KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:41 2014 Check: 00 .. Name: BACU019620/1-461 Len: 557 Check: 3692 Weight: 1.00 Name: ENSP00000416293/1-492 Len: 557 Check: 5230 Weight: 1.00 Name: ENSBTAP00000040563/1-492 Len: 557 Check: 5544 Weight: 1.00 Name: bmy_17909T0/1-540 Len: 557 Check: 7134 Weight: 1.00 Name: ENSTTRP00000002977/1-486 Len: 557 Check: 9621 Weight: 1.00 // 1 50 BACU019620/1-461 -----QKLTG RLMLAVGGAV LGSLQFGYNT GVINAPQK-- ---------- ENSP00000416293/1-492 MEPSSKKLTG RLMLAVGGAV LGSLQFGYNT GVINAPQK-- ---------- ENSBTAP00000040563/1-492 MEPTSKKLTG RLMLAVGGAV LGSLQFGYNT GVINAPQK-- ---------- bmy_17909T0/1-540 ---------- --MLAVGGAV LGSLQFGYNT GVINAPQKGS TAKSGNNGGN ENSTTRP00000002977/1-486 ------KLTG RLMLAVGGAV LGSLQFGYNT GVINAPQK-- ---------- 51 100 BACU019620/1-461 ---------- ---------- ---------- ---------- --------VI ENSP00000416293/1-492 ---------- ---------- ---------- ---------- --------VI ENSBTAP00000040563/1-492 ---------- ---------- ---------- ---------- --------VI bmy_17909T0/1-540 GNLASVDGRS PEQNPASRDK MVLFEAGSAR EKDDWVLALP TRLLLLLQVI ENSTTRP00000002977/1-486 ---------- ---------- ---------- ---------- --------VI 101 150 BACU019620/1-461 EEFYNQTWIH RYKERILPAT LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF ENSP00000416293/1-492 EEFYNQTWVH RYGESILPTT LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF ENSBTAP00000040563/1-492 EEFYNQTWVQ RYGEPIPPAT LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF bmy_17909T0/1-540 EEFYNQTWIY RYGERILPAT LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF ENSTTRP00000002977/1-486 EEFYNQTWIH RYGERILPTT LTTLWSLSVA IFSVGGMIGS FSVGLFVNRF 151 200 BACU019620/1-461 GRRNSMLMMN LLTFVSAVLM GFSKLGKSFE MLILGRFVIG VYCGLTTGFV ENSP00000416293/1-492 GRRNSMLMMN LLAFVSAVLM GFSKLGKSFE MLILGRFIIG VYCGLTTGFV ENSBTAP00000040563/1-492 GRRNSMLMMN LLAFVSAVLM GFSKLGKSFE MLILGRFIIG VYCGLTTGFV bmy_17909T0/1-540 GRRNSMLMIN LLTFVSAVLM GFSKLGKSFE MLILGRFVIG VYCGLTTGFV ENSTTRP00000002977/1-486 GRRNSMLMMN LLTFVSAVLM GFSKLAKSFE MLILGRFVIG VYCGLTTGFV 201 250 BACU019620/1-461 PMYVGEVSPT DLRGALGTLH QLGIVIGILI AQV------- -SPHPWLQCL ENSP00000416293/1-492 PMYVGEVSPT ALRGALGTLH QLGIVVGILI AQVFGLDSIM GNKDLWPLLL ENSBTAP00000040563/1-492 PMYVGEVSPT ELRGALGTLH QLGIVVGILI AQVFGLDSIM GNQELWPLLL bmy_17909T0/1-540 PMYVGEVSPT DLRGALGTLH QLGIVIGILI AQVFGLDSIM GNQELWPLLL ENSTTRP00000002977/1-486 PMYVGEVSPT DLRGALGTLH QLGIVVGILI AQVFGLDSIM GNQDLWPLLL 251 300 BACU019620/1-461 RCVSRFNSSP GLPQPRKGQP RRHILGAGPE NNTAHHSPGG PMLKKLRGTS ENSP00000416293/1-492 SIIFIPALLQ CIVLPFCPES PRFLLINRNE ENRAK----- SVLKKLRGTA ENSBTAP00000040563/1-492 SVIFIPALLQ CILLPFCPES PRFLLINRNE ENRAK----- SVLKKLRGTA bmy_17909T0/1-540 SVIFIPALLQ CILLPFCPES PRFLLINRNE ENRAK----- SVLKKLRGTS ENSTTRP00000002977/1-486 SVIFIPALLQ CILLPFCPES PRFLLINRNE ENRAK----- SVLKKLRGTS 301 350 BACU019620/1-461 DVTRDLQEMK EESRQMMREK KVTILELFRS AAYRQPILIA VVLQLSQQLS ENSP00000416293/1-492 DVTHDLQEMK EESRQMMREK KVTILELFRS PAYRQPILIA VVLQLSQQLS ENSBTAP00000040563/1-492 DVTRDLQEMK EESRQMMREK KVTILELFRS AAYRQPILIA VVLQLSQQLS bmy_17909T0/1-540 DVTRDLQEMK EESRQMMREK KVTILELFRS AAYRQPILIA VVLQLSQQLS ENSTTRP00000002977/1-486 DVTRDLQEMK EESRQMMREK KVTILELFRS TAYRQPILIA VVLQLSQQLS 351 400 BACU019620/1-461 GINAVFYYST SIFEKAGVQQ PVYATIGSGI VNTAFTVVSL FVVERAGRRT ENSP00000416293/1-492 GINAVFYYST SIFEKAGVQQ PVYATIGSGI VNTAFTVVSL FVVERAGRRT ENSBTAP00000040563/1-492 GINAVFYYST SIFEKAGVQQ PVYATIGSGI VNTAFTVVSL FVVERAGRRT bmy_17909T0/1-540 GINAVFYYST SIFEKAGVQQ PVYATIGSGI VNTAFTVVSL FVVERAGRRT ENSTTRP00000002977/1-486 GINAVFYYST SIFEKAGVQQ PVYATIGSGI VNTAFTVVSL FVVERAGRRT 401 450 BACU019620/1-461 LHLIGLAGMA GCAVLMTIAL ALLEQLPWMS YLSIVAIFGF VAFFEVGPGP ENSP00000416293/1-492 LHLIGLAGMA GCAILMTIAL ALLEQLPWMS YLSIVAIFGF VAFFEVGPGP ENSBTAP00000040563/1-492 LHLIGLAGMA GCAVLMTIAL ALLERLPWMS YLSIVAIFGF VAFFEVGPGP bmy_17909T0/1-540 LHLIGLAGMA GCAVLMTIAL ALLEQLPWMS YLSIVAIFGF VAFFEVGPGP ENSTTRP00000002977/1-486 LHLIGLAGMA GCAVLMTIAL ALLERLPWMS YLSIVAIFGF VAFFEVGPGP 451 500 BACU019620/1-461 IPWFIVAELF SQGPRPAAIA VAGFSNWTSN FIVGMCFQYV EQLCGPYVFI ENSP00000416293/1-492 IPWFIVAELF SQGPRPAAIA VAGFSNWTSN FIVGMCFQYV EQLCGPYVFI ENSBTAP00000040563/1-492 IPWFIVAELF SQGPRPAAIA VAGFSNWTSN FIVGMCFQYV EQLCGPYVFI bmy_17909T0/1-540 IPWFIVAELF SQGPRPAAIA VAGFSNWTSN FIVGMCFQYV EQLCGPYVFI ENSTTRP00000002977/1-486 IPWFIVAELF SQGPRPAAIA VAGFSNWTSN FIVGMCFQYV EQLCGPYVFI 501 550 BACU019620/1-461 IFTVLLVLFF IFTYFKVPET KGRTFDEIAS GFRQ------ ---------- ENSP00000416293/1-492 IFTVLLVLFF IFTYFKVPET KGRTFDEIAS GFRQGGASQS DKTPEELFHP ENSBTAP00000040563/1-492 IFTVLLVLFF IFTYFKVPET KGRTFDEIAS GFRQGGASQS DKTPEELFHP bmy_17909T0/1-540 IFTVLLVLFF IFTYFKVPET KGRTFDEIAS GFRQGGASQS DKTPEELFHP ENSTTRP00000002977/1-486 IFTVLLVLFF IFTYFKVPET KGRTFDEIAS GFRQGGASQS DKTPEELFHP 551 600 BACU019620/1-461 ------- ENSP00000416293/1-492 LGADSQV ENSBTAP00000040563/1-492 LGADSQV bmy_17909T0/1-540 LGADSQV ENSTTRP00000002977/1-486 LGADSQV