KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:19 2014 Check: 00 .. Name: ENSBTAP00000040308/1-191 Len: 234 Check: 5620 Weight: 1.00 Name: ENSP00000332287/1-233 Len: 234 Check: 5831 Weight: 1.00 Name: ENSTTRP00000001514/1-232 Len: 234 Check: 8536 Weight: 1.00 Name: bmy_00970T0/1-210 Len: 234 Check: 3485 Weight: 1.00 Name: BACU013380/1-201 Len: 234 Check: 7778 Weight: 1.00 // 1 50 ENSBTAP00000040308/1-191 MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWVFSIVVF GSIVNEGYLN ENSP00000332287/1-233 MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWLFSIVVF GSIVNEGYLN ENSTTRP00000001514/1-232 MEGGAYGAGK AGGAFDPYTL VRQPHTILRV VSWVFSIVVF GSIVNEGYLN bmy_00970T0/1-210 ---------- -------MPA PPPPPQ---- ---VFSIVVF GSIVNEGYLN BACU013380/1-201 ---------- ---------- ---------- ---VFSIVVF GSIVNEGYLN 51 100 ENSBTAP00000040308/1-191 SPSESEEFCI YNRNPNACGY GVTVGVLAFL TCLLYLALDV YFPQISSVKD ENSP00000332287/1-233 SASEGEEFCI YNRNPNACSY GVAVGVLAFL TCLLYLALDV YFPQISSVKD ENSTTRP00000001514/1-232 SPSESKEFCI YNRNPNACGY GVTVGVLAFL TCLLYLALDV YFPQISSVKD bmy_00970T0/1-210 SPSESEEFCI YNRNPNACGY GVTVGVLAFL TCLLYLALDV YFPQISSVKD BACU013380/1-201 SPSESEEFCI YNHNPNACGY GVTVGVLAFL TCLLYLALDV YFPQISSVKD 101 150 ENSBTAP00000040308/1-191 RKKAVLSDIG VSAFWAFLWF VGFCFLANQW QVSEPKDNPL NEGTDAARAA ENSP00000332287/1-233 RKKAVLSDIG VSAFWAFLWF VGFCYLANQW QVSKPKDNPL NEGTDAARAA ENSTTRP00000001514/1-232 RKKAVLSDIG VSAFWAFLWF VGFCYLANQW QVS--KDSLL NEGTDAARAA bmy_00970T0/1-210 RKKAVLSDIG VSAFWAFLWF VGFCYLANQW QVSKPKDNLL NEGTDAARAA BACU013380/1-201 RKKAVLSDIG VSAFWAFLWF VGFCYLANQW QVSKPKDNPL NEGTDAARAA 151 200 ENSBTAP00000040308/1-191 IAFSFFSIFT WSLTAALAVR RFK----DLT FQEEYNTLFP ASAQP----- ENSP00000332287/1-233 IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL FSQDYMDPSQ DSSMPYAPYV ENSTTRP00000001514/1-232 IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL FSQDYMDPSQ DSSMPYAPYV bmy_00970T0/1-210 IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL FSQDYMDPSQ DSSMPYAPYV BACU013380/1-201 IAFSFFSIFT WAGQAVLAFQ RYQIGADSAL FSQDYMDPSQ DSSMPYAPYV 201 250 ENSBTAP00000040308/1-191 ---------- ---------- ---------- ---- ENSP00000332287/1-233 EP-TGPDPAG MGGTYQQPAN TFDTEPQGYQ SQGY ENSTTRP00000001514/1-232 EPSTGPDTAG MGGTYQQPAS AFEPEPQGYQ SQGY bmy_00970T0/1-210 EPSTGPDPAG MGGTYQQPAS TFEPEPQGYQ SQGY BACU013380/1-201 EPSTGPDPAG MGGTYQQPAS AFEPEPQGYQ SQGY