KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:40 2014 Check: 00 .. Name: ENSP00000386452/1-952 Len: 980 Check: 4317 Weight: 1.00 Name: ENSTTRP00000009988/1-625 Len: 980 Check: 8187 Weight: 1.00 Name: bmy_11384T0/1-972 Len: 980 Check: 2887 Weight: 1.00 Name: ENSBTAP00000040543/1-960 Len: 980 Check: 1659 Weight: 1.00 // 1 50 ENSP00000386452/1-952 MEVRRGDTCP RPHPSGLREE GLEPKVAFPG GANRCWNLGA DAGSRLTDVF ENSTTRP00000009988/1-625 ---------- ---------- ---------- ---------- ---------- bmy_11384T0/1-972 MARRAGEGRA SG-------S GWKPKVALRG GANRCRNLGA DSSSRLTDVF ENSBTAP00000040543/1-960 MEVSCGDPRP PSHPPGLR-E GLEPKVAFRG GANRCWNLSA DASSRLTDVF 51 100 ENSP00000386452/1-952 GSVMLTGSAS FYDCYTSQSE DNVDLRQTYT PF-SSTEYSS SVDSSLFCAP ENSTTRP00000009988/1-625 ---------- ---------- ---------- ---------- ---------- bmy_11384T0/1-972 NSVMLTGSSS FYDCYKSQSE DSVGLRQTYA PLSSSTEYAS SVDSSLFYAP ENSBTAP00000040543/1-960 NSVVLTGSPS FYDCYKSQNE DSVDLRQTYA PLSSSTEYAS SVDSSLFYAP 101 150 ENSP00000386452/1-952 WSTYGDDIKQ PSNSQISIKN RIQTERNDYG SETDLYGLVS NILEEQDKSQ ENSTTRP00000009988/1-625 ---------- ---------- ---------- ---------- ---------- bmy_11384T0/1-972 WSTYGDDIKQ PSNSQINVKN RIQTERNDYG SETDLYGLVS NILEEQDKSQ ENSBTAP00000040543/1-960 WSTYGDDIKQ PSNSQINVKN RIQTERNDYG SETDLYGLVS NILEEQDKSQ 151 200 ENSP00000386452/1-952 PYFAEGTCSS NLKSVWPMNT SRFADHHDLL TETKRPIDTV ISQQAFYSDE ENSTTRP00000009988/1-625 ---------- ---------- ---------- ---------- ---------- bmy_11384T0/1-972 PYFTEGTCSS NLKSVWPVNT SRFADHHDLL TETKRPIDTA ISQQAFYTGE ENSBTAP00000040543/1-960 PYFAEGTCSS NLKSVWPMNT SRFADHHDLL TETKRPVDTA ISQQAFYTGE 201 250 ENSP00000386452/1-952 SVSAMEKQYL RNSNLTPQQK IDELHHGFTG LDLEEQWMYP SRSDHSNCHN ENSTTRP00000009988/1-625 ----VEKQYL HNSNLIPQQK IDELYHGFTG LDLEEQWMYP SRSDHSNCYS bmy_11384T0/1-972 SVSAVEKQYL RNSNLIPQQK IDELYHGFTG LDLEEQWMYP SRSDHSNCYS ENSBTAP00000040543/1-960 SVSAVEKQYL HNSNLIPQQK IDELYHGFTG LDLEEQWMYP SRNDHSNCYN 251 300 ENSP00000386452/1-952 IQTNDTAKTT FQEYPLIKNC FTPQTGLSDI MKESGVDIYH YGRDRICTKG ENSTTRP00000009988/1-625 IQTNDTAKTT FQEYLSIKNC FTPHIGLSDI MKESGVDTYS YGREKICAKG bmy_11384T0/1-972 IQTNDTAKMT FQEYLSIKKC FTPYTGLSDI MKESGVDTYS YGREKICAKG ENSBTAP00000040543/1-960 IQPNDTAKTA FQEYPFIKNC FTPQTGLSDI MKESGVDTYS YGREKICAKG 301 350 ENSP00000386452/1-952 LEAPLQQKRA EMFLSQFNRY NENVDYCRYP EYVHPNKAKL NKCSNFSVQD ENSTTRP00000009988/1-625 LEAPLQQKRA EMFLSQFNRY NENADYCRYP EYAYPNKAKL NKCSNFSVQD bmy_11384T0/1-972 LEAPLQQKRA EMFLSQFNRY NENADYCRYP EYAHPNKAKL NKCSNFSVQD ENSBTAP00000040543/1-960 LEAPLQQKRA EIFLSQFNRY SENPDYCRYP EYAHPNKAKL SKCSNFSVQD 351 400 ENSP00000386452/1-952 SKKLANGTPE TPTVEADTYT KLFQVKPANQ KKMEETIPDQ QNFTFPKTTP ENSTTRP00000009988/1-625 SKKLASGTPE TPTVEADTYT KLFQVKPANQ KKMEATIPDQ QNFTFPKTIP bmy_11384T0/1-972 SKKLASGTPE TPTVEADTYT KLFQVKPANQ KKMEETIPDQ QNFTFPKTIP ENSBTAP00000040543/1-960 SKKLASATPE TPTVEADTYT KLFQVKPANQ KKMEETIPDQ QNFTFPKTTP 401 450 ENSP00000386452/1-952 HLTEKQFAKE AVFTADFGLT SEYGLKPHTA CPA-NDFANV TEKQQFAKPD ENSTTRP00000009988/1-625 HLTEKQLAKE -AFTADFGLK SECGLKPHTA CPANNDFVNV TEKQQFTKPD bmy_11384T0/1-972 HLTEKQFSKE -AFTADFGLK SEYGLKPHTA CPANNDFANV TEKQQFTKPD ENSBTAP00000040543/1-960 HLTEKQFGKE AAFTADFGLK SEYGLKPHTT CSANNDFANV TEKQQFTKPD 451 500 ENSP00000386452/1-952 PPHSEYFKSV NLLSNSATSS GGINLNRPTW MNVQTKNNTP IPYRNQGNLM ENSTTRP00000009988/1-625 PPNSEYFRSV NLLANSAASS RSINLNRPTW MNVQTKNNTL IPYRNQ-NLM bmy_11384T0/1-972 PPNSEYFRSM NLLANSAASS GSINLNRPTW MNVQTKNNTR IPYRNQGNLM ENSBTAP00000040543/1-960 PPNSEYFKSV NLLANSATSS GGINLNRPTW MNVQTKNNTP IFYRNQGNLM 501 550 ENSP00000386452/1-952 KLNSHLSAAS KGSNHSSDFP QLSSTNLTPN SNLFQKYCQE NPSAFSSFDF ENSTTRP00000009988/1-625 -LNTHLSAAS KGSNHSSXXX XXXXXXXXXX XXXXQKYCQE NPSAFSSCDF bmy_11384T0/1-972 KLNTHLSAAS KGFNHSSDFP QLSSTNLTAN SNLFQKYCQE NPSAFSSCDF ENSBTAP00000040543/1-960 KLNSHLSAAS KGSNHSSDFP QLSSTNLTPN SNLFQKYCQE NPSAFSSFDF 551 600 ENSP00000386452/1-952 SYSGAERIQS VNHIEGLTKP GEENLFKLVT DKKIKQPNGF CDNYSAQKYG ENSTTRP00000009988/1-625 GYNGAERIQS VSHMKGLTKT GEENLFESVT DKKIKQPNGF YDNYSAQQYG bmy_11384T0/1-972 GYNGKERIQS VSHMEGLTKT GEENLFESVT DKKIKQPNGF CDNYSAQQYG ENSBTAP00000040543/1-960 GYSGAERIQS INHMEGLTKT GEENLFESVT DKKIKQPNGF CDNYSAQQYG 601 650 ENSP00000386452/1-952 IIENVNKHNF QAKPQSGHYD PEEGPKHLDG LSQNTYQDLL ESQGHSNSHR ENSTTRP00000009988/1-625 IIENVNKHYF QAMPQSGHYD PEEGPKHLDS LSQNTYQDLL ESQGHFNSHR bmy_11384T0/1-972 IIENVNKHNF QATPQSGHYD PEEGPKHLDS LSQNTYQDLL ESQGHFNSHR ENSBTAP00000040543/1-960 IIESVNKHNF QAKPQSGHYD PEEGPKHLDG LSQNTYQDLL ESQGHFNSHR 651 700 ENSP00000386452/1-952 TRGGD---NS RVNRTQVSCF SNNYMMGDLR HNQCFQQLGS NGFPLRSTHP ENSTTRP00000009988/1-625 QGSGENNINS RVNRTQVSCF SNNYMMGDLR HNQSFQQLGS NGFPLRSTHP bmy_11384T0/1-972 QGSGDNNINS RVNHTQVSCF SNNYMMGDLR HNQSFQQLGS NGFPLRSTHP ENSBTAP00000040543/1-960 QGSGDNNINS RVNRTQASCF SNNYMMGDLR HNQSFQQLGS SGFPLRSTHP 701 750 ENSP00000386452/1-952 FGHSVVPLLD SYDLLSYDDL SHLYPYFN-M MYGDNSFSGL MPTFGFQRPI ENSTTRP00000009988/1-625 LGHSVVPLLD SYDLFSYDDL SHLNPYFNDM MYGDNSFSGF VPTFGFQRPI bmy_11384T0/1-972 FGHSVVPLLD SYDLCSYDDL SHLYPYFNDM MYGDNSFSGF VPTFGFQRPI ENSBTAP00000040543/1-960 FGHSVVPLLD SYDLFSYDDL SHLYPYFNDM MYGDNSFSGF VPTFGFQRPI 751 800 ENSP00000386452/1-952 KTRSGPASEL HIRLEECCEQ WRALEKERKK TELALAKNYP GKKVSSTNNT ENSTTRP00000009988/1-625 KTRSGPASEL HIRLEECYEQ WRALEKERKT TELALAKNYP AKKVSSTNNT bmy_11384T0/1-972 KTRSGPASEL HIRLEGCYEQ WRALEKERKK TELALTKNYP GKKVSSTNNT ENSBTAP00000040543/1-960 KTRSGPASEL HIRLEECYEQ WRALEKERKK TELALAKNYP GKKVSSTNNT 801 850 ENSP00000386452/1-952 PVPRLTSNPS RVDRLIVDEL RELARVVTLL GKMERLRSSL LHASISTALD ENSTTRP00000009988/1-625 PIPRLTSNPS RVDRLIVDEL REQARVS--- ---------- ---------- bmy_11384T0/1-972 PIPRLTSNPS RVDRLIVDEL REQARVVTLL GKMERLRSSP LHASISTALD ENSBTAP00000040543/1-960 PIPRLTSNPS RVDRLIVDEL REQARVVTLL GKMERLRSSP LHANISTALD 851 900 ENSP00000386452/1-952 RHLESIHIVQ SRRKDEIVNA SNRQRQGVPR CQDDRDVFAL ASAIKEMCVA ENSTTRP00000009988/1-625 ---------- ---------- ---------- ---------- ---------- bmy_11384T0/1-972 RHLESIHIVQ SRRKDEIVNA SNRQRQGVPR CQDDRDVFAL ASAIKEMCVA ENSBTAP00000040543/1-960 RHLESIHIVQ SRRKDEIVNA SNRQRQGVPR CQDDRDVFAL ASAIKEMCVA 901 950 ENSP00000386452/1-952 TRKTRTALWC ALQMTLPKTA STA---DVVK PLQDTVNCED KVHESINSSN ENSTTRP00000009988/1-625 ---------- ---------- ---------- -------CEN IQ-------- bmy_11384T0/1-972 TRKARTTLWC ALQMTLPKPA STAGQTDVEK ALQDIVNCED KVHESLNSSN ENSBTAP00000040543/1-960 TRKARTTLWC ALQMTLPKTA STAGQTDVEK ALQDIVNCED KVHESLNSSN 951 1000 ENSP00000386452/1-952 PMNQRGETNK H--------- ---------- ENSTTRP00000009988/1-625 ---------- ---------- ---------- bmy_11384T0/1-972 PMNRRDDVQK KLIENAGVTV GRNTLITEMP ENSBTAP00000040543/1-960 PVNQRGEANK H--------- ----------