KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:46 2014 Check: 00 .. Name: ENSTTRP00000011510/1-790 Len: 796 Check: 4408 Weight: 1.00 Name: ENSBTAP00000040664/1-774 Len: 796 Check: 4087 Weight: 1.00 Name: ENSP00000238647/1-796 Len: 796 Check: 655 Weight: 1.00 Name: bmy_03498T0/1-776 Len: 796 Check: 7538 Weight: 1.00 Name: BACU010838/1-735 Len: 796 Check: 3306 Weight: 1.00 // 1 50 ENSTTRP00000011510/1-790 MSAAQVSSSR RQSCYLCDLP RMPWAMIWDF SEPVCRGCVN YEGADRIEFV ENSBTAP00000040664/1-774 MSAAQVSSSR RQSCYLCDLP RMPWAMIWDF SEPVCRGCVN YEGADRIEFV ENSP00000238647/1-796 MSAAQVSSSR RQSCYLCDLP RMPWAMIWDF SEPVCRGCVN YEGADRIEFV bmy_03498T0/1-776 MSAAQVSSSR RQSCYLCDLP RMPWAMIWDF SEPVCRGCVN YEGADRIEFV BACU010838/1-735 MSAAQVSSSR RQSCYLCDLP RMPWAMIWDF SEPVCRGCVN YEGADRIEFV 51 100 ENSTTRP00000011510/1-790 IETARQLKRA HGCFQDGRSP GPPPPVGVKT VALSAKEAAA ADAVALAAA- ENSBTAP00000040664/1-774 IETARQLKRA HGCFQDGRSP GPPPPVGVKT VALSAKEAAA AAAAAAAA-- ENSP00000238647/1-796 IETARQLKRA HGCFQDGRSP GPPPPVGVKT VALSAKEAAA AAAAAAAAAA bmy_03498T0/1-776 IETARQLKRA HGCFQDGRSP GPPPPVGVKT VALSAKEAAA AAAAAAAA-- BACU010838/1-735 IETARQLKRA HGCFQDGRSP GPPPP----- ---------- ---------- 101 150 ENSTTRP00000011510/1-790 -----ELRPM HRLKKQQKYQ RNKQXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000040664/1-774 ---------- ----AQQQQQ QQQQQQQLNH VDGSSKAAVL AAPSGLERYG ENSP00000238647/1-796 AAQQQQQQQQ QQQQQQQQQQ QQQQQQQLNH VDGSSKPAVL AAPSGLERYG bmy_03498T0/1-776 ---------- --------QQ QQQQQQQLNH VDGSSKPAVL AAPSGLERYG BACU010838/1-735 ---------- ---------- ---------- ------PAVL AAPSGLERYG 151 200 ENSTTRP00000011510/1-790 XXXXXXXXXX XXAAVEQRSR FEYPPPPVSL GSSSHSARLP NGLGGPNGFP ENSBTAP00000040664/1-774 LS------AA AAAAVEQRSR FEYPPPPVSL GSSSHAARLP NGLGGPNGFP ENSP00000238647/1-796 LSAAAAAAAA AAAAVEQRSR FEYPPPPVSL GSSSHTARLP NGLGGPNGFP bmy_03498T0/1-776 LSAAAAAAAA AAAAVEQRSR FEYPPPPVSL GSSSHSARLP NGLGGPNGFP BACU010838/1-735 LSAAAAAAAA AAAAVEQRSR FEYPPPPVSL GSSSHSARLP NGLGGPNGFP 201 250 ENSTTRP00000011510/1-790 KPTPEEGPPE LNRQSPNSSS AAASVASRRG THGGLVTGLP NPGGGGGPQL ENSBTAP00000040664/1-774 KPNPEEGPPE LNRQSPNSSS AAASVASRRG THGGLVAGLP NPGGGGGPQL ENSP00000238647/1-796 KPTPEEGPPE LNRQSPNSSS AAASVASRRG THGGLVTGLP NPGGGGGPQL bmy_03498T0/1-776 KPTPEEGPPE LNRQSPNSSS AAASVASRRG THGGLVTGLP NPGGGGGPQL BACU010838/1-735 KPTPEEGPPE LNRQSPNSSS AAASVASRRG THGGLVTGLP NPGGGGGPQL 251 300 ENSTTRP00000011510/1-790 TVPPNLLPQT LLNGPASAPV LPPPPPHGLG SRGPPTPAPP GAPGGPACLG ENSBTAP00000040664/1-774 TVPPNLLPQT LLNGPASAPV LPPPPPHALG SRGPPTPAPP GAPGGPACLG ENSP00000238647/1-796 TVPPNLLPQT LLNGPASAAV LPPPPPHALG SRGPPTPAPP GAPGGPACLG bmy_03498T0/1-776 TVPPNLLPQT LLNGPASAPV LPPPPPHGLG SRGPPTPAPP GAPGGPACLG BACU010838/1-735 TVPPNLLPQT LLNGPASAPV LPPPPPHGLG SRGPPTPAPP GAPGGPACLG 301 350 ENSTTRP00000011510/1-790 GGPGVSAASS SASSSTSSSV AEVGGGAGGK RPGSVSSTDQ ERELKEKQRN ENSBTAP00000040664/1-774 GAPGVSVASS SAASSTSSSV AEVGVGAGGK RPGSVSSTDQ ERELKEKQRN ENSP00000238647/1-796 GTPGVSATSS SASSSTSSSV AEVGVGAGGK RPGSVSSTDQ ERELKEKQRN bmy_03498T0/1-776 GGPGVSAASS SASSSTSSSV AEVGGGAGGK RPGSVSSTDQ ERELKEKQRN BACU010838/1-735 GGPGVSAASS SASSSTSSSV AEVGGGAGGK RPGSVSSTDQ ERELKEKQRN 351 400 ENSTTRP00000011510/1-790 AEALAELSES LRNRAEEWAT KPKMVRDTLL TLAGCTPYEV RFKKDHSLLG ENSBTAP00000040664/1-774 AEALAELSES LRNRAEEWAN KPKMVRDTLL TLAGCTPYEV RFKKDHSLLG ENSP00000238647/1-796 AEALAELSES LRNRAEEWAS KPKMVRDTLL TLAGCTPYEV RFKKDHSLLG bmy_03498T0/1-776 AEALAELSES LRNRAEEWAN KPKMVRDTLL TLAGCTPYEV RFKKDHSLLG BACU010838/1-735 AEALAELSES LRNRAEEWAN KPKMVRDTLL TLAGCTPYEV RFKKDHSLLG 401 450 ENSTTRP00000011510/1-790 RVFAFDAVSK PGMDYELKLF IEYPTGSGNV YSSASGVAKQ MYQDCMKDFG ENSBTAP00000040664/1-774 RVFAFDAVSK PGMDYELKLF IEYPTGSGNV YSSASGVAKQ MYQDCMKDFG ENSP00000238647/1-796 RVFAFDAVSK PGMDYELKLF IEYPTGSGNV YSSASGVAKQ MYQDCMKDFG bmy_03498T0/1-776 RVFAFDAVSK PGMDYELKLF IEYPTGSGNV YSSASGVAKQ MYQDCMKDFG BACU010838/1-735 RVFAFDAVSK PGMDYELKLF IEYPTGSGNV YSSASGVAKQ MYQDCMKDFG 451 500 ENSTTRP00000011510/1-790 RGLSSGFKYL EYEKKHGSGD WRLLGDLLPE AVRFFKEGVP GADMLPQPYL ENSBTAP00000040664/1-774 RGLSSGFKYL EYEKKHGSGD WRLLGDLLPE AVRFFKEGVP GADMLPQPYL ENSP00000238647/1-796 RGLSSGFKYL EYEKKHGSGD WRLLGDLLPE AVRFFKEGVP GADMLPQPYL bmy_03498T0/1-776 RGLSSGFKYL EYEKKHGSGD WRLLGDLLPE AVRFFKEGVP GADMLPQPYL BACU010838/1-735 RGLSSGFKYL EYEKKHGSGD WRLLGDLLPE AVRFFKEGVP GADMLPQPYL 501 550 ENSTTRP00000011510/1-790 DASCPMLPTA LVSLSRAPSA PPGTGALPPA APSGRGAAAS LRKRKASPEP ENSBTAP00000040664/1-774 DASCPMLPTA LVSLSRAPSA PPGTGALPPA TPSGRGAAAS LRKRKASPEP ENSP00000238647/1-796 DASCPMLPTA LVSLSRAPSA PPGTGALPPA APSGRGAAAS LRKRKASPEP bmy_03498T0/1-776 DASCPMLPTA LVSLSRAPSA PPGTGALPPA APSGRGAAAS LRKRKASPEP BACU010838/1-735 DASCPMLPTA LVSLSRAPSA PPGTGALPPA APSGRGAAAS LRKRKASPEP 551 600 ENSTTRP00000011510/1-790 PDSAEGALKL GEEQQRQQWM ANQSEALKLT MSAGGFAAPG HAAGGPPPPP ENSBTAP00000040664/1-774 PDSAEGALKL GEEQQRQQWM ANQSEALKLT MSAGGFAAPG HAAGGPPPPP ENSP00000238647/1-796 PDSAEGALKL GEEQQRQQWM ANQSEALKLT MSAGGFAAPG HAAGGPPPPP bmy_03498T0/1-776 PDSAEGALKL GEEQQRQQWM ANQSEALKLT MSAGGFAAPG HAAGGPPPPP BACU010838/1-735 PDSAEGALKL GEEQQRQQWM ANQSEALKLT MSAGGFAAPG HAAGGPPPPP 601 650 ENSTTRP00000011510/1-790 PPLGPHSNRT TPPESAPQNG PSPMAALMSV ADTLGTAHSP KDGSSVHSTT ENSBTAP00000040664/1-774 PPLGPHSNRT TPPESAPQNG PSPMAALMSV ADTLGTAHSP KDGSSVHSTT ENSP00000238647/1-796 PPLGPHSNRT TPPESAPQNG PSPMAALMSV ADTLGTAHSP KDGSSVHSTT bmy_03498T0/1-776 PPLGPHSNRT TPPESAPQNG PSPMAALMSV ADTLGTAHSP KDGSSVHSTT BACU010838/1-735 PPLGPHSNRT TPPESAPQNG PSPMAALMSV ADTLGTAHSP KDGSSVHSTT 651 700 ENSTTRP00000011510/1-790 ASARRNSSSP VSPASVPGQR RLASRNGDLN LQVAPPPPST HPGMDQVHPQ ENSBTAP00000040664/1-774 ASARRNSSSP VSPASVPGQR RLTSRNGDLN LQVAPPPPST HPGMDQVHPQ ENSP00000238647/1-796 ASARRNSSSP VSPASVPGQR RLASRNGDLN LQVAPPPPSA HPGMDQVHPQ bmy_03498T0/1-776 ASARRNSSSP VSPASVPGQR RLASRNGDLN LQVAPPPPST HPGMDQVHPQ BACU010838/1-735 ASARRNSSSP VSPASVPGQR RLASRNGDLN LQVAPPPPST HPGMDQVHPQ 701 750 ENSTTRP00000011510/1-790 NIPDSPMANS GPLCCTICHE RLEDTHFVQC PSVPSHKFCF PCSRESIKAQ ENSBTAP00000040664/1-774 NIPDSPMANS GPLCCTICHE RLEDTHFVQC PSVPSHKFCF PCSRESIKAQ ENSP00000238647/1-796 NIPDSPMANS GPLCCTICHE RLEDTHFVQC PSVPSHKFCF PCSRESIKAQ bmy_03498T0/1-776 NIPDSPMANS GPLCCTICHE RLEDTHFVQC PSVPSHKFCF PCSRESIKAQ BACU010838/1-735 NIPDSPMANS GPLCCTICHE RLEDTHFVQC PSVPSHKFCF PCSRESIKAQ 751 800 ENSTTRP00000011510/1-790 GATGEVYCPS GEKCPLVGSN VPWAFMQGEI ATILAGDVKV KKERDP ENSBTAP00000040664/1-774 GATGEVYCPS GEKCPLVGSN VPWAFMQGEI ATILAGDVKV KKERDP ENSP00000238647/1-796 GATGEVYCPS GEKCPLVGSN VPWAFMQGEI ATILAGDVKV KKERDP bmy_03498T0/1-776 GATGEVYCPS GEKCPLVGSN VPWAFMQGEI ATILAGDVKV KKERDP BACU010838/1-735 GATGEVYCPS GEKCPLVGSN VPWAFMQGEI ATILAGDVKV KKERDP