KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:50:31 2014  Check: 00 ..

 Name: ENSP00000361110/1-347     Len:    347  Check:  3377  Weight:  1.00
 Name: ENSBTAP00000040428/1-335  Len:    347  Check:  7449  Weight:  1.00
 Name: bmy_05384T0/1-347         Len:    347  Check:  3937  Weight:  1.00
 Name: ENSTTRP00000013692/1-346  Len:    347  Check:  4988  Weight:  1.00

//


                          1                                                   50
ENSP00000361110/1-347     MHRRRLALGL GFCLLAGTSL SVLWVYLENW LPVSYVPYYL PCPEIFNMKL 
ENSBTAP00000040428/1-335  MHCLRLALGL GFCLLLGITL CSLWMYVENW LLVSYIPYYL PCPEIFNMKL 
bmy_05384T0/1-347         MHCPRLALGL GFCLLVGMAL CSLWVYAENW LSVSYVPYYL PCPEIFNMKL 
ENSTTRP00000013692/1-346  MHCPRLALGL GFCLLVGMAL CSLWVYVENW LPVSYVPYYL PCPEIFNMKL 


                          51                                                 100
ENSP00000361110/1-347     HYKREKPLQP VVWSQYPQPK LLEHRPTQLL TLTPWLAPIV SEGTFNPELL 
ENSBTAP00000040428/1-335  QYE-EEPSQP VAQSQYPQPK LLEQKPTELL TLTPWLAPIV SEGTFNAELL 
bmy_05384T0/1-347         QYKGEKPSQP VTPSQYPQPK LLEQKPTELL TLTPWLAPIV SEGTFDPELL 
ENSTTRP00000013692/1-346  QYKGEKPFQP VTPSQYPQPK LLKQKPTEFL TLTPWLAPIV SEGTFEPELL 


                          101                                                150
ENSP00000361110/1-347     QHIYQPLNLT IGVTVFAVGK YTHFIQSFLE SAEEFFMRGY RVHYYIFTDN 
ENSBTAP00000040428/1-335  HHIYQPLNLT IGLTAFAVGK YTRFVQHFLE SAERFFMQGY RVHYYIFTHD 
bmy_05384T0/1-347         HRIYQPLNLT IGVTVFAVGK YTQFVQHFLE SAEQFFMQGF RVHYYVFTND 
ENSTTRP00000013692/1-346  RHIYQPLNLT VGVTVFAVGK YTQFVQRFLE SAEQFFMQGF RVHYYVFTND 


                          151                                                200
ENSP00000361110/1-347     PAAVPGVPLG PHRLLSSIPI QGHSHWEETS MRRMETISQH IAKRAHREVD 
ENSBTAP00000040428/1-335  PQAIPQVPLG PGRRLSVIPV PGPSQWEEAS MRRMEAISVH IAKRAHREVD 
bmy_05384T0/1-347         PTAIPRVRLG SGRLVSITPI QGHSRWEEIS TRRMETISQH IAERVHREID 
ENSTTRP00000013692/1-346  PTAVPRVRLG SGRLVSTIPI LRHSRWEEIS TRRMQSISQH IAERAHREVD 


                          201                                                250
ENSP00000361110/1-347     YLFCLDVDMV FRNPWGPETL GDLVAAIHPS YYAVPRQQFP YERRRVSTAF 
ENSBTAP00000040428/1-335  YLFCLDVDMA FRNPWGPETL GDLVAAIHPD YFTVPRHQFP YERRPVSTAF 
bmy_05384T0/1-347         YLFCLDVDMV FRNPWGPETL GDLVAAIHPG YFAVPRQQFP YERRPLSTAF 
ENSTTRP00000013692/1-346  YLFCLNVDMV FRNPWGPETL GDLVAAVHPG YFAVPRQQFP YERRP-STAF 


                          251                                                300
ENSP00000361110/1-347     VADSEGDFYY GGAVFGGQVA RVYEFTRGCH MAILADKANG IMAAWREESH 
ENSBTAP00000040428/1-335  VADGEGDFYY GRAVFG---- -------GCH MGILADKANG IMAACQEESH 
bmy_05384T0/1-347         VADGEGDFYY GGAVFGGRVA RVYEFTRGCH MGILADKANG IMAAWQEESH 
ENSTTRP00000013692/1-346  VADGEGNFYY GGAVFGGRVA EVYEFTRGCH MGILADKANG IMAAWQEESH 


                          301                                                350
ENSP00000361110/1-347     LNRHFISNKP SKVLSPEYLW DDRKPQPPSL KLIRFSTLDK DISCLRS 
ENSBTAP00000040428/1-335  LNRRFLSHKP SKVLSPEYLW DDRKPQPPSL KLIRFSTLNK DTARLRS 
bmy_05384T0/1-347         LNRRFISHKP SKVLSPEYLW DDRKPQPPSL KLIRFSTLDK DTDWLRS 
ENSTTRP00000013692/1-346  LNRRFISHKP SKVLSPEYLW DDRKPQPPSL KLIRFSTLDK DTDWLRS