KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:50:28 2014  Check: 00 ..

 Name: BACU016117/1-152          Len:    172  Check:  5421  Weight:  1.00
 Name: bmy_11685T0/1-157         Len:    172  Check:  4618  Weight:  1.00
 Name: ENSP00000224073/1-148     Len:    172  Check:  8380  Weight:  1.00
 Name: ENSBTAP00000040410/1-148  Len:    172  Check:  8380  Weight:  1.00
 Name: ENSTTRP00000002502/1-148  Len:    172  Check:  8162  Weight:  1.00

//


                          1                                                   50
BACU016117/1-152          MSHSHVSEEP DW-----LRK ------ARPG PHLTFLPAFV GECSREAILA 
bmy_11685T0/1-157         ------MLDT DYKSGMHMQK CDTNMQKKPI PKCE-----D NAKSKQAILA 
ENSP00000224073/1-148     ------MAES DWDTVTVLRK ------KGPT A--------A QAKSKQAILA 
ENSBTAP00000040410/1-148  ------MAES DWDTVTVLRK ------KGPT A--------A QAKSKQAILA 
ENSTTRP00000002502/1-148  ------MAES DWDTVTVLRK ------KGPT A--------A QAKSKQAILA 


                          51                                                 100
BACU016117/1-152          AQRRGEDVET SKKWAAGQNK QHSITKNTAK LDRETEELHH DRVTLEVGKV 
bmy_11685T0/1-157         AQRRGEDVET SKKWAAGQNK QHLITKNTAK LDRETEELHH DRVTLEVGKV 
ENSP00000224073/1-148     AQRRGEDVET SKKWAAGQNK QHSITKNTAK LDRETEELHH DRVTLEVGKV 
ENSBTAP00000040410/1-148  AQRRGEDVET SKKWAAGQNK QHSITKNTAK LDRETEELHH DRVTLEVGKV 
ENSTTRP00000002502/1-148  AQRRGEDVET SKKWAAGQNK QHSITKNTAK LDRETEELHH DRVTLEVGKV 


                          101                                                150
BACU016117/1-152          IQQGRQSKGL TQKDLATKIN EKPQVIADYE SGRAIPNNQV LGKIERAIGE 
bmy_11685T0/1-157         IQQGRQSKGL TQKEQATKIN EKPQVIADYE SGRAIPNNQV LGKIERAIA- 
ENSP00000224073/1-148     IQQGRQSKGL TQKDLATKIN EKPQVIADYE SGRAIPNNQV LGKIERAIG- 
ENSBTAP00000040410/1-148  IQQGRQSKGL TQKDLATKIN EKPQVIADYE SGRAIPNNQV LGKIERAIG- 
ENSTTRP00000002502/1-148  IQQGRQGKGL TQKDLATKIN EKPQVIADYE SGRAIPNNQV LGKIERAIG- 


                          151                                                200
BACU016117/1-152          CPAILQWVSA AAA------- -- 
bmy_11685T0/1-157         ---LKLWGKA TGKPIVKGQR AK 
ENSP00000224073/1-148     ---LKLRGKD IGKPIEKGPR AK 
ENSBTAP00000040410/1-148  ---LKLRGKD IGKPIEKGPR AK 
ENSTTRP00000002502/1-148  ---LKLRGRD IGKPIEKGPR AK