KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:42 2014 Check: 00 .. Name: ENSBTAP00000040568/1-506 Len: 557 Check: 6549 Weight: 1.00 Name: ENSP00000370031/1-515 Len: 557 Check: 3246 Weight: 1.00 Name: ENSTTRP00000011169/1-523 Len: 557 Check: 8754 Weight: 1.00 Name: bmy_11889T0/1-515 Len: 557 Check: 3518 Weight: 1.00 Name: BACU013154/1-531 Len: 557 Check: 1082 Weight: 1.00 // 1 50 ENSBTAP00000040568/1-506 APASDMEPLL LAWSYFRRRR FQLCADLCTQ MLEKSPCD-- ---------- ENSP00000370031/1-515 -MSSEMEPLL LAWSYFRRRK FQLCADLCTQ MLEKSPYD-- ---------- ENSTTRP00000011169/1-523 -MGSEMDPLL LAWSYF-RRK FQLCADLCTQ MLEKSPYD-- ---------- bmy_11889T0/1-515 -MGSEMEPLL LAWSYFRRRK FQLCADLCTQ MLEKSPYD-- ---------- BACU013154/1-531 -MGSEMEPLL LAWSYFRRRK FQLCADLCTQ MLEKSPYDQE LYYPKNVYYL 51 100 ENSBTAP00000040568/1-506 ---------- ----QAAWIL KARALTEMVY VDEIDVDEEG IAEMILDENA ENSP00000370031/1-515 ----QEPDPE LPVHQAAWIL KARALTEMVY IDEIDVDQEG IAEMMLDENA ENSTTRP00000011169/1-523 ---------- ----QAAWIL KARALTEMVY IDEIDVDQEG IAEMILDENA bmy_11889T0/1-515 ----QEPDPE LPVSQAAWIL KARALTEMVY IDEIDVDQEG IAEMILDENA BACU013154/1-531 LNAFQEPDPE LPVSQAAWIL KARALTEMVY VDEIDIDQEG IAEMILDENA 101 150 ENSBTAP00000040568/1-506 IAQVPRPGTS LKLPGTNQTG GPSPAVRPVT QAGRPITGFL RPSTQSGRPG ENSP00000370031/1-515 IAQVPRPGTS LKLPGTNQTG GPSQAVRPIT QAGRPITGFL RPSTQSGRPG ENSTTRP00000011169/1-523 IAQVPRPGTS LKLPGTNQTG GPSPAVRPIT QAGRPITGFL RPSTQSGRPG bmy_11889T0/1-515 IAQVPRPGTS LKLPGTNQTG GPSPAVRPIT QAGRPITGFL RPSTQSGRPG BACU013154/1-531 IAQVPRPGTS LKLPGTNQTG GPSPAVRPIT QAGRPITGFL RPSTQSGRPG 151 200 ENSBTAP00000040568/1-506 TIEQAIKTPR TAYTARPIAS SSGRFVRLGT ASMLTSPDGP FINLSRLNLA ENSP00000370031/1-515 TMEQAIRTPR TAYTARPITS SSGRFVRLGT ASMLTSPDGP FINLSRLNLT ENSTTRP00000011169/1-523 TMEQAIRTPR TAYTARPITS SSGRFVRLGT ASMLTSPDGP FINLSRLNLT bmy_11889T0/1-515 TMEQAIRTPR TAYTARPITS SSGRFVRLGT ASMLTSPDGP FINLSRLNLT BACU013154/1-531 TMEQAIRTPR TAYTARPITS SSGRFVRLGT ASMLTSPDGP FINLSRLNLT 201 250 ENSBTAP00000040568/1-506 KYAQKPKLAK ALFEYIFHHE NDVKT----- ---------- ---------- ENSP00000370031/1-515 KYSQKPKLAK ALFEYIFHHE NDVKT----- ---------- ---------- ENSTTRP00000011169/1-523 KYAQKPKLAK ALFEYIFHHE NDVKTIHLED VVLHLGIYII LLRNVSYIEK bmy_11889T0/1-515 KYAQKPKLAK ALFEYIFHHE NDVKT----- ---------- ---------- BACU013154/1-531 KYAQKPKLAK ALFEYIFHHE NDVKT----- ---------- ---------- 251 300 ENSBTAP00000040568/1-506 ALDLAALSTE HSQYKDWWWK VQIGKCYYRL GLYREAEKQF KSALKQQEMV ENSP00000370031/1-515 ALDLAALSTE HSQYKDWWWK VQIGKCYYRL GMYREAEKQF KSALKQQEMV ENSTTRP00000011169/1-523 ALDLAALSTE HSQYKDWWWK VQIGKCYYRL GMYREAEKQF KSALKQQEMV bmy_11889T0/1-515 ALDLAALSTE HSQYKDWWWK VQIGKCYYRL GMYREAEKQF KSALKQQEMV BACU013154/1-531 ALDLAALSTE HSQYKDWWWK VQIGKCYYRL GMYREAEKQF KSALKQQEMV 301 350 ENSBTAP00000040568/1-506 DTFLYLAKVY ISLDQPLTAL NLFKQGLDKF PGEVTLLCGI ARIYEEMNNI ENSP00000370031/1-515 DTFLYLAKVY VSLDQPVTAL NLFKQGLDKF PGEVTLLCGI ARIYEEMNNM ENSTTRP00000011169/1-523 DTFLYLAKVY ISLDQPVTAL NLFKQGLDKF PGEVALLCGI ARIYEEMNNI bmy_11889T0/1-515 DTFLYLAKVY ISLDQPVTAL NLFKQGLDKF PGEVALLCGI ARIYEEMNNI BACU013154/1-531 DTFLYLAKVY ISLDQPVTAL NLFKQGLDKF PGEVTLLCGI ARIYEEMNNI 351 400 ENSBTAP00000040568/1-506 SSATEYYKEV LKQDNTHVEA IACIGSNHFY TDQPEVALRF YRRLLQMGVY ENSP00000370031/1-515 SSAAEYYKEV LKQDNTHVEA IACIGSNHFY SDQPEIALRF YRRLLQMGIY ENSTTRP00000011169/1-523 SSATEYYKEV LKQDNTHVEA IACIGSNHFY SDQPEVALRF YRRLLQMGVY bmy_11889T0/1-515 SSATEYYKEV LKQDNTHVEA IACIGSNHFY SDQPEVALRF YRRLLQMGVY BACU013154/1-531 SSATEYYKEV LKQDNTHVEA IACIGSNHFY SDQPEVALRF YRRLLQMGVY 401 450 ENSBTAP00000040568/1-506 NCQLFNNLGL CCFYAQQYDM TLTSFERALS LAENEEEVAD VWYNLGHVAV ENSP00000370031/1-515 NGQLFNNLGL CCFYAQQYDM TLTSFERALS LAENEEEAAD VWYNLGHVAV ENSTTRP00000011169/1-523 NCQLFNNLGL CCFYAQQYDM TLTSFERALS LAENEEEIAD VWYNLGHVAV bmy_11889T0/1-515 NCQLFNNLGL CCFYAQQYDM TLTSFERALS LAENEEEVAD VWYNLGHVAV BACU013154/1-531 NCQLFNNLGL CCFYAQQYDM TLTSFERALS LAENEEEVAD VWYNLGHVAV 451 500 ENSBTAP00000040568/1-506 GTGDTNLAHQ CFRLALVSNN QHAEAYNNLA VLEMRRGHVE QAKALLQTAS ENSP00000370031/1-515 GIGDTNLAHQ CFRLALVNNN NHAEAYNNLA VLEMRKGHVE QARALLQTAS ENSTTRP00000011169/1-523 GIGDTNLAHQ CFRLALVNNN NHAEAYNNLA VLEMRKGHVE QAA--LQT-S bmy_11889T0/1-515 GIGDTNLAHQ CFRLALVNNN NHAEAYNNLA VLEMRKGHVE QARALLQTAS BACU013154/1-531 GIGDTNLAHQ CFRLALVSNN SHAEAYNNLA VLEMRKGHVE QARALLQTAS 501 550 ENSBTAP00000040568/1-506 SLAPHMYEPH FNFATISDKI GDLQRSYAAA KKSEAAFPDH VDTQHLIKQL ENSP00000370031/1-515 SLAPHMYEPH FNFATISDKI GDLQRSYVAA QKSEAAFPDH VDTQHLIKQL ENSTTRP00000011169/1-523 SLAP-MYEAH FN--ATSDKM GDLQRSYIAA QKSEAAFPDH VDTQHLIKQL bmy_11889T0/1-515 SLAPHMYEPH FNFATVSDKM GDLQRSYIAA QKSEAAFPDH MDTQHLIKQL BACU013154/1-531 SLAPHMYEPH FNFATVSDKM GDLQKSYIAA QKSEAAFPDH VDTQHLIKQL 551 600 ENSBTAP00000040568/1-506 EQHFAML ENSP00000370031/1-515 RQHFAML ENSTTRP00000011169/1-523 KQHFAML bmy_11889T0/1-515 KQHFAML BACU013154/1-531 KQHFAML