KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:17 2014 Check: 00 .. Name: ENSP00000306760/1-670 Len: 1276 Check: 5713 Weight: 1.00 Name: ENSBTAP00000040289/1-644 Len: 1276 Check: 2069 Weight: 1.00 Name: BACU011634/1-1173 Len: 1276 Check: 4544 Weight: 1.00 Name: bmy_02240T0/1-741 Len: 1276 Check: 7843 Weight: 1.00 Name: ENSTTRP00000001485/1-670 Len: 1276 Check: 5381 Weight: 1.00 // 1 50 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 MKNGGPGSQE VSKLCLVQVL EDTCRRQDFN PNEYDLKFQR NVLDLSLQWR bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 FANLPNNAKL EMVPISRSRE GPENMVRIAL QLDDGSRLQD TFCSGQTLWE bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 LLCHFAQIRE CLDRPCEASP VCVYMRDEVT GGAALQSTTL QSLGLTGGSA bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 IIRFSMKPHD STGKQEPGVS WSKSPGSPTP SLLADQAASS PLFPLNSAGL bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 SQGDVSHQDE AARPGAGRVD GLGPKPVDAQ AKQISKEPTP APFVPFSGGG bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 QRLGGPSGSV RPLMSSSAKL PKSFSSPAGP SQPKKSRPGQ EPQPEPELPV bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 DRDPVVCHPD LEVLLQAWPA ELPDEFFEVT VDDVRRRLAQ LKSERKRLEE bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 APWVTKAFRD AQMKEKLQRY PKVVLRVLFP DRYILQGFFR PSETVGDLRD bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 401 450 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 FVRSHLGNPK LPFYLYNHLS AVIAPPKTIL DDHTLTLFQA NLFPAALVHF bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 451 500 ENSP00000306760/1-670 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040289/1-644 ---------- ---------- ---------- ---------- ---------- BACU011634/1-1173 GPEEPTGIYL EPTLLEHTVS PSAADVLVAR SMSRAAGTPP PPPAPDPAPV bmy_02240T0/1-741 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001485/1-670 ---------- ---------- ---------- ---------- ---------- 501 550 ENSP00000306760/1-670 ---------- ---------- ---------- -----MEEFR RSYSRLCRES ENSBTAP00000040289/1-644 ---------- ---------- ---------- -----MEEFR RAYSRLCKES BACU011634/1-1173 ELEPTAEEGA VGPPEPSPGT AQPALSGKPF LHPRDMEEFR RTYSRLCKES bmy_02240T0/1-741 ---------- ---------- ---------- -----MEEFR RTYSRLCKES ENSTTRP00000001485/1-670 ---------- ---------- ---------- -----MEEFR RTYSRLCKES 551 600 ENSP00000306760/1-670 GAEPQEAVLQ QLHQLPRGRL DLATQSLTVE TCRALGKLLP RETLCTELVL ENSBTAP00000040289/1-644 GTEPQETVLQ QLHQLPQGRL DLATQSLTVD TCRALGKLLQ KESLLTELIL BACU011634/1-1173 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELVL bmy_02240T0/1-741 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELIL ENSTTRP00000001485/1-670 GAEPQETVLQ QMHQLPQGRL DLATQSLTVD TCRALGKLLQ KEALLTELVL 601 650 ENSP00000306760/1-670 SDCMLSEEGA TLLLRGLCAN TVLRFLDLKG NNLRAAGAEA LGKLLQQNKS ENSBTAP00000040289/1-644 SDCMLSEEGA TLLLQGLCVN TAVRFLDLKG NNLRAAGAEA LAKLLRQNKS BACU011634/1-1173 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRATGAEA LAKLLRQNKS bmy_02240T0/1-741 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRAAGAEA LAKLLRQNKS ENSTTRP00000001485/1-670 SDCMLSEEGA VLLLQGLCVN TIVRFLDLKG NNLRASGAEA LAKLLRQNKS 651 700 ENSP00000306760/1-670 IQSLTLEWNS LGTWDDAFAT FCGGLAANGA LQRLDLRNNQ ISHKGAEELA ENSBTAP00000040289/1-644 IQSLTLEWNN LGTWDEAFAT FCGALAANGA LRQLDLRNNQ INHKGAEELA BACU011634/1-1173 IQSLTLEWNS LGTWEEAFAA FCGALAANGT LRQLDLRNNQ ISHKGAEELA bmy_02240T0/1-741 IQSLTLEWNS LGTWEEAFAA FCGALAANGT LQQLDLRNNQ ISHKGAEELA ENSTTRP00000001485/1-670 IQSLTLEWNS LGTWEEAFAA FCGALAANGA LRQLDLRNNQ ISHKGAEELA 701 750 ENSP00000306760/1-670 LALKGNTTLQ QLDLRWNNVG LLGGRALMNC LPSNRTLWRL DLAGNNIPGD ENSBTAP00000040289/1-644 LALKSNASLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNNIPGD BACU011634/1-1173 LALKSNTSLQ QLDVRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD bmy_02240T0/1-741 LALKSNTSLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD ENSTTRP00000001485/1-670 LALKSNTSLQ QLDLRWNHIG LLGGRALVNC LPSNRTLWKL ELAGNSIPGD 751 800 ENSP00000306760/1-670 VLRAVEQAMG HSQDRLTTFQ ENQARTHVLS KEVQHLREEK SKQFLDLMET ENSBTAP00000040289/1-644 ILRAVEQAMD HNQDRQTVFR ESQARAQVLS KEVRHLREEK SKQFLDLMET BACU011634/1-1173 ILRAVEQAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET bmy_02240T0/1-741 ILRAVEQAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET ENSTTRP00000001485/1-670 ILRAVELAMD HNQDRQTAFR ESQARAHVLS KEVRHLREEK SKQFLDLMET 801 850 ENSP00000306760/1-670 IDKQREEMAK SSRASAARVG QLQEALNERH SIINALKAKL QMTEAALALS ENSBTAP00000040289/1-644 IDRQREEMAR SSKASAARVG QLQEALNERH SIINSLKAKL QMTEAALALS BACU011634/1-1173 IDRQREEMVR SSKASAARVG QLQEALNERH SIINALKAKL QMAEAALALS bmy_02240T0/1-741 IDRQREEMVR SSKASAARMG QLQEALNERH SIINALKAKL QMAEAALALS ENSTTRP00000001485/1-670 IDRQREEMVR SSKASAARVG QLQEALNERH SIINALKAKL QMAEAALALS 851 900 ENSP00000306760/1-670 EQKAQDLGEL LATAEQEQLS LSQRQAKELK LEQ------- ---------- ENSBTAP00000040289/1-644 EQKAQDLGEL LATTEQEQRS LVQRQAKEHR LEQ------- ---------- BACU011634/1-1173 EQKAQDLGEL LATAEQEQRS LAQRQAKEHR LEQ------- ---------- bmy_02240T0/1-741 EQKAQDLGEL LATAEQEQRS LAQRQAKEHR LEQQVGREGW MGRWWGVGWA ENSTTRP00000001485/1-670 EQKAQDLGEL LATTEQEQRS LAQRQAKEHR LEQ------- ---------- 901 950 ENSP00000306760/1-670 ---------- -------QEA AERESKLLRD LSAANEKNLL LQNQVDELER ENSBTAP00000040289/1-644 ---------- -------QEA AERESKLLRD LSAANEKNLL LRNQVDELER BACU011634/1-1173 ---------- -------QEA AERESKLLRD LSAANEKNLL LQNQVDELEQ bmy_02240T0/1-741 GGAWWQVSSG ALSPSDPQEA AERESKLLRD LSAANEKNLL LQNQVDELER ENSTTRP00000001485/1-670 ---------- -------QEA AERESKLRRD LSAANEKNLL LQNQVDELER 951 1000 ENSP00000306760/1-670 KFRCQQEQLF QTRQEMTSMS AELKMRAIQA EERLDMEKRR CRQSLEDSES ENSBTAP00000040289/1-644 KVKSQQEQLF LTKTELTNTT AELKMRAIQA EERLELEKNR SRQSLEDAEH BACU011634/1-1173 KVKSQQDQLF LTRQELTNTA AELKMWAVQA EERLELEKKR SRQSLQDAEH bmy_02240T0/1-741 KVKSQQDQLF LTRQELTNTA AELKMRAVQA EERLELEKKR SRKSLEDAEH ENSTTRP00000001485/1-670 KVKSQQDQLF LTRQELTNTA AELKMRAVQA EERLELEKKR SRQSLEDAEH 1001 1050 ENSP00000306760/1-670 LRIKEVEHMT RHLEESEKAM QERVQRLEAA RLSLEEELSR VKAAALSERG ENSBTAP00000040289/1-644 LRFKEVEHMT RHLEDSERAM QERVQRLEAA RLSLEEELSR VKAAALTERS BACU011634/1-1173 LRFKEVEHMT RHLEESERAM QERVQRLEAV RLSLEEELSR AKAAALSERS bmy_02240T0/1-741 LRFKEVEHMT RHLEESERAM QERVQRLEAA RLSLEEELSR AKAAALSERS ENSTTRP00000001485/1-670 LRFKEVEHMT RHLEESERAM QERVQRLEAV RLSLEEELSR AKAAALSERS 1051 1100 ENSP00000306760/1-670 QAEEELIKAK SQARLEEQQR LAHLEDKLRL LAQARDEAQG ACLQQKQVVA ENSBTAP00000040289/1-644 QAEEELIKAK NQVRLEEELR AT-------- ------GQRA AHLSFSWAHS BACU011634/1-1173 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQAVA bmy_02240T0/1-741 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQAVA ENSTTRP00000001485/1-670 QAEEELIKAK NQVRLEEQQR LAHLEEKLRL LAQARDEAQS ACLQQKQVVA 1101 1150 ENSP00000306760/1-670 EAQTRVSQLG LQVEGLRRRL EELQQELSLK DQERVAEVSR VRVELQEQNG ENSBTAP00000040289/1-644 STTTSHSPL- ---------- -LAWQELSNK DQEKVAEVTR VRLELQEQNG BACU011634/1-1173 DAQARASQLD RQVEGLRRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG bmy_02240T0/1-741 DAQARASQLD RQVEGLRRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG ENSTTRP00000001485/1-670 DAQARASQLG RQVEGLTRRL EELQQELSNK DQEKAAEVTR VRLELQEQNG 1151 1200 ENSP00000306760/1-670 RLQAELAAQE ALREKAAALE RQLK------ ---------- ---------- ENSBTAP00000040289/1-644 RLQAELTAQE ALKEKAAALE RQLK------ ---------- ---------- BACU011634/1-1173 RLQAELTAQE ALKEKAAALE RQLKGELSPT PAPLW----- ---------- bmy_02240T0/1-741 RLQAELTAQE ALKEKAAALE RQLKGELSPT PAPLWLLCRA FLTGSSHRRR ENSTTRP00000001485/1-670 RLQAELTAQE ALKEKAAALE RQLK------ ---------- ---------- 1201 1250 ENSP00000306760/1-670 ---------- -VMASDHREA LLDRESENAS LREKLRLREA EIARIRDEEA ENSBTAP00000040289/1-644 ---------- -VIASDHREA LLDRESENAS LREKLRLKEA EIARIRDEEA BACU011634/1-1173 ---------- -LLCRAFSYW VIPQEKEEAG LES------- ---------- bmy_02240T0/1-741 RRLAWRAELG LVMASDHREA LLDRESENAS LREKLRLKQA EIARIRDEEA ENSTTRP00000001485/1-670 ---------- -VIASDHREA LLDRESENAS LREKLRLKQA EIARIRDEEA 1251 1300 ENSP00000306760/1-670 QRASFLQNAV LAYVQASPVR TLSPPK ENSBTAP00000040289/1-644 QRASFLQNAV LAYVQGSPLR TLSPQK BACU011634/1-1173 ---------- ---------- ------ bmy_02240T0/1-741 QRASFLQNAV LAYVQGSPLR TLSPQK ENSTTRP00000001485/1-670 QRASFLQNAV LAYVQGSPLR TLSPQK