KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:36 2014 Check: 00 .. Name: ENSP00000365503/1-538 Len: 565 Check: 5222 Weight: 1.00 Name: ENSBTAP00000040528/1-479 Len: 565 Check: 8950 Weight: 1.00 Name: bmy_16776T0/1-266 Len: 565 Check: 5299 Weight: 1.00 Name: ENSTTRP00000002272/1-386 Len: 565 Check: 3519 Weight: 1.00 // 1 50 ENSP00000365503/1-538 MPALLLLVLL ASSAGQARAR PSNATSAEPA GPLPALLAHL RRLTGALTGG ENSBTAP00000040528/1-479 ---------- ---------- ---------- ---------- ---------- bmy_16776T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002272/1-386 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000365503/1-538 GGAASPGANG TRTGPAGGAG AAARAPPPAE LCHGYYDVMG QYDATFNCST ENSBTAP00000040528/1-479 ---------G TRASTQSSAG AAARAPPPAE LCHGYYDVMG QYDATFNCST bmy_16776T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002272/1-386 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000365503/1-538 GSYRFCCGTC HYRFCCEHRH MRLAQASCSN YDTPRWATTP PPLAGGAGGA ENSBTAP00000040528/1-479 GSYRFCCGTC HYRFCCEHRH MRLAQASCSN YDTPRWATTP R--------- bmy_16776T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002272/1-386 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000365503/1-538 GGAGGGPGPG QAGWLEGGRT GGAGGRGGEG PGGSTAYVVC GVISFALAVG ENSBTAP00000040528/1-479 ---------- -------GRA GGAGGRGGEG PGGSTAYVVC GVISFALAVG bmy_16776T0/1-266 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002272/1-386 ---GGGLGPG QAGWMEGGRA GGAGGRGGEG PGGSTAYVVC GVISFALAVG 201 250 ENSP00000365503/1-538 VGAKVAFSKA SRAPRAHRDI NVPRALVDIL RHQAGPGTRP DRARSSSLTP ENSBTAP00000040528/1-479 VGAKVAFSKA SRAPRAHREI NVPRALVDIL RHQAGPGARP DRARSSSLTT bmy_16776T0/1-266 ---------- ---------- ----ALVDIL RHQAGPGTRP DRARSSSLTP ENSTTRP00000002272/1-386 VGAKVAFSKA SRAPRAHREI NVPRALVDIL RHQAGPGTRP DRARSSSLTP 251 300 ENSP00000365503/1-538 GIGGPDSMPP RTPKNLYNTV KTPNLDW--- ---------- ---------- ENSBTAP00000040528/1-479 GVGGPDSMPP RTPKNLYNPV KPSNLDHPAA GDTQGRRPLF LRGVARPSAE bmy_16776T0/1-266 GVGGPDSMPP RTPKNLYNTV KPSN------ ---------- ---------- ENSTTRP00000002272/1-386 GVGGPDSMPP RTPKNLYNTV KPTNLXX--- ---------- ---------- 301 350 ENSP00000365503/1-538 --RALPPPSP SLHYSTLSCS RSFHNLSHLP PSYEAAVKSE LNRYSSLKRL ENSBTAP00000040528/1-479 RSRRLGESQR AWSDSTLSCS RSFHNLSHLP PSYEAAVKSE LNRYSSLKRL bmy_16776T0/1-266 ---------- ---------- ---------- ---------- ---------L ENSTTRP00000002272/1-386 --XXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXRYSSL-RL 351 400 ENSP00000365503/1-538 AEKDLDEAYL KRRPL-ELPR GTLPLHALRR PGTGGGYRME AWGGPEELGL ENSBTAP00000040528/1-479 AEKDLDEAYL KRRHLAEVPR GTLPLHALRR PGTGGGYRMD GWGGPEELGL bmy_16776T0/1-266 AEKDLDEAYL KRRHLAEMPR GTLPLHALRR PGTGGGYRMD GWGGPEELGL ENSTTRP00000002272/1-386 AEKDLDEAYL KRRHLAEMPR GTLPLHALRR PGTGGGYRME GWGGPEELGL 401 450 ENSP00000365503/1-538 APAPNPRRVM SQEHLLGDGG RSRYEFTLPR ARLVSQEHLL LSSPEALRQS ENSBTAP00000040528/1-479 APAPHPRRVM SQEHLLGDGG RSRYEFTLPR ARLVSQEHLL LSSPEALRQS bmy_16776T0/1-266 APAPNPRRVM SQEHLLGDGG RARYEFTLPR ARLVSQEHLL LSSPEALRQS ENSTTRP00000002272/1-386 APAPNPRRVM SQEHLLGDGG RARYEFTLPR ARLVSQEHLL LSSPEALRQS 451 500 ENSP00000365503/1-538 REHLLSPPRS PALPPDPTAR ASLAASHSNL LLGPGGPPTP LRGLPPPSSL ENSBTAP00000040528/1-479 REHLLSPPRS PALPPEPSAR ASLAASHSNL LLGPGGPPTP LHGLPPPPGL bmy_16776T0/1-266 REHLLSPPRS PALPPEPAAR TSLAASHSNL LLGPGGPPTP LHGLPPPPGL ENSTTRP00000002272/1-386 REHLLSPPRS PVLPPEPATR ASLAASHSNL LLGPGGPPTP LHGLPPPPGL 501 550 ENSP00000365503/1-538 HA-HHHHALH GSPQPAWMSD AGGGGGTLAR RPPFQRQGTL EQLQFIPGHH ENSBTAP00000040528/1-479 HA-HHHHALH GSPQPAWMSD AGGGGGTLAR RPPFQRQGTL EQLQFIPGHH bmy_16776T0/1-266 HAHHHHHGLH GSPQPAWMSD TGGGGGTLAR RPPFQHQGTL EQLQFIPGHH ENSTTRP00000002272/1-386 HAHHHHHGLH GSPQPAWMSD TGGGGGTLSR RPPFQRQGTL EQLQFIPGHH 551 600 ENSP00000365503/1-538 LPQHLRTASK NEVTV ENSBTAP00000040528/1-479 LPQHLRTASK NEVTV bmy_16776T0/1-266 LPQHLRTASK NEVTV ENSTTRP00000002272/1-386 LPQHLRTASK NEVTV