KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:32 2014 Check: 00 .. Name: bmy_10535T0/1-196 Len: 375 Check: 2887 Weight: 1.00 Name: ENSP00000347586/1-296 Len: 375 Check: 3084 Weight: 1.00 Name: ENSTTRP00000000468/1-296 Len: 375 Check: 8677 Weight: 1.00 Name: ENSBTAP00000040454/1-294 Len: 375 Check: 4272 Weight: 1.00 Name: BACU013097/1-326 Len: 375 Check: 7659 Weight: 1.00 // 1 50 bmy_10535T0/1-196 ---------- ---------- ---------- ---------- ---------- ENSP00000347586/1-296 MGCRHSRLSS CKPPKKKRQE PEPEQPPRPE PHELGPLNGD TAITVQLCAS ENSTTRP00000000468/1-296 MGCGDSRLSC CKPPKKXXXX XXXXXXXXXX XXXXXXXXXX XXTTVHLCTS ENSBTAP00000040454/1-294 MGCGHSRLSC CKPPKKRRQ- -RPDQPPKPE PQELGPLNGD TATTDHVCAS BACU013097/1-326 MGCGHSRLSC CKPPKKRCQ- -GPDQPPKPE LQELGPLNGD TATAAHLCAS 51 100 bmy_10535T0/1-196 ---------- ---------- ---------- ---------- ---------- ENSP00000347586/1-296 EEAERHQKDI TRILQQHEEE KKKWAQQVEK ERELELRDRL DEQQRVLEGK ENSTTRP00000000468/1-296 EEAGQHQKAL TRILQQHEED KKKWAQKVEK ERELELGEKL NEQRRVLEGE ENSBTAP00000040454/1-294 EEAEQHQKAI TRILQQHEED KKKWAQQVEK ERELELGEKL NEQRKVLEGE BACU013097/1-326 EEAEQHQKSV TRILQQHEED KKKWAQKVEK ERELELGEKL NEQRRVLEAE 101 150 bmy_10535T0/1-196 ---------- ---------- ---------- ---------- -------MKR ENSP00000347586/1-296 NEEALQVLRA SYEQEKEALT HSFREASSTQ QETIDRLTSQ LEAFQAKMKR ENSTTRP00000000468/1-296 HAEALRVLQA SHEQDKEALT RSFQEAKAAL QETTDRLTAQ LEAFQAKVKR ENSBTAP00000040454/1-294 HAEALRVLQA SYEQDKEALT HSFQEAKAAL QETIDRLTAQ IEAFQAKMKR BACU013097/1-326 HAEALRVLQA SHEQDKEALT HSFQEAKAAL QETTDRLTAQ REAFQAKMKR 151 200 bmy_10535T0/1-196 VEESILSQDY KKHIQEYGSP SXFWEQELES LHFVIEMKNE RIHELDKRLI ENSP00000347586/1-296 VEESILSRNY KKHIQDYGSP SQFWEQELES LHFVIEMKNE RIHELDRRLI ENSTTRP00000000468/1-296 VEESILSQDY KKHIQEYGSP SQLWEQELES LHFVIEMKNE RIHELDKRLI ENSBTAP00000040454/1-294 AEESILSRDY KKHIQEHGSL SQFWEQELES LHFVIEMKNE RIHELDKRLI BACU013097/1-326 VEESILSQDY KKHIQEYGSP SQFWEQELES LHFVIEMKNE RIHELDKRLI 201 250 bmy_10535T0/1-196 LMETV----- ---------- ---------- -------KEK SLLLEEKITT ENSP00000347586/1-296 LMETV----- ---------- ---------- -------KEK NLILEEKITT ENSTTRP00000000468/1-296 LMETV----- ---------- ---------- -------KEK NLLLEEKITT ENSBTAP00000040454/1-294 LMETV----- ---------- ---------- -------KEK NLLLEEKITT BACU013097/1-326 LMETVVRGWQ RLVGDGGGGQ LMLLLSGHFL CQVCPGKKEK NLLLEEKITT 251 300 bmy_10535T0/1-196 LQQENEDLHA RGRNQTAVSR WRPRGAVPRR QPRALSVSTG SSLRTCFSPE ENSP00000347586/1-296 LQQENEDLHV RSRNQVVLSR QLSEDLLLTR E----ALEKE VQLRRQLQQE ENSTTRP00000000468/1-296 LQQENEDLHA RGRNQMAVSR QLSEDLLLAR E----ALEKE SQLCQQLQQE ENSBTAP00000040454/1-294 LQQENEDLHA RGRNQMVVSR QLSEDLLLAR E----ALEKE SQSRRQLQQE BACU013097/1-326 LQQENEDLHA RGRNQVAVSR QLSEDLLLAR E----ALEKE SQLRRQLQQE 301 350 bmy_10535T0/1-196 RPWRRSRSYA GSSSRRRRSC CTGSSGPTPP PPSRWPLSPP LRSPSSPHRA ENSP00000347586/1-296 KEELLYRVLG ANAS------ ---------- --PAFPLAP- ---------- ENSTTRP00000000468/1-296 KEQLLYRVLG ADAS------ ---------- --PAFPLAS- ---------- ENSBTAP00000040454/1-294 KEELLYRVLG ADAA------ ---------- --PAFPLAS- ---------- BACU013097/1-326 KEELLYRVLG ADAS------ ---------- --PAFPLAS- ---------- 351 400 bmy_10535T0/1-196 WTAGMLWSQL SLEDLAEKTA GASCP ENSP00000347586/1-296 ---------- ----VTPTEV SFLAT ENSTTRP00000000468/1-296 ---------- ----LTPTEV SYLAT ENSBTAP00000040454/1-294 ---------- ----VTPTEV SFLAT BACU013097/1-326 ---------- ----LTPTEV SFLAT