KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 4  Type: P  Thu May 15 17:50:35 2014  Check: 00 ..

 Name: ENSBTAP00000040512/1-282  Len:    283  Check:  2524  Weight:  1.00
 Name: bmy_16624T0/1-201         Len:    283  Check:  3650  Weight:  1.00
 Name: ENSP00000361502/1-277     Len:    283  Check:  2160  Weight:  1.00
 Name: ENSTTRP00000010179/1-247  Len:    283  Check:  3477  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000040512/1-282  MAPLRFSANL SWLFPELSGF PARLRAAGSS GFEAAEIGWP YAEPPEALAR 
bmy_16624T0/1-201         ---------- ---------- ---------- ---------- ---------- 
ENSP00000361502/1-277     MAPLRFSANL SWLFPELSGL PARVRAAGSS GFEAVEVAWP YAETPEALAR 
ENSTTRP00000010179/1-247  MAPLRFSANV SWLFPELPSL PARLRAAGSS GFEAAEIGWP YGEPPEALAR 


                          51                                                 100
ENSBTAP00000040512/1-282  AAQEAGLRVV LINTPPGDRE KGENGLGAVP GRQAAFREGL EQAVLYAKAL 
bmy_16624T0/1-201         ---------- -----MGSWE RGSEG----- ---SRFEDGL HSPL---QAH 
ENSP00000361502/1-277     AAREAGLRLV LINTPPGDQE KGEMGLGAVP GRQAAFREGL EQAVRYAKAL 
ENSTTRP00000010179/1-247  TAQEVGLQLV LINTPPGDRE KGEMGLGAVP GRQAAFRDGL EQAVLYAKAL 


                          101                                                150
ENSBTAP00000040512/1-282  GCSRIHLMAA RT-RDSENTQ THILHACMYV EGKHSRESSE VQGWALAQEN 
bmy_16624T0/1-201         FPHRIHLMAG RVPQGADRAA VRGEMETVFL E--NLRHAAG V----LAQEN 
ENSP00000361502/1-277     GCPRIHLMAG RVPQGADRIA VKAEMEAVFL E--NLRHAAG V----LAQED 
ENSTTRP00000010179/1-247  GCPRIHLMAG RVPQGADRAA VRGEMDTVFL E--NLRHAAG V----LAQEN 


                          151                                                200
ENSBTAP00000040512/1-282  LVGLLEPINT RITDPRYFLD TPQQAAAILQ KVGRPNLQLQ MDLFHWQIMD 
bmy_16624T0/1-201         LVGLLEPINT RITDPRYFLD TPQQAAAILE KVGRPNLQLQ MDIFHWQIMD 
ENSP00000361502/1-277     LVGLLEPINT RITDPQYFLD TPQQAAAILQ KVGRPNLQLQ MDIFHWQIMD 
ENSTTRP00000010179/1-247  LVGLLEPINT RITDPRYFLD TPQQAAAILE KVGRPNLQLQ MDIFHWQIMD 


                          201                                                250
ENSBTAP00000040512/1-282  GNLTGNVREF LPIVGHVQVA QVPGRGEPDS PGELNFSYLF QLLEDEGYTG 
bmy_16624T0/1-201         GNLTGNIREF LPFVGHVQVA QVPGRGEPSS PGELNFPYLF QLLEDEGYKG 
ENSP00000361502/1-277     GNLTGNIREF LPIVGHVQVA QVPGRGEPSS PGELNFPYLF QLLEDEGYKG 
ENSTTRP00000010179/1-247  GNLTGNIRKF LPLVGHVQVA QVPGRGEPGS PGELNFPYLF QLLEDEGYKG 


                          251                                                300
ENSBTAP00000040512/1-282  FVGCEYQPRG DTAEGLSWLR SYWEMRGRPQ AGQ 
bmy_16624T0/1-201         FVGCEYQPRG DTVEGLSWLR SYWDKRGRPQ AGQ 
ENSP00000361502/1-277     FVGCEYQPRG DTVEGLSWLR SYWDRRGHPE AGQ 
ENSTTRP00000010179/1-247  FVG------- ---------- ---------- ---