KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:33 2014 Check: 00 .. Name: ENSBTAP00000040462/1-999 Len: 1002 Check: 7160 Weight: 1.00 Name: ENSP00000420608/1-993 Len: 1002 Check: 7363 Weight: 1.00 Name: bmy_13302T0/1-920 Len: 1002 Check: 8430 Weight: 1.00 Name: ENSTTRP00000013467/1-992 Len: 1002 Check: 330 Weight: 1.00 // 1 50 ENSBTAP00000040462/1-999 ---MAAASVS RLWLWAALLV PAAAVYEDQV GKFDCQHLST GKTNFVLVGF ENSP00000420608/1-993 ---MAAEWAS RFWLWATLLI PAAAVYEDQV GKFDWRQQYV GKVKFASLEF bmy_13302T0/1-920 -MAAAAAAAS RFWLWAALLI PAAAVYEDQV GKFDWRQQYV GKLKFASLEF ENSTTRP00000013467/1-992 MAAVAAAVAS GIWLWAVLLI PAAAVYEDQV GKFDWRQQYV GKLKFASLEF 51 100 ENSBTAP00000040462/1-999 RPGPLLATLL VHPKTDVIAA LNSRTGEILW RHVDKGTAEG VVDAMLLYGQ ENSP00000420608/1-993 SPGS--KKLV VATEKNVIAA LNSRTGEILW RHVDKGTAEG AVDAMLLHGQ bmy_13302T0/1-920 SPGS--KKLV VATEKNVIAA LNSRTGEILW RHVDKGTVEG AVDAMLLCGQ ENSTTRP00000013467/1-992 SPGS--KKLV VATEKNVIAA LNSRTGEILW RHVDKGTAXX XXXXXXXXXX 101 150 ENSBTAP00000040462/1-999 DAITVSNGGR IMRSWETNIG GLNWEVTLDS RSLQALGLVG LQEAVRHVAV ENSP00000420608/1-993 DVITVSNGGR IMRSWETNIG GLNWEITLDS GSFQALGLVG LQESVRYIAV bmy_13302T0/1-920 DAITVSNGGR IMRSWETNIG GLNWEITLDS GSFQALGLVG LQESVRYIAV ENSTTRP00000013467/1-992 XAITVSNGGR IMRSWETNIG GLNWEITLDS GSFQALGLVG LQESVRYIAV 151 200 ENSBTAP00000040462/1-999 LKKTTLALLH LSSGHLKWVE HLPESDSIHY QMVYSYGSGV VWALGVVPFS ENSP00000420608/1-993 LKKTTLALHH LSSGHLKWVE HLPESDSIHY QMVYSYGSGV VWALGVVPFS bmy_13302T0/1-920 LKKTTLALHH LSSGHLKWVE HLPESDSIHY QMVYSYGSGV VWALGVVPFS ENSTTRP00000013467/1-992 LKKTTLALHH LSSGHLKWVE HLPESDSIHY QMVYSYGSGV VWALGVVPFS 201 250 ENSBTAP00000040462/1-999 HVNIVKFNVE DGEIVQQVRV STPWLRSLTG ACGVVDEAVL VCPDPSSRSL ENSP00000420608/1-993 HVNIVKFNVE DGEIVQQVRV STPWLQHLSG ACGVVDEAVL VCPDPSSRSL bmy_13302T0/1-920 HVNIVKFNVE DGEIVQ---- ---------- ---------- ---------- ENSTTRP00000013467/1-992 HVNIVKFNVE DGEIVQQVRV STPWLQSLTR ACGVVDEAVL VCPDPSSRSL 251 300 ENSBTAP00000040462/1-999 QTLALETEWE LRQIPLQSLD LEFASGFQPR VLPTQPSPVG PSRAQFFLQL ENSP00000420608/1-993 QTLALETEWE LRQIPLQSLD LEFGSGFQPR VLPTQPNPVD ASRAQFFLHL bmy_13302T0/1-920 ---------- ------QSLD LEFASEFQAR VLPTQPNPVD PTRAQFFLQL ENSTTRP00000013467/1-992 QTLALETEWE LRQIPLQSLD LEFASEFQPR VLPTQPNPVD PTRPQFFLQL 301 350 ENSBTAP00000040462/1-999 SPSHYALLHY RHGALDLLKN FPQAALVSFA TTGEKTVAAV MTCRNEAQKP ENSP00000420608/1-993 SPSHYALLQY HYGTLSLLKN FPQTALVSFA TTGEKTVAAV MACRNEVQKS bmy_13302T0/1-920 SPSHYALLHY HHGVLSLLKN FPQTALVSFA TTGEKTVAAV MTCRNEAQKP ENSTTRP00000013467/1-992 SPSHYALLHY HHGVLSLLKN FPQTALVSFA TTGEKTVAAV MTCRNEAQKP 351 400 ENSBTAP00000040462/1-999 SVSEDGSPGS FSEKPGPQDS LACFNQTYTI NLYLVETGRR LLDTAITFSL ENSP00000420608/1-993 SSSEDGSMGS FSEKSSSKDS LACFNQTYTI NLYLVETGRR LLDTTITFSL bmy_13302T0/1-920 SSSEDGSTGS FSEKSGPQDS LACFNQTYTI NLYLMETGRR LLDTTITFSL ENSTTRP00000013467/1-992 SSSEDGSAGS -SEKSXXXDS LACFNQTYTI NLYLMETGRR LLDTTITFSL 401 450 ENSBTAP00000040462/1-999 EQNGTRPERL YIQVFLKKDD SVGYRALVQT EDHLLLFLQQ LAGRVVLWSR ENSP00000420608/1-993 EQSGTRPERL YIQVFLKKDD SVGYRALVQT EDHLLLFLQQ LAGKVVLWSR bmy_13302T0/1-920 EQNGTRPERM YIQVFLKKDD SVGYRALVQT EDHLLLFLQQ LAGRVVLWSR ENSTTRP00000013467/1-992 EQNGTRPERM YIQVFLKKDD SVGYRALVQT EDHLLLFLQQ LAGRVVLWSR 451 500 ENSBTAP00000040462/1-999 EESLAEVVCL EMVDLPLTGA QAELEGEFGK KAVLSDYGLL GMFLKRLSSQ ENSP00000420608/1-993 EESLAEVVCL EMVDLPLTGA QAELEGEFGK KAD----GLL GMFLKRLSSQ bmy_13302T0/1-920 EESLAEAVCL EMVDLPLTGA QAELEGEFGK KAD----GLL GMFLKRLSSQ ENSTTRP00000013467/1-992 EESLAEVVCL QMVDLPLTGA QAELEGEFGK KAD----GLL GMFLKRLSSQ 501 550 ENSBTAP00000040462/1-999 LILLQAWTSH LWKVFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVMVTA ENSP00000420608/1-993 LILLQAWTSH LWKMFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVMVTA bmy_13302T0/1-920 LILLQAWTSH LWKMFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVMVTA ENSTTRP00000013467/1-992 LILLQAWTSH LWKMFYDARK PRSQIKNEIN IDTLARDEFN LQKMMVMVTA 551 600 ENSBTAP00000040462/1-999 SGKLFGIESS SGTILWKQYL PNVKPDSSFE LTVQRTTAHF PHPPQCTLLL ENSP00000420608/1-993 SGKLFGIESS SGTILWKQYL PNVKPDSSFK LMVQRTTAHF PHPPQCTLLV bmy_13302T0/1-920 SGKLFGIESS SGTILWKQYL PSVKPDSSFK LMVQRTTAHF PHPPQCTLLV ENSTTRP00000013467/1-992 SGKLFGIESS SGTILWKQYL PSVKPDSSFK LMVQRTTAHF PHPPQCTLLV 601 650 ENSBTAP00000040462/1-999 KDKETGMSSL YVFNPIFGKW SQVAPPVLKR PVLQSLLLPI MDQDYAKVLL ENSP00000420608/1-993 KDKESGMSSL YVFNPIFGKW SQVAPPVLKR PILQSLLLPV MDQDYAKVLL bmy_13302T0/1-920 KDKETGMSSL YVFNPIFGKW SQVAPPVLKR PILQSLLLPI MDQDYAKVLL ENSTTRP00000013467/1-992 KDKETGMSSL YVFNPIFGKW SQVAPPVLKR PILQSLLLPI MDQDYAKVLL 651 700 ENSBTAP00000040462/1-999 LIDDEYKVTA FPATRNVLRQ LHELAPSIFF YLVDADQGRL CGYRLRKDLT ENSP00000420608/1-993 LIDDEYKVTA FPATRNVLRQ LHELAPSIFF YLVDAEQGRL CGYRLRKDLT bmy_13302T0/1-920 LIDDEYKVTA FPATRNVLRQ LHELAPSIFF YLVDAEQGRL CGYRLRKDLT ENSTTRP00000013467/1-992 LIDDEYKVTA FPATRNVLRQ LHELAPSIFF YLVDAEQGRL CGYRLRKDLT 701 750 ENSBTAP00000040462/1-999 TELSWELTIP PEVQRIVQVK GKRSSEHVHS QGRVMGDRSV LYKSLNPNLL ENSP00000420608/1-993 TELSWELTIP PEVQRIVKVK GKRSSEHVHS QGRVMGDRSV LYKSLNPNLL bmy_13302T0/1-920 TELSWELTIP PEVQRIVQ-- ---------- ---------- ---SLNPNLL ENSTTRP00000013467/1-992 TELSWELTIP PEVQRIVQVK GKRSSEHVHS QGRVMGDRSV LYKSLNPNLL 751 800 ENSBTAP00000040462/1-999 AVVTESTDVH HERTFIGVFL VDGVTGRIVH SSVQRKAKGP VHIVHAENWV ENSP00000420608/1-993 AVVTESTDAH HERTFIGIFL IDGVTGRIIH SSVQKKAKGP VHIVHSENWV bmy_13302T0/1-920 AVVTESTDVH HERTFIGIFL VDGVTGRIIH SSVQRKAKGP VHIVHAENWV ENSTTRP00000013467/1-992 AVVTESTDVH HERTFIGTFL VDGVTGRIIH SSVQRKAKGP VHIVHSENWV 801 850 ENSBTAP00000040462/1-999 AYQYWNTKAR RNEFTALELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP ENSP00000420608/1-993 VYQYWNTKAR RNEFTVLELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP bmy_13302T0/1-920 VYQYWNTKAR RNEFTALELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP ENSTTRP00000013467/1-992 VYQYWNTKAR RNEFTALELY EGTEQYNATA FSSLDRPQLP QVLQQSYIFP 851 900 ENSBTAP00000040462/1-999 SAISAMEATI TERGITSRHL LVGLPSGAIL SLPKALLDPR RPEIPTEQSR ENSP00000420608/1-993 SSISAMEATI TERGITSRHL LIGLPSGAIL SLPKALLDPR RPEIPTEQSR bmy_13302T0/1-920 SAISAMEATI TERGITSRHL LIGLPSGAIL SLPKALLDPR RPEIPTEQSR ENSTTRP00000013467/1-992 SAISAMEATI TERGITSRHL LIGLSRAI-- -FPSKALDPR RPEIPTEQSR 901 950 ENSBTAP00000040462/1-999 EENLIPYSPD VQIHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD ENSP00000420608/1-993 EENLIPYSPD VQIHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD bmy_13302T0/1-920 EENLIPYSPD VQIHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD ENSTTRP00000013467/1-992 EENLIPYSPD VQIHAERFIN YNQTVSRMRG IYTAPSGLES TCLVVAYGLD 951 1000 ENSBTAP00000040462/1-999 IYQTRVYPSK QFDVLKDDYD YVLISSVLFG LVFATMITKR LAQVKLLNRA ENSP00000420608/1-993 IYQTRVYPSK QFDVLKDDYD YVLISSVLFG LVFATMITKR LAQVKLLNRA bmy_13302T0/1-920 IYQTRVYPSK QFDVLKDDYD YVLISSVLFG LVFATMITKR LAQVKLLNRA ENSTTRP00000013467/1-992 IYQTRVYPSK QFDVLKDDYD YVLISSVLFG LVFATMITKR LAQVKLLNRA 1001 1050 ENSBTAP00000040462/1-999 WR ENSP00000420608/1-993 WR bmy_13302T0/1-920 WR ENSTTRP00000013467/1-992 WR