KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:44 2014 Check: 00 .. Name: ENSP00000377176/1-599 Len: 647 Check: 7183 Weight: 1.00 Name: ENSBTAP00000040596/1-516 Len: 647 Check: 1926 Weight: 1.00 Name: ENSTTRP00000012187/1-646 Len: 647 Check: 6499 Weight: 1.00 Name: bmy_11895T0/1-443 Len: 647 Check: 4948 Weight: 1.00 Name: BACU013150/1-595 Len: 647 Check: 6209 Weight: 1.00 // 1 50 ENSP00000377176/1-599 ---------- ---------- ---------- ---------- ------MDGS ENSBTAP00000040596/1-516 ---------- ---------- ---------- ---------- ------MDAS ENSTTRP00000012187/1-646 QLLCVSLAPA APVASFSPNV CCGGARPREG PKGTQRVPTA AARGLSMDGS bmy_11895T0/1-443 ---------- ---------- ---------- ---------- ---------- BACU013150/1-595 ---------- ---------- ---------- ---------- ------MDGS 51 100 ENSP00000377176/1-599 RRVRATSVLP RYGPPCLFKG HLSTKSNAFC TDSSSLRLST LQLVKNHMAV ENSBTAP00000040596/1-516 RRVRATSVLP TFDASCLFKG HLSTKSNALC TDSSSLRLST LQLVKNHMAV ENSTTRP00000012187/1-646 RRVRATSVLP RYGPPCLFKG HLSTKSNAFC TDSSSLRLST LQLVKNHMAV bmy_11895T0/1-443 ---------- ---------- ---------- ---------- ---------- BACU013150/1-595 RRVRATSVLP RYGPPCLFKG HLSTKSNAFC TDSSSLRLST LQLVKNHMAV 101 150 ENSP00000377176/1-599 HYNKILSAKA AVDCSVPVSV STSIKYADQQ RREKLKKELA QCEKEFKLTK ENSBTAP00000040596/1-516 HYNKILSAKA AVDCSVPLSM SASIKYADQQ RREKLKKELA RCGRGLKFTK ENSTTRP00000012187/1-646 HYNKILSAKA AVDCSVPLSM SASIKYADQQ RREKLKKGLA RCERELKLTK bmy_11895T0/1-443 ---------- ---------M SASIKYADQQ RREKLKKELA RCERELKLTK BACU013150/1-595 HYNKILSAKA AVDCSVPLSM SASIKYADQQ RREKLKKELA RCERELKLTK 151 200 ENSP00000377176/1-599 TAMRANYKNN SKSLFNTLQK PSGEPQIEDD MLKEEMNGFS SFARSLVPSS ENSBTAP00000040596/1-516 TTVHP--KSH SRSLLNALQK PSGEPQDENS LLIEEVNEFP SFTQSPVISS ENSTTRP00000012187/1-646 TAMQSNSKSN SKSLFNTLQK PPGEPQDEDA MLIEQVNRFP SFKRSPVTSS bmy_11895T0/1-443 TAMQSNSKSN SKSLLNTLQK PPGEPQDEDA MLIKEVNGFP SFKRSPVTSS BACU013150/1-595 TAVQSNSKSN SKSLLNTLQK PPGEPQDEDA VLMEEVNGFP SFKRSPVTSS 201 250 ENSP00000377176/1-599 ERLHLSLHKS SKVITNGPEK NSSSSPSSVD YAASGPRKLS SGALYGRRPR ENSBTAP00000040596/1-516 ERLSL--PKS QNVLTNCTEK NSSCSMSSMD YTASGSKKPS SGTSYGRGPR ENSTTRP00000012187/1-646 ERLHLNPPKS DKVLTNGTEK NSSSFLSSMD HAASGPRKSS SGTSYGRRPR bmy_11895T0/1-443 ERLHLSPPKS GKVLTNGTEK NSSSFPSSMD YAASGPRKSS SGTSYGRGPR BACU013150/1-595 ERLHLSPPKS GKVLTNGTEK NSSSFPSSMD YAASGPRKSS SGTSYGRRPR 251 300 ENSP00000377176/1-599 STFPNSHRFQ LVISKAPSGD LLDKHSELFS NKQLPFTPRT LKTEAKSFLS ENSBTAP00000040596/1-516 GTFPGSQKFQ LVISKAPSGD LLDKHSEHFS NRHLPFTPRT LKTEAKSFLS ENSTTRP00000012187/1-646 STSLNSQRFQ LVISKAPSGD LLDKHSELFS NRHLPFTPRT LKTEAKSFLS bmy_11895T0/1-443 GTSLNSQRFQ LVISKAPSGD LLDKHSELFS NRHLPFTPRT LKTEAKSFLS BACU013150/1-595 GTSLNSQRFQ LVVSKAPSGD LLDKHSELFS NRHLPFTPRT LKTEAKSFLS 301 350 ENSP00000377176/1-599 QYRYYTPAKR KKDFTDQRIE AETQTEL-SF KSELGTAETK NMTDSEMNIK ENSBTAP00000040596/1-516 QYRYYTPAKR KKNFTNRRIE AETQTELSSF KSDFETVEIK NATDSEMNVT ENSTTRP00000012187/1-646 QYRYYTPAKR KKDFTDQQIE AETQTQLSSF QSDFETVEIK NFTDSEMNIK bmy_11895T0/1-443 QYRYYTPAKR KKDFTDQQIE AETQTEL--- ---------- ---------- BACU013150/1-595 QYRYYTPAKR KKDFTDQQIE AETQTELSSF QSDFETVEIK NSTDSEMNIK 351 400 ENSP00000377176/1-599 QASNCVTYDA KEKIAPLPLE GHDSTWDEIK DDALQHSSPR AMCQYSLKPP ENSBTAP00000040596/1-516 QASGCVSYGT KGRTTPSASP GRELPWGKVR DSALQCSSPR AVCQYSLQPP ENSTTRP00000012187/1-646 QASSCMSYGT KGKITPLPLQ GHELPWDEVK DSALQCSSSR AVCQCSLQPP bmy_11895T0/1-443 ---------- ---------- ---------- ---------- ---------- BACU013150/1-595 QASSCMSYGT KGKITPLPLQ GHELPWDEVK DGALQCSSSR AVCQCSLQPS 401 450 ENSP00000377176/1-599 STRKIYSDEE ELLYLSFIED VTDEILKLGL FSNRFLERLF ERHIKQNK-H ENSBTAP00000040596/1-516 SGRKIYSDEE ELLYLSFIED VTDEILKLGL FSNRFLERLF ERHIKQNKHH ENSTTRP00000012187/1-646 SGRKIYSDEE ELLYLSFIED VTDEILKLGL FSNRFLERLF ERHIKQNKHH bmy_11895T0/1-443 ------SSEE ELLYLSFIED VTDEILKLGL FSNRFLERLF ERHIKQNKHH BACU013150/1-595 SGRKIYSDEE ELLYLSFIED VTDEILKLGL FSNRFLERLF ERHIKQNKHH 451 500 ENSP00000377176/1-599 LEEEKMRHLL HVLKVDLGCT SEENSVKQND VDMLNVFDFE KAGNSEPNEL ENSBTAP00000040596/1-516 LEEEKMRQLL HVLKVDLGCM SKENSGKLDS VDTLHLCDVE KAENLEQNEN ENSTTRP00000012187/1-646 LEEEKMRHLL HILKVDLGCM SKENSVMLDD VGMLHLLDFE KAENSEQNEY bmy_11895T0/1-443 LEEEKMRHLL HILKVDLGCM SKENSVMLDD VGMLHLLDFE KAENSEQNEY BACU013150/1-595 LEEEKMRHLL HILKVDLGCM SKENSVMLDD VGMLHLLDFE KAENSEQNEY 501 550 ENSP00000377176/1-599 KNESEVTIQQ ERQQYQKALD MLLSAPKDEN EIFPSPTEFF MPIYKSKHSE ENSBTAP00000040596/1-516 KSEQDLIIQQ ERQEYQKALN MLLTIPKEEN EIVSS-NEFF LPIHKSKYSE ENSTTRP00000012187/1-646 KNEQDLAIQQ ERQEYQKALT MLLSVPKDEN KIVSSPNEFF LPVYKSQDSE bmy_11895T0/1-443 KNEQDLAIQQ EHQEYQKALT MLLSVPKDEN KIVSSPNEFF LPVYKSKYSE BACU013150/1-595 KNEQDLAIQQ EHQEYQKALT MLLSVPKDEN KIVSSPNDFF LPVYKSKYSE 551 600 ENSP00000377176/1-599 GVIIQQVNDE TNLETSTLDE NHPSISDSLT DRETSVNVIE GDSDPEKVEI ENSBTAP00000040596/1-516 EVIIQQYLKR QGLSSNQ--- ---------- ---------- ---------- ENSTTRP00000012187/1-646 GVIIQQVNDE TNLGTSVWDE KNVSMSDSLL DQETSVNVIE GDKDNERVET bmy_11895T0/1-443 GIIIQQVNDE TNLRTSVWBE KNVSMSDSLL DQETSVNVIE GDSDNEKVET BACU013150/1-595 GVIIQQVNDE TNLGTSVRDE KNVSMSDSLL DQETSVNVIE GDSDNEKVET 601 650 ENSP00000377176/1-599 SNGLCGLNTS PSQSVQFSSV KGDNNHDMEL STLKIMEMSI EDCPLDV ENSBTAP00000040596/1-516 ---------- ---------- ---------- ---------- ------- ENSTTRP00000012187/1-646 SNELCCFSTA LSPSVQLCSV N-DGNQDMEG PTLKIMEMSI EDRSFDA bmy_11895T0/1-443 SNELCCFSTA LSPSVQLCSV K-DGNQDMEG PTLKIMEMSI ED----- BACU013150/1-595 SNELCCFSTA LSPSVQLCSV K-DGNQDMER PTLKIMEMSI ED-----