV
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
301 350
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 DRDPVVCHPD LEVLLQAWPA ELPDEFFEVT VDDVRRRLAQ LKSERKRLEE
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
351 400
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 APWVTKAFRD AQMKEKLQRY PKVVLRVLFP DRYILQGFFR PSETVGDLRD
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
401 450
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 FVRSHLGNPK LPFYLYNHLS AVIAPPKTIL DDHTLTLFQA NLFPAALVHF
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
451 500
ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ----------
ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ----------
BACU011634/1-1173 GPEEPTGIYL EPTLLEHTVS PSAADVLVAR SMSRAAGTPP PPPAPDPAPV
bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ----------
ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ----------
501 550
ENSP00000306760/1-670 ---------- ---------- ---------- -----MEEFR RSYSRLCRES
ENSBTAP00000040289/1-644 ---------- ---------- ---------- -----MEEFR RAYSRLCKES
BACU011634/1-1173 ELEPTAEEGA VGPPEPSPGT AQPALSGKPF LHPRDMEEFR RTYSRLCKES
bmy_02240T0/1-741 ---------- ---------- ---------- -----MEEFR RTYSRLCKES
ENSTTRP00000001485/1-670 ---------- ---------- ---------- -----MEEFR RTYSRLCKES
551 600
ENSP00000306760/1-670 GAEPQEAVLQ QLHQLPRGRL DLATQSLTVE TCRALGKLLP RETLCTELVL
ENSBTAP00000040289/1-644 GTEPQETVLQ QLHQLPQGRL DLATQSLTVD TCRALGKLLQ KESLLTELIL
BACU011634/1-1173 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELVL
bmy_02240T0/1-741 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELIL
ENSTTRP00000001485/1-670 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELVL
601 650
ENSP00000306760/1-670 SDCMLSEEGA TLLLRGLCAN TVLRFLDLKG NNLRAAGAEA LGKLLQQNKS
ENSBTAP00000040289/1-644 SDCMLSEEGA TLLLQGLCVN TAVRFLDLKG NNLRAAGAEA LAKLLRQNKS
BACU011634/1-1173 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRATGAEA LAKLLRQNKS
bmy_02240T0/1-741 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRAAGAEA LAKLLRQNKS
ENSTTRP00000001485/1-670 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRASGAEA LAKLLRQNKS
651 700
ENSP00000306760/1-670 IQSLTLEWNS LGTWDDAFAT FCGGLAANGA LQRLDLRNNQ ISHKGAEELA
ENSBTAP00000040289/1-644 IQSLTLEWNN LGTWDEAFAT FCGALAANGA LRQLDLRNNQ INHKGAEELA
BACU011634/1-1173 IQSLTLEWNS LGTWEEAFAA FCGALAANGT LRQLDLRNNQ ISHKGAEELA
bmy_02240T0/1-741 IQSLTLEWNS LGTWEEAFAA FCGALAANGT LQQLDLRNNQ ISHKGAEELA
ENSTTRP00000001485/1-670 IQSLTLEWNS LGTWEEAFAA FCGALAANGA LRQLDLRNNQ ISHKGAEELA
701 750
ENSP00000306760/1-670 LALKGNTTLQ QLDLRWNNVG LLGGRALMNC LPSNRTLWRL DLAGNNIPGD
ENSBTAP00000040289/1-644 LALKSNASLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNNIPGD
BACU011634/1-1173 LALKSNTSLQ QLDVRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD
bmy_02240T0/1-741 LALKSNTSLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD
ENSTTRP00000001485/1-670 LALKSNTSLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD
751 800
ENSP00000306760/1-670 VLRAVEQAMG HSQDRLTTFQ ENQARTHVLS KEVQHLREEK SKQFLDLMET
ENSBTAP00000040289/1-644 ILRAVEQAMD HNQDRQTVFR ESQARAQVLS KEVRHLREEK SKQFLDLMET
BACU011634/1-1173 ILRAVEQAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET
bmy_02240T0/1-741 ILRAVEQAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET
ENSTTRP00000001485/1-670 ILRAVELAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET
801 850
ENSP00000306760/1-670 IDKQREEMAK SSRASAARVG QLQEALNERH SIINALKAKL QMTEAALALS
ENSBTAP00000040289/1-644 IDRQREEMAR SSKASAARVG QLQEALNERH SIINSLKAKL QMTEAALALS
BACU011634/1-1173 IDRQREEMVR SSKASAARVG QLQEALNERH SIINALKAKL QMAEAALALS
bmy_02240T0/1-741 IDRQREEMVR SSKASAARMG QLQEALNERH SIINALKAKL QMAEAALALS
ENSTTRP00000001485/1-670 IDRQREEMVR SSKASAARVG QLQEALNERH SIINALKAKL QMAEAALALS
851 900
ENSP00000306760/1-670 EQKAQDLGEL LATAEQEQLS LSQRQAKELK LEQ------- ----------
ENSBTAP00000040289/1-644 EQKAQDLGEL LATTEQEQRS LVQRQAKEHR LEQ------- ----------
BACU011634/1-1173 EQKAQDLGEL LATAEQEQRS LAQRQAKEHR LEQ------- ----------
bmy_02240T0/1-741 EQKAQDLGEL LATAEQEQRS LAQRQAKEHR LEQQVGREGW MGRWWGVGWA
ENSTTRP00000001485/1-670 EQKAQDLGEL LATTEQEQRS LAQRQAKEHR LEQ------- ----------
901 950
ENSP00000306760/1-670 ---------- -------QEA AERESKLLRD LSAANEKNLL LQNQVDELER
ENSBTAP00000040289/1-644 ---------- -------QEA AERESKLLRD LSAANEKNLL LRNQVDELER
BACU011634/1-1173 ---------- -------QEA AERESKLLRD LSAANEKNLL LQNQVDELEQ
bmy_02240T0/1-741 GGAWWQVSSG ALSPSDPQEA AERESKLLRD LSAANEKNLL LQNQVDELER
ENSTTRP00000001485/1-670 ---------- -------QEA AERESKLRRD LSAANEKNLL LQNQVDELER
951 1000
ENSP00000306760/1-670 KFRCQQEQLF QTRQEMTSMS AELKMRAIQA EERLDMEKRR CRQSLEDSES
ENSBTAP00000040289/1-644 KVKSQQEQLF LTKTELTNTT AELKMRAIQA EERLELEKNR SRQSLEDAEH
BACU011634/1-1173 KVKSQQDQLF LTRQELTNTA AELKMWAVQA EERLELEKKR SRQSLQDAEH
bmy_02240T0/1-741 KVKSQQDQLF LTRQELTNTA AELKMRAVQA EERLELEKKR SRKSLEDAEH
ENSTTRP00000001485/1-670 KVKSQQDQLF LTRQELTNTA AELKMRAVQA EERLELEKKR SRQSLEDAEH
1001 1050
ENSP00000306760/1-670 LRIKEVEHMT RHLEESEKAM QERVQRLEAA RLSLEEELSR VKAAALSERG
ENSBTAP00000040289/1-644 LRFKEVEHMT RHLEDSERAM QERVQRLEAA RLSLEEELSR VKAAALTERS
BACU011634/1-1173 LRFKEVEHMT RHLEESERAM QERVQRLEAV RLSLEEELSR AKAAALSERS
bmy_02240T0/1-741 LRFKEVEHMT RHLEESERAM QERVQRLEAA RLSLEEELSR AKAAALSERS
ENSTTRP00000001485/1-670 LRFKEVEHMT RHLEESERAM QERVQRLEAV RLSLEEELSR AKAAALSERS
1051 1100
ENSP00000306760/1-670 QAEEELIKAK SQARLEEQQR LAHLEDKLRL LAQARDEAQG ACLQQKQVVA
ENSBTAP00000040289/1-644 QAEEELIKAK NQVRLEEELR AT-------- ------GQRA AHLSFSWAHS
BACU011634/1-1173 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQAVA
bmy_02240T0/1-741 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQAVA
ENSTTRP00000001485/1-670 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQVVA
1101 1150
ENSP00000306760/1-670 EAQTRVSQLG LQVEGLRRRL EELQQELSLK DQERVAEVSR VRVELQEQNG
ENSBTAP00000040289/1-644 STTTSHSPL- ---------- -LAWQELSNK DQEKVAEVTR VRLELQEQNG
BACU011634/1-1173 DAQARASQLD RQVEGLRRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG
bmy_02240T0/1-741 DAQARASQLD RQVEGLRRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG
ENSTTRP00000001485/1-670 DAQARASQLG RQVEGLTRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG
1151 1200
ENSP00000306760/1-670 RLQAELAAQE ALREKAAALE RQLK------ ---------- ----------
ENSBTAP00000040289/1-644 RLQAELTAQE ALKEKAAALE RQLK------ ---------- ----------
BACU011634/1-1173 RLQAELTAQE ALKEKAAALE RQLKGELSPT PAPLW----- ----------
bmy_02240T0/1-741 RLQAELTAQE ALKEKAAALE RQLKGELSPT PAPLWLLCRA FLTGSSHRRR
ENSTTRP00000001485/1-670 RLQAELTAQE ALKEKAAALE RQLK------ ---------- ----------
1201 1250
ENSP00000306760/1-670 ---------- -VMASDHREA LLDRESENAS LREKLRLREA EIARIRDEEA
ENSBTAP00000040289/1-644 ---------- -VIASDHREA LLDRESENAS LREKLRLKEA EIARIRDEEA
BACU011634/1-1173 ---------- -LLCRAFSYW VIPQEKEEAG LES------- ----------
bmy_02240T0/1-741 RRLAWRAELG LVMASDHREA LLDRESENAS LREKLRLKQA EIARIRDEEA
ENSTTRP00000001485/1-670 ---------- -VIASDHREA LLDRESENAS LREKLRLKQA EIARIRDEEA
1251 1300
ENSP00000306760/1-670 QRASFLQNAV LAYVQASPVR TLSPPK
ENSBTAP00000040289/1-644 QRASFLQNAV LAYVQGSPLR TLSPQK
BACU011634/1-1173 ---------- ---------- ------
bmy_02240T0/1-741 QRASFLQNAV LAYVQGSPLR TLSPQK
ENSTTRP00000001485/1-670 QRASFLQNAV LAYVQGSPLR TLSPQK