KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:20 2014 Check: 00 .. Name: ENSP00000332488/1-684 Len: 696 Check: 7036 Weight: 1.00 Name: ENSBTAP00000040321/1-690 Len: 696 Check: 5300 Weight: 1.00 Name: bmy_10252T0/1-668 Len: 696 Check: 4714 Weight: 1.00 Name: BACU006152/1-637 Len: 696 Check: 1400 Weight: 1.00 // 1 50 ENSP00000332488/1-684 MACLGFLLPV GFLLLI-STV AGGKYGVAHV VSENWSKDYC ILFSSDYITL ENSBTAP00000040321/1-690 MACLGFLLFF LLLFLLASTT AQGEYGVVHV VSDNWSKDYC ILFRSDYVTL bmy_10252T0/1-668 ---------- ---------M ARGEYAVVHV VSDNWSKDYC VLFRSDYVTL BACU006152/1-637 ---------- ---------M ARGEYAVVHV VSDNWSKDYC VLFRSDYVTL 51 100 ENSP00000332488/1-684 PRDLHHAPLL PLYDGTKAPW CPGEDSPHQA QL-RSPSQRP LRQTTAMVMR ENSBTAP00000040321/1-690 PRDLQHAPLL PLHDGTGASW CPGQDSSHQA HPDGSASQRP LHRTTAMVMR bmy_10252T0/1-668 PRDLHHAPLL PLHDGTQAPW CPGEDSSHQA HP-GSPSQRP LRQTTAVVVR BACU006152/1-637 PRDLHHAPLL PLHDGTQAPW CPGQGSSHQA HP-GSRSQRP LRLTTAMVVR 101 150 ENSP00000332488/1-684 GNCSFHTKGW LAQGQGAHGL LIVSRVSDQQ CSDTTLAPQD PRQPLADLTI ENSBTAP00000040321/1-690 GNCSFYDKGW LAQGRGAHGL LIVSRVSDQQ CSDITPAAQN PHKPLPDLTI bmy_10252T0/1-668 GNCSFYAKGW LAQARGAHGL LIVSQVSGQQ CSDTTPATQD RHKPLPDLTI BACU006152/1-637 GNCSFYAKGW LAQARGAHGL LIVSQVSGQQ CSDTTPATQD RHKPLPHLTI 151 200 ENSP00000332488/1-684 PVAMLHYADM LDILSHTRGE AVVRVAMYAP PEPIIDYNML VIFILAVGTV ENSBTAP00000040321/1-690 PVAVLRYTDM LDILSHTHGG NRVHVALYAP PEPILDYNMV VIFLLAVGTV bmy_10252T0/1-668 PVAVLRYTDM LDILSYTHGG ARVHVALYAP PEPILDYNVV VIFILAVGTV BACU006152/1-637 PVAVLCYTDM LDILSYTHGG AGVRVALYAP PEPILDYNVV VIFILAVGTV 201 250 ENSP00000332488/1-684 AAGGYWAGLT EANRLQRRRA RRGGGSGGHH QLQEAAAAEG AQKEDNEDIP ENSBTAP00000040321/1-690 AVGGYWAGVT EADRLQRRRA RGGGGPGGHP P-QRALAARR GPEEDDEDSP bmy_10252T0/1-668 AVGGYWAGVT EADWVQRRLA QGGGGPGGHN Q-QEAVAAQQ GHEE--EDAT BACU006152/1-637 AVGGYWAGVT EADRVQRRLA QGGGGPG--- ---------- ---------- 251 300 ENSP00000332488/1-684 VDFTPAMTGV VVTLSCSLML LLYFFYDHFV YVTIGIFGLG AGIGLYSCLS ENSBTAP00000040321/1-690 VDFTPAMTGA VVTMSCSIML LLYFFYDCFV YIMIAIFGLG AGTGLYSCLV bmy_10252T0/1-668 VDFTPAMTGA VVTMSSSIML LLYFFYDCFV YVMIAIFGLG ASTGLYSCLV BACU006152/1-637 ---------- VVTMSSSIML LLYLFYDCFV YVMIAIFGLG ASTGLYSCLV 301 350 ENSP00000332488/1-684 PLVCRLSLRQ YQRPPHSLWA SLPLP-LLLL ASLCATVIIF WVAYRNEDRW ENSBTAP00000040321/1-690 PVVRHLPVWQ DQWLLPGRRA CLQLP-LLLL AGLCLVVTVL WVAYRNEDRW bmy_10252T0/1-668 PVVHHLPLQQ YRWFLPGRRA CLQLP-LLLL AGLCMVVTVL WVAYRNEDRW BACU006152/1-637 PVVHHLPLQQ YWWPLPGRRA CLQLPLLLLL AGLCMVVTVL WVAYRNEDRW 351 400 ENSP00000332488/1-684 AWLLQDTLGI SYCLFVLHRV RLPTLKNCSS FLLALLAFDV FFVFVTPFFT ENSBTAP00000040321/1-690 AWLLQDTLGV AYCLFVLRRM RLPTLKSCAS FLLALLVFDV FFVFITPLLT bmy_10252T0/1-668 AWLLQDMLGV AYCLFVLRRV RLPTLKSCAS FLLALLAFDV FFVFVTPLLT BACU006152/1-637 AWLLQDMLGV AYCLFVLRRV RLPTLKSCAS FLLALLAFDV FFVFVTPLLT 401 450 ENSP00000332488/1-684 KTGESIMAQV ALGPAESSSH ERLPMVLKVP RLRVSALTLC SQPFSILGFG ENSBTAP00000040321/1-690 RTGESIMVGV ASGPADSLSH ERLPMVLKVP RLSFSALTLC DQPFSILGFG bmy_10252T0/1-668 RTGESIMVEV ASGPADSLSH ERLPMVLKVP RLRFSALTLC DQPFSILGFG BACU006152/1-637 RTGESIMVEV ASGPADSLSH ERLPMVLKVP QLSFSALTLC DEPFSILGFG 451 500 ENSP00000332488/1-684 DIVVPGFLVA YCCRFDVQVC SRQIYFVACT VAYAVGLLVT FMAMVLMQMG ENSBTAP00000040321/1-690 DIVVPGFLVA YCHRFDVQIH SRQVYFVACT AAYAVGLLVT FFAMALMQMG bmy_10252T0/1-668 DIVVPGFLVA YCHRFDVHIC SRQVYFVACT VAYAVGLLVT FVAMALMQMG BACU006152/1-637 DIVVPGFLVA YCHRFDVHIR SRQVYFVACT VAYAVGLLVT FVAMALMQMG 501 550 ENSP00000332488/1-684 QPALLYLVSS TLLTSLAVAA CRQELSLFWT GQGRAK---- -MCGLGCAPS ENSBTAP00000040321/1-690 QPALLYLVSS TLLTSLAVAA CRQELTLFWT GQVRGKALTR PVPGLCGAPS bmy_10252T0/1-668 QPALLYLVSS TLLTSLAVAA CRQELTLFWT GQGRVKTPAR LVPGLCGAPS BACU006152/1-637 QPTLLYLVSS TLLTSLAVAA CRQELTLFWT GQGTAKTPAR PVPGLCGAPS 551 600 ENSP00000332488/1-684 AGSRQKQEGA ADAHTASTLE RGT-SRGAGD LDSNPGEDTT EIVTISENEA ENSBTAP00000040321/1-690 VGSEQKQEHA ADIHRAFELE GATISTLARD LDSSLGEGTA ETVTISEDGA bmy_10252T0/1-668 VGFDQKQEHA ADIHRASEFE GAT-EHLAGN LDSDLGKDTA EIVTISEDEA BACU006152/1-637 VGLDQKQEHA ADVHRASELE GAT-EHLAGN LDGDLGKDTA EIVTISEEEA 601 650 ENSP00000332488/1-684 TNPEDRSDSS EGWSDAHLDP NELPFIPPGA SEELMPLMPM AMLIPLMPLM ENSBTAP00000040321/1-690 ASPEGHSDSS EGWSDANLEP DDLSSTPSGV SEELLPLMPM AMLI---PLR bmy_10252T0/1-668 TSPEGHSDSS EGWSDATLEP DELPCTHPGT SEELMPLMPL AMLTPLMPLM BACU006152/1-637 TSPEGHSDSS EGWSDATLEP DELPCTPPGA SEELMPLMPP ATLTPLMPLM 651 700 ENSP00000332488/1-684 PPPSELGHVH AQA--QAHET GLPWAGLHKR KGLK-VRKSM STQAPL ENSBTAP00000040321/1-690 PPPSELGHIQ AQAQAQAHEA NLSWTGFHKR KGLK-VKKSM LTQDPL bmy_10252T0/1-668 PPPSELGHTH TQA--QAHDA GLPWTGLHKK KGLK-VKKSM STQAPL BACU006152/1-637 PPPSELGHTH AQA--QAHDA GLPWTGLHDK KGPKDCKKAA TTE---