KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:45 2014 Check: 00 .. Name: ENSP00000252825/1-699 Len: 905 Check: 9973 Weight: 1.00 Name: ENSBTAP00000040660/1-871 Len: 905 Check: 8437 Weight: 1.00 Name: ENSTTRP00000016206/1-622 Len: 905 Check: 7909 Weight: 1.00 Name: bmy_06394T0/1-629 Len: 905 Check: 9349 Weight: 1.00 Name: BACU002205/1-623 Len: 905 Check: 4915 Weight: 1.00 // 1 50 ENSP00000252825/1-699 MGHHRPWLHA SVLWAGVASL LLPPAMTQQL RGDGLGFRNR NNSTGVAGLS ENSBTAP00000040660/1-871 MGLCGPWLHT SVLWAAVASL LLPPAMTQQL RGAGPGPSNW DDHAGASGSS ENSTTRP00000016206/1-622 MGHCGPWLHT FLLWAAVASL LLPTAVTQQL RGAGLGPSNW NDNAGASEPS bmy_06394T0/1-629 MGHCGPWLHT SLLWAAVVSL LLPTAVTQQL RGAGPGPSNW NNNAGASGPS BACU002205/1-623 MGHCGPWLHT SLLWAAVASL LLPTAVTQQL RGAGPGPSNW NNNAGASGPS 51 100 ENSP00000252825/1-699 EEASAELRHH LHSPRDHPDE NKDVSTENGH HFWSHPDREK EDEDVSKEYG ENSBTAP00000040660/1-871 EDVSGKSDH- ---HGGHGDE NRDVSTDNGH HFWGHGDHGE EDEDVSRES- ENSTTRP00000016206/1-622 EDASGKFGHP THSHRGHGDE NKDVSTESGH HFWGHGDHRE EDEDVSRES- bmy_06394T0/1-629 EDASGKFGHP THSHRGHGDE NKDVSTESGH HFWGHGDHRE EDEDVSRES- BACU002205/1-623 EDTSGKFGHP THSHRGHGDE NKDVSTESGH HFWGHGDHRE EDEDVSRES- 101 150 ENSP00000252825/1-699 HLLPGHRSQD HKVGDEGVSG EEVFAEHGGQ ARGHRGHGSE DTEDSAEHRH ENSBTAP00000040660/1-871 ---QGHRYQG REVGDENISD EEEYPEHAQQ AHGHRCHGNE DADDSAERGD ENSTTRP00000016206/1-622 ---QDHRYQG HTVGDENTSD EEEHTEHAQQ ARGHRSHGNE EADDSAEHGH bmy_06394T0/1-629 ---QDHRYQG PKVGDENISD EEEYTEHAQQ ARGHRSHGNE DADDSAEHGH BACU002205/1-623 ---QDHRYQG PKVGDENISD EEEYTEHAQQ ARGHRSHGNE DADDSAEHGH 151 200 ENSP00000252825/1-699 HLPSHRSHSH QDEDEDEVVS SEHH-HHILR HGHRGHDGED DEGEEEEEEE ENSBTAP00000040660/1-871 HLPSHGSQSH QDEEEEEVVS SEHHQHHIVR QAHRGHR--- ----EEEDED ENSTTRP00000016206/1-622 HFPSHRSHGR QD--EDEVVS SEHH-HHIVR HVHRGHG--- ----EEEDEE bmy_06394T0/1-629 HFPSHGSHGH QDEDEDEVVS SEHH-HHIVR HVHRGHG--- ----EEEDEE BACU002205/1-623 HFPSHGSHGH EDEDEDEVVS SEHH-HHIVR HVHRGHG--- ----EEEDEE 201 250 ENSP00000252825/1-699 EEEEEASTEY G--------- ---------- ---------- ---------- ENSBTAP00000040660/1-871 EEEENVSPGY GQQVHRRQDR GEQKDGNGSE EHDRGHGPSH RHGGHKDDDD ENSTTRP00000016206/1-622 EEEEDVSTEY G--------- ---------- ---------- ---------- bmy_06394T0/1-629 EEEEDVSTEY G--------- ---------- ---------- ---------- BACU002205/1-623 EEEEDVSTEY G--------- ---------- ---------- ---------- 251 300 ENSP00000252825/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040660/1-871 GGDAVSTEHR HQVHRHRDHG EEEEEEDDSE EHHHHHSPSH RHRGHEEEDD ENSTTRP00000016206/1-622 ---------- ---------- ---------- ---------- ---------- bmy_06394T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU002205/1-623 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000252825/1-699 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040660/1-871 DEDDIVSTEH RHQVHRHRNH GEEEEEDDSE EHHHHHSPSH RHRGHEEEED ENSTTRP00000016206/1-622 ---------- ---------- ---------- ---------- ---------- bmy_06394T0/1-629 ---------- ---------- ---------- ---------- ---------- BACU002205/1-623 ---------- ---------- ---------- ---------- ---------- 351 400 ENSP00000252825/1-699 ---------- --HQAHRHRG HGSEEDEDVS DGH-HHHGPS HRHQGHEEDD ENSBTAP00000040660/1-871 DHEDDIVSTE HRHQVHRHRD HGEEEEEAVS EEHPHHHSPS YRHRGHEEDD ENSTTRP00000016206/1-622 ---------- --HQVHRHQD HGKEKDEDVS DEH-PHHGPS HRHRGHEEEE bmy_06394T0/1-629 ---------- --HQVHRHRD HGKEKDEDVS DEH-HHHGPS HRHRGREEEE BACU002205/1-623 ---------- --HQVHRHRD HGKEKDEDVS DEH-HHHGPS HRHRGREEEE 401 450 ENSP00000252825/1-699 DDDDDD---- ---------- ---------- ---------- ---------D ENSBTAP00000040660/1-871 DEDEDDVVST EHRHQVHRHR DHGEEEEEDD SEEHHHHHSP SHRHRGHEEE ENSTTRP00000016206/1-622 DD-------- ---------- ---------- ---------- ---------- bmy_06394T0/1-629 EEEEED---- ---------- ---------- ---------- ---------- BACU002205/1-623 EEEDD----- ---------- ---------- ---------- ---------- 451 500 ENSP00000252825/1-699 DDDDDDDVSI EYRHQAHRHQ GHGIEEDEDV SDG-HHHRDP SHRHRSHEED ENSBTAP00000040660/1-871 DDDEDDIVST EHRHQVHRHQ DHGEEEEEDD SEEHHHHHSP SHRHQGHEEE ENSTTRP00000016206/1-622 ----DDDVST EYIHQTHRSQ GHGKEDNEDV SDE-HHHHIP SHRHQGHRD- bmy_06394T0/1-629 ----DDDVST EYIHQTHRSQ GHGKEDNEDV SDE-HHHHIP SHRHQGHRD- BACU002205/1-623 ----DDDVST EYIHQTHRSQ GHGKEDNEDV SDE-HHHHIP SHRHQGHRD- 501 550 ENSP00000252825/1-699 DNDDDD--VS TEYGHQAHRH QDHRKEEVEA VSGEHHHHVP DHRHQGHRDE ENSBTAP00000040660/1-871 DDEDEDDVVS TEHRHQVHRH RDHGEEEDED DSEEHHH--- ---HHGGNKE ENSTTRP00000016206/1-622 ---------- ---------- ---------- ---------- --------KE bmy_06394T0/1-629 ---------- ---------- ---------- ---------- --------KE BACU002205/1-623 ---------- ---------- ---------- ---------- --------KE 551 600 ENSP00000252825/1-699 EEDEDVSTER WHQGPQHVHH GLVDEEEEE- -EEITVQFGH YVASHQPRGH ENSBTAP00000040660/1-871 DEDEDLSTEH WHQAPRHTHH GLGDEEEEEE KEEITVKFSH HVASPQPQGH ENSTTRP00000016206/1-622 DEDEDVSTEH WHQVPRHTHH GLGDNE---- -EEITVKFSH HVASHQPQGH bmy_06394T0/1-629 DEDEDVSTEH WHQVPRHTHH GLGDDEEEDE -EEITVKFSH HVASHQPQGH BACU002205/1-623 DEDEDVSTEH WHQVPRHTHH GLGDDEEEDE -EEITVKFSH HVASHQPQGH 601 650 ENSP00000252825/1-699 KS-DEEDFQD EYKTEVPHHH HHRVPREEDE EVSAELGHQA PSHR-QSHQD ENSBTAP00000040660/1-871 KSAKEEDFPE DYKKAVPGHD HQGVPKEEDE DIPARLGHQA PSHRQQDHRD ENSTTRP00000016206/1-622 KSTKEEDFPE EHERAVHGHH HHGVPKEEDE DTSAKLGHQA PSHRQQSHRD bmy_06394T0/1-629 KSAEEEDFPE EYERAVPGHH HHGVPKEEDE DISAKLGHQA PSHRQQSHRD BACU002205/1-623 KSAEEEDFPE EYERAVPGHH HRGVPKEEDE DISAKLGHQA PSHRQQSHRD 651 700 ENSP00000252825/1-699 EETGHGQRGS IK-EMSHHPP GHTVVKDRSH LRKDDSEE-E KEKEEDPGSH ENSBTAP00000040660/1-871 EGTGH--RGS IKEEMSPQSP EHIGVKDRSH LRESDSEEDE EEKEEDHSSH ENSTTRP00000016206/1-622 KGTGH--RGS IKEETNHQSP EYVGVKDRSH LRESDSEEEE EEKEEDHSSH bmy_06394T0/1-629 KGTGH--RGS IKEETSHQPP EHMGVKDRSH LRESDSEEEE EEREEDHSSH BACU002205/1-623 KGTGH--RGS IKEETSHQPP EHMGVKDRSH LKENDSEEEE EEKEEDHSSH 701 750 ENSP00000252825/1-699 EEDDESSEQG EKGTHHGSR- DQEDEEDEEE GHGLSLNQEE EEEEDKEEEE ENSBTAP00000040660/1-871 EEANEGSEEG ED-TRHGSLD DQEDEEDEEE GHGLSLSQ-- -------EEE ENSTTRP00000016206/1-622 EDDDEGSEEG GEGTHHGSL- DQEDEEDKEE GHGLSLSQEE E------EEE bmy_06394T0/1-629 EEDDEGSEEG GEGTHHGSL- DQEDEEDKEE GHGLSLSQ-- -------EEE BACU002205/1-623 EEDDEGSEEG GEGTHHGSL- DQEDEEDKEE GHGLSLSQEE EEE---EEEE 751 800 ENSP00000252825/1-699 EEEDEERREE RAEVGAPLSP DHSEEEEEEE EGLEEDEPRF TIIPNPLDRR ENSBTAP00000040660/1-871 EEEKEEKRGE RAKVWVPLNQ DH-QEEDKEE VGLEEDELPF TIIPNPLTRK ENSTTRP00000016206/1-622 EEEEEERREE RAEVWVPLSQ DH-QEEEDEE EGLEEDELPF TIIPNPLARR bmy_06394T0/1-629 EEEKDDRREE RAEVWVPLSQ DH-QEEEDEE EGLEEDELPF TIIPNPLARR BACU002205/1-623 EEEKEERREE RAEVWVPLSQ DH-QKEEDEE EGLEEDELPF TIIPNPLARR 801 850 ENSP00000252825/1-699 EEAGGASSEE ESGEDTGPQD AQEYGNYQPG SLCGYCSFCN RCTECESCHC ENSBTAP00000040660/1-871 EVSGGASSEE ESGEDKGQQD AQEYGNYQPG SLCGYCSFCN RCTECENCHC ENSTTRP00000016206/1-622 EVSGGASSEE ESGEDMDQQD AQEYGNYQPG SLCGYCSICN RCTECENCHC bmy_06394T0/1-629 EVSGGASSEE ESGEDMDQQD AQEYGNYQPG SLCAYCSFCN RCTECENCHC BACU002205/1-623 EVSGGASSEE ESSEDTDQQD AQEYGNYQPG SLCGYCSFCN RCTECENCHC 851 900 ENSP00000252825/1-699 DEENMGEHCD QCQHCQFCYL CPLVCETVCA PGSYVDYFSS SLYQALADML ENSBTAP00000040660/1-871 DEENMGEHCD QCQHCQFCYL CPLVCETLCS PGSYVDYFSS SLYQALADML ENSTTRP00000016206/1-622 DEENMGEHCD QCQHCQFCYL CPLLCETVCT PGSYVDYFSS SLYQALADML bmy_06394T0/1-629 DEENMGEHCD QCQHCQFCYL CPLVCETVCT PGSYVDYFSS SLYQALADML BACU002205/1-623 DEENMGEHCD QCQHCQFCYL CPLVCETVCT PGSYVDYFSS SLYQ------ 901 950 ENSP00000252825/1-699 ETPEP ENSBTAP00000040660/1-871 ETPEP ENSTTRP00000016206/1-622 ETPKP bmy_06394T0/1-629 ETPEL BACU002205/1-623 -----