KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:42 2014 Check: 00 .. Name: ENSP00000363603/1-466 Len: 483 Check: 3521 Weight: 1.00 Name: ENSTTRP00000015296/1-465 Len: 483 Check: 1100 Weight: 1.00 Name: ENSBTAP00000040572/1-468 Len: 483 Check: 1464 Weight: 1.00 Name: bmy_04554T0/1-389 Len: 483 Check: 7588 Weight: 1.00 Name: BACU005775/1-477 Len: 483 Check: 3800 Weight: 1.00 // 1 50 ENSP00000363603/1-466 MRAPGMRSRP AGPALLL--- -------LLL FLGAAESVRR AQP------P ENSTTRP00000015296/1-465 VPNPEMKLRV VGAKLL---- -------LLL VLGAVRALRC THP------P ENSBTAP00000040572/1-468 -----MRSWV VGARLLLL-- -----LQLVL VLGAVRLPPC TDPRHCTDPP bmy_04554T0/1-389 -----MKSRV VGAELLL--- ------HLLL VLGAVRAPRC THPARCTDPP BACU005775/1-477 -----MKSRV VGAELLLLLL LLQLQLHLLL VLGAVRAPRC THPARCTDPP 51 100 ENSP00000363603/1-466 RRYTPDWPSL DSRPLPAWFD EAKFGVFIHW GVFSVPAWGS EWFWWHWQGE ENSTTRP00000015296/1-465 RRYTADWPSL DSRPLPAWFD EAKFGVFVHW GVFSVPAWGS EWFWWHWKGE ENSBTAP00000040572/1-468 -RYTPDWPSL DSRPLPAWFD EAKFGVFVHW GVFSVPAWGS EWFWWHWQGE bmy_04554T0/1-389 RRYTADWPSL DSRPLPAWFD EAKFGVFVHW GVFSVPAWGS EWFWWHWKGE BACU005775/1-477 RRYTADWPSL DSRPLPAWFD EAKFGVFVHW GVFSVPAWGS EWFWWHWKGE 101 150 ENSP00000363603/1-466 GRPQYQRFMR DNYPPGFSYA DFGPQFTARF FHPEEWADLF QAAGAKYVVL ENSTTRP00000015296/1-465 KLPQYESFMK ENYPPNFTYG DFGPRFTARF FHPDSWANLF EAAGAXXXXX ENSBTAP00000040572/1-468 KLPQYESFMK ENYPPDFSYA DFGPRFTARF FNPDSWADLF KAAGAKYVVL bmy_04554T0/1-389 KLPQYESFMN ENYPPNFTYG DFGPRFTARF FHPDSWANLF EAAGAKYVVL BACU005775/1-477 KLPQYESFMN ENYPPNFTYG DFGPRFTARF FHPDSWANLF EAAGAKYVVL 151 200 ENSP00000363603/1-466 TTKHHEGFTN WPSPVSWNWN SKDVGPHRDL VGELGTALRK RNIRYGLYHS ENSTTRP00000015296/1-465 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XNIRYGLYHS ENSBTAP00000040572/1-468 TTKHHEGYTN WPSPVSWNWN SKDVGPHRDL VGELGTAIRK RNIRYGLYHS bmy_04554T0/1-389 TTKHHEGFTN WPSPVSWNWN SKDLGPHRDL VGELGTAIRN RNIRYGLYHS BACU005775/1-477 TTKHHEGFTN WPSPVSWNWN SKDLGPHRDL VGELGTAIRN RNIRYGLYHS 201 250 ENSP00000363603/1-466 LLEWFHPLYL LDKKNGFKTQ HFVSAKTMPE LYDLVNSYKP DLIWSDGEWE ENSTTRP00000015296/1-465 LLEWFHPLYL RDKKNGFKTQ HFVHAKTMPE LYDLVSRYKP DLIWSDGEWE ENSBTAP00000040572/1-468 LLEWFHPLYL RDKKNGFKTQ YFVNAKTMPE LYDLVNRYKP DLIWSDGEWE bmy_04554T0/1-389 LLEWFHPLYL RDKKNGFKTQ HFVHAKTMPE LYDLVSRYKP DLIWSDGEWE BACU005775/1-477 LLEWFHPLYL RDKKNGFKTQ HFVRAKTMPE LYDLVSRYKP DLIWSDGEWE 251 300 ENSP00000363603/1-466 CPDTYWNSTN FLSWLYNDSP VKDEVVVNDR WGQNCSCHHG GYYNCEDKFK ENSTTRP00000015296/1-465 CPDTYWNSTN FLAWLYNDSP VKDVVVVNDR WGQNCSCRHG GYYNCQDKFK ENSBTAP00000040572/1-468 CPDTYWNSTD FLAWLYNDSP VKDEVVVNDR WGQNCSCHHG GYYNCKDKFQ bmy_04554T0/1-389 CPDTYWNSTN FLAWLYNDSP VKDVVVVNDR WGQNCSCRHG GYYNCQDKFK BACU005775/1-477 CPDTYWNSTN FLAWLYNDSP VKDVVVVNDR WGQNCSCRHG GYDNCQDKFK 301 350 ENSP00000363603/1-466 PQSLPDHKWE MCTSIDKFSW GYRRDMALSD VTEESEIISE LVQTVSLGGN ENSTTRP00000015296/1-465 PETLPDHKWE MCTSIDKLSW GYRRNMAMAD IASESQIISE LIQTVSLGGN ENSBTAP00000040572/1-468 PETLPDHKWE MCTSIDQRSW GYRRDMEMAD ITNESTIISE LVQTVSLGGN bmy_04554T0/1-389 PETLPDHKWE MCTSIDKLSW GYRRDMAMAD IASESRIISE LIQTVSLGGN BACU005775/1-477 PETLPDHKWE MCTSIDKLSW GYRRDMAMAD IASESRIISE LIQTVSLGGN 351 400 ENSP00000363603/1-466 YLLNIGPTKD GLIVPIFQER LLAVGKWLSI NGEAIYASKP WRVQWEKNTT ENSTTRP00000015296/1-465 YLLNVGPTKD GLIVPIFQER LLAVGKWLSI NGEAIYASKP WRVQLEKNTT ENSBTAP00000040572/1-468 YLLNVGPTKD GLIVPIFQER LLAVGKWLSI NGEAIYASKP WRVQSEKN-- bmy_04554T0/1-389 YLLNIGPTKD GLIVPIFQER LLAVGKWLSI NGEAIYASKP WRVQSEKNTT BACU005775/1-477 YLLNIGPTKD GLIVPIFQER LLAVGKWLSI NGEAIYASKP WRVQSEKNTT 401 450 ENSP00000363603/1-466 SVWYTSKGSA VYAIFLHWPE NGVLNLESPI TTSTTKITML GIQGDLKWST ENSTTRP00000015296/1-465 SVWYTSKGST VYAIFLHWPE DGILSLKSPI TTSTTEVTML GIEKYLKWSP ENSBTAP00000040572/1-468 SVWYTSKGLA VYAILLHWPE YGILSLISPI ATSTTKVTML GIQKDLKWSL bmy_04554T0/1-389 SVW------- ---------- ---------- ---------- ---------- BACU005775/1-477 SVWYTSKGSA VYAIFLHWPE DGILSLKSPI TTSTTEVTML GIEKHLKWSP 451 500 ENSP00000363603/1-466 DP-DKGLFIS LPQLPPSAVP AEFAWTIKLT GVK ENSTTRP00000015296/1-465 NP-GKGLLVY LPQLPPSALP TEFAWTVKLT GVE ENSBTAP00000040572/1-468 NPSGKGLLVF LPQLPPAALP TEFAWTIKLT GVK bmy_04554T0/1-389 ---------- ---------- ---------- --- BACU005775/1-477 NP-GKGLLVY LPQLPPSALP TEFAWTVKLT GVE