KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:48 2014 Check: 00 .. Name: ENSP00000381823/1-1093 Len: 1104 Check: 8901 Weight: 1.00 Name: ENSBTAP00000040703/1-1099 Len: 1104 Check: 5134 Weight: 1.00 Name: bmy_03810T0/1-815 Len: 1104 Check: 3646 Weight: 1.00 Name: BACU004078/1-1097 Len: 1104 Check: 1798 Weight: 1.00 Name: ENSTTRP00000015989/1-1088 Len: 1104 Check: 6178 Weight: 1.00 // 1 50 ENSP00000381823/1-1093 MSQPGIPASG GAPASLQAQN GAALASGSPY TNGPVQNALL SSQESVSQGY ENSBTAP00000040703/1-1099 MSQPGIPASG GSSTGLQAQN GAASASGSPY TNGPVQNALM SSQVSVSQGY bmy_03810T0/1-815 MSQPGIPASG GAPIGLQAQN GAAWASGSPY TNG------- ---------- BACU004078/1-1097 MSQPGIPASG GAPIGLQAQN GAARASGSPY TNGPVQNALM SSQVSVSQGY ENSTTRP00000015989/1-1088 MSQPGIPASG GAPIGLQAQN GAARASGSPY TNGPVQNALM SSQVSVSQGY 51 100 ENSP00000381823/1-1093 NFQLPGSYPH PIPAKTLNPV SGQSNYGGS- --------QG SGQTLNRPPV ENSBTAP00000040703/1-1099 NSQLPGSYPH LIPAKTLNPV SGQSNSGGSQ TVSPLSNYQG PGQALYGPPV bmy_03810T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU004078/1-1097 NSQLPGSYPH LIPAKTLNPV PGQSNSGGSQ TVSPLSNYQG PGQTVYRPSV ENSTTRP00000015989/1-1088 NSQLPGSYPH LIPAKTLNPV SGQSNSGGS- --------QG PGQTVYRPSV 101 150 ENSP00000381823/1-1093 ASNPVTPSLH SGPAPRMPLP ASQNPATTPM PSSSFLPEAN LPPPLNWQYN ENSBTAP00000040703/1-1099 ASHPVTPSLH SGPSPQMPLP TSQNPAATPM PSGSFLPGAS VSSPSNWQYN bmy_03810T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU004078/1-1097 ASNPVTPSLR SGPVPQMPLP TSQNPAATPM PSGSFLPGAN IPPPLNWQYN ENSTTRP00000015989/1-1088 ASNPVTPSLR SGPVPQMPLP TSQNPAATPM PSGSFLPGAN IPPPLNWQYN 151 200 ENSP00000381823/1-1093 YPSTASQTNH CPRASSQPTV SGNTSLTTNH QYVSSGYPSL QNSFIKSGPS ENSBTAP00000040703/1-1099 Y---LSQTNH CPRASSQPTM TGNTNLMS-P QYVSSGDSSL QNNIIKSG-S bmy_03810T0/1-815 ---------- ---------- ---------- ---------- ---------S BACU004078/1-1097 Y---SSQTNH CPCASSQPTM SGNTNLTS-P QYVSSGDTSL QNNFIKSG-S ENSTTRP00000015989/1-1088 Y---SSQTNH CPRASSQPTM SGNANLTS-P QYVSSGDASL QNNFIKSG-S 201 250 ENSP00000381823/1-1093 VPPLVNPPLP TTFQPGAPHG PPPAGGPPPV RALTPLTSSY RDVPQPLFNS ENSBTAP00000040703/1-1099 ALPLVNPPLP TTFQPGAPLG PPPTGGPPPV RALTPQKLTP RTMPQPSFNS bmy_03810T0/1-815 APPLVNPPLP TTFQXGAPLG PPPTGGPPPX RALTPQKSTH RAVPQPTFNS BACU004078/1-1097 APPLVNPPLP TTFQPGAPLG PPPTGGPPPV RALTPQKSTH RAVPQPTFNS ENSTTRP00000015989/1-1088 APPLVNPPLP TTFQPGTPLG PPPTGAPPPV RALTPQKSTH RAVPQPTFNS 251 300 ENSP00000381823/1-1093 AVNQEGITSN TNNGSMVVHS SYDEIEGGGL LATPQLTNKN PKMSRSVGYS ENSBTAP00000040703/1-1099 TSNQEGIISN TNNGSMVVHN NYDEIEGGGF LATSQPTTKN PTMSRSVGYS bmy_03810T0/1-815 ASNQEGIIPN TNNGSMVVHN SYDEIEGGGF LATPQLTNKN PTMSRSVGYS BACU004078/1-1097 ASNQEGIIPN TNNGSMVVHN SYDEIEGGGF LATPQLTNKN PTMSRSVGYS ENSTTRP00000015989/1-1088 ASNQEGIIPN TNNGSMVVHN SYDEIEGGGF LATPQLTSKN PTMSRSVGYS 301 350 ENSP00000381823/1-1093 YPSLPPGYQN TTPPGAT--G VPPSSLNYPS GPQAFTQTPL GANHLTTSMS ENSBTAP00000040703/1-1099 YPSLPPGYQN TAPPSTTGAG LPPSSLNYPS GPQAFTQTPL GANHLTSSMS bmy_03810T0/1-815 YPSLPPGYQN TIPPSTT--G MPPSSLNYPS GPQAFTQTPL GANHLPASMS BACU004078/1-1097 YPSLPPGYQN AIPPSTT--R MPPSSLNYPS GPQAFTQTPL GANHLPASMS ENSTTRP00000015989/1-1088 YPSLPPGYQN TIPPSTT--G MPPSSLNYPS GPQAFTQTPL GANHLPASMS 351 400 ENSP00000381823/1-1093 GLSLQPEGLR VVNLLQERNM LPSTPLKPPV PNLHEDIQKL NCNPELFRCT ENSBTAP00000040703/1-1099 GLSLHPEGLR VINLLQERNM LPSTPLQPPV PNLHEDIQKL NCNPELFRCT bmy_03810T0/1-815 GLSLHPEGLR VINLLQERNM LPLTPLQPPV PNLHEDIQKL NCNPELFRCT BACU004078/1-1097 GLSLHPEGLR VINLLQERNM LPLTPLQPPV PNLHEDIQKL NCNPELFRCT ENSTTRP00000015989/1-1088 GLSLHPEGLW VINLLQERNM LPLTPLQPPV PNLHEDIQKL NCNPELFRCT 401 450 ENSP00000381823/1-1093 LTSIPQTQAL LNKAKLPLGL LLHPFKDLVQ LPVVTSSTIV RCRSCRTYIN ENSBTAP00000040703/1-1099 LTSIPQTQAL LNKAKLPLGL LLHPFKDLVQ LPVVTSSTIV RCRSCRTYIN bmy_03810T0/1-815 LTSIPQTQAL LNKAKLPLGL LLHPFKDLVQ LPVVTSSTIV RCRSCRTYIN BACU004078/1-1097 LTSIPQTQAL LNKAKLPLGL LLHPFKDLVQ LPVVTSSTIV RCRSCRTYIN ENSTTRP00000015989/1-1088 LTSIPQTQAL LNKAKLPLGL LLHPFKDLVQ LPVVTSSTIV RCRSCRTYIN 451 500 ENSP00000381823/1-1093 PFVSFLDQRR WKCNLCYRVN DVPEEFLYNP LTRVYGEPHR RPEVQNATIE ENSBTAP00000040703/1-1099 PFVSFLDQRR WKCNLCYRVN DVPEEFMYNP LTRVYGEPHR RPEVQNATIE bmy_03810T0/1-815 PFVSFLDQRR WKCNLCYRVN DVPEEFMYNP LTRVYGEPHR RPEVQNATIE BACU004078/1-1097 PFVSFLDQRR WKCNLCYRVN DVPEEFMYNP LTRVYGEPHR RPEVQNATIE ENSTTRP00000015989/1-1088 PFVSFLDQRR WKCNLCYRVN DVPEEFMYNP LTRVYGEPHR RPEVQNATIE 501 550 ENSP00000381823/1-1093 FMAPSEYMLR PPQPPVYLFV FDVSHNAVET GYLNSVCQSL LDNLDLLPGN ENSBTAP00000040703/1-1099 FMAPSEYMLR PPQPPVYLFV FDVSHNAIET GYLNSVCQSL LDNLDLLPGN bmy_03810T0/1-815 FMAPSEYMLR PPQPPVYLFV FDVSHNAVET GYLNSVCQSL LDNLDLLPGN BACU004078/1-1097 FMAPSEYMLR PPQPPVYLFV FDVSHNAVET GYLNSVCQGL LDNLDLLPGN ENSTTRP00000015989/1-1088 FMAPSEYMLR PPQPPVYLFV FDVSHNAVET GYLNSVCQSL LDNLDLLPGN 551 600 ENSP00000381823/1-1093 TRTKIGFITF DSTIHFYGLQ ESLSQPQMLI VSDIEDVFIP MPENLLVNLN ENSBTAP00000040703/1-1099 TRTKIGFITF DSTIHFYSLQ EGLSQPQMLI VSDIEDVFIP MPENLLVNLN bmy_03810T0/1-815 TRTKIGFITF DSTIHFYSLQ EGLSQPQMLI VSDIEDVFIP MPENLLVNLN BACU004078/1-1097 TRTKIGFITF DSTIHFYSLQ EGLSQPQMLI VSDIEDVFIP MPENLLVNLN ENSTTRP00000015989/1-1088 TRTKIGFITF DSTIHFYSLQ EGLSQPQMLI VSDIEDVFIP MPENLLVNLN 601 650 ENSP00000381823/1-1093 ESKELVQDLL KTLPQMFTKT LETQSALGPA LQAAFKLMSP TGGRMSVFQT ENSBTAP00000040703/1-1099 ESKELVQDLL KTLPQMFTKT LETQSALGPA LQAAFKLMSP TGGRMSVFQT bmy_03810T0/1-815 ESKELVQDLL KTLPQMFTKT LETQSALGPA LQAAFKLMSP TGGRMSVFQT BACU004078/1-1097 ESKELVQDLL KTLPQMFTKT LETQSALGPA LQAAFKLMSP TGGRMSVFQT ENSTTRP00000015989/1-1088 ESKELVQDLL KTLPQMFTKT LETQSALGPA LQAAFKLMSP TGGRMSVFQT 651 700 ENSP00000381823/1-1093 QLPTLGVGAL KPREEPNHRS SAKDIHMTPS TDFYKKLALD CSGQQVAVDL ENSBTAP00000040703/1-1099 QLPTLGVGAL KPREEPNQRS SAKEIHLTPS TDFYKKLALD CSGQQVAVDL bmy_03810T0/1-815 QLPTLGVGAL KPREEPNQRS SAKEIHLTPS TDFYKKLALD CSGQQVAVDL BACU004078/1-1097 QLPTLGVGAL KPREEPNQRS SAKEIHLTPS TDFYKKLALD CSGQQVAVDL ENSTTRP00000015989/1-1088 QLPTLGVGAL KPREEPNQRS SAKEIHLTPS TDFYKKLALD CSGQQVAVDL 701 750 ENSP00000381823/1-1093 FLLSGQYSDL ASLGCISRYS AGSVYYYPSY HHQHNPVQVQ KLQKELQRYL ENSBTAP00000040703/1-1099 FLLSGQYSDL ASLGCISRYS AGSVYYYPSY HHQHNPIQVQ KLEKELQRYL bmy_03810T0/1-815 FLLSGQYSDL ASLGCISRYS AGSVYYYPSY HHQHNPVQVQ KLQKELQRYL BACU004078/1-1097 FLLSGQYSDL ASLGCISRYS AGSVYYYPSY HHQHNPVQVQ KLQKELQRYL ENSTTRP00000015989/1-1088 FLLSGQYSDL ASLGCISRYS AGSVYYYPSY HHQHNPVQVQ KLQKELQRYL 751 800 ENSP00000381823/1-1093 TRKIGFEAVM RIRCTKGLSI HTFHGNFFVR STDLLSLPNV NPDAGYAVQM ENSBTAP00000040703/1-1099 TRKIGFEAVM RIRCTKGLSI HTFHGNFFVR STDLLSLPNV NPDAGYAVQM bmy_03810T0/1-815 TRKIGFEAVM RIRCTKGLSI HTFHGNFFVR STDLLSLPNV NPDAG----- BACU004078/1-1097 TRKIGFEAVM RIRCTKGLSI HTFHGNFFVR STDLLSLPNV NPDAGYAVQM ENSTTRP00000015989/1-1088 TRKIGFEAVM RIRCTKGLSI HTFHGNFFVR STDLLSLPNV NPDAGYAVQM 801 850 ENSP00000381823/1-1093 SVEESLTDTQ LVSFQSALLY TSSKGERRIR VHTLCLPVVS TLNDVFLGAD ENSBTAP00000040703/1-1099 SVEESLTDTQ LVSFQSALLY TSSKGERRIR VHTLCLPVVS TLNEVFLGAD bmy_03810T0/1-815 ---------A VPHYHLCVL- --SKGERRIR VHTLCLPVVS TLNEVFLGAD BACU004078/1-1097 SVEESLTDTQ LVSFQSALLY TSSKGERRIR VHTLCLPVVS TLNEVFLGAD ENSTTRP00000015989/1-1088 SVEESLNDTQ LVSFQSALLY TSSKGERRIR VHTLCLPVVS TLNEVFLGAD 851 900 ENSP00000381823/1-1093 VQAISGLLAN MAVDRSMTAS LSDARDALVN AVIDSLSAYR SSVLSNQQPG ENSBTAP00000040703/1-1099 VQAISGLLAN MAVDRSVTAS LSDARDALVN AVIDSLSAYR SSALSNQQPG bmy_03810T0/1-815 VQAISGLLAN MAVDRSVTAS LSDARDALVN AVIDSLSAYR SSVLSNQQHG BACU004078/1-1097 VQAISGLLAN MAVDRSVTAS LSDARDALVN AVIDSLSAYR SSVLSNQQHG ENSTTRP00000015989/1-1088 VQAISGLLAN MAVDRSVTAS LSDARDALVN AVIDSLSAYR SSVLSNQQHG 901 950 ENSP00000381823/1-1093 LMVPFSLRLF PLFVLALLKQ KSFQTGTNAR LDERIFAMCQ VKNQPLVYLM ENSBTAP00000040703/1-1099 LMVPFSLRLF PLFVLALLKQ KSFQTGTNAR LDERIFAMCQ VKNQPLVYLM bmy_03810T0/1-815 LMVPFSLRLF PLFVLALLKQ KSFQTGTNAC LDERIFAMCQ VKNQPLVYLM BACU004078/1-1097 LMVPFSLRLF PLFVLALLKQ KSFQTGTNAC LDERIFAMCQ VKNQPLVYLM ENSTTRP00000015989/1-1088 LMVPFSLRLF PLFVLALLKQ KSFQTGTNAC LDERIFAMCQ VKNQPLVYLM 951 1000 ENSP00000381823/1-1093 LTTHPSLYRV DNLSDEGALN ISDRTIPQPP ILQLSVEKLS RDGAFLMDAG ENSBTAP00000040703/1-1099 LTTHPSLYRV DNLSDEGAIS INDRTIPQPP ILQLSVEKLS RDGAFLMDAG bmy_03810T0/1-815 LTTHPSLYRV DNLSDE---- ---------- ---------- ---------- BACU004078/1-1097 LTTHPSLYRV DNLSDEGAVN INDRTIPQPP ILQLSVEKLS RDGAFLMDAG ENSTTRP00000015989/1-1088 LTTHPSLYRV DNLSDEGAIN INDRTIPQPP ILQLSVEKLS RDGAFLMDAG 1001 1050 ENSP00000381823/1-1093 SVLMLWVGKN CTQNFLSQVL GVQNYASIPQ PMTDLPELDT PESARIIAFI ENSBTAP00000040703/1-1099 SVLMLWVGRN CGQNFLSQVL GVENYALIPQ TMTDLPELDT PESARTIAFI bmy_03810T0/1-815 -VLMLWVGRN CGQNFLSQVL GVENYALIPQ TMVRL----- ---------- BACU004078/1-1097 SVLMLWVGRN CGQNFLSQVL GVENYALIPP TMTDLPELDT PESARTIAFI ENSTTRP00000015989/1-1088 SVLMLWVGRN CRQNFLSQVL GVENYALIPQ TMTDLPELDT PESARTIAFI 1051 1100 ENSP00000381823/1-1093 SWLREQRPFF PILYVIRDES PMKANFLQNM IEDRTESALS YYEFLLHIQQ ENSBTAP00000040703/1-1099 SWLREQRPFY PILYVIRDES PMKANFLQNM VEDRTESALS YYEFLLHIQQ bmy_03810T0/1-815 ---------- ---------- ---------- ---------- ---------- BACU004078/1-1097 SWLREQRPFY PILYVIRDES PMKANFLQNM VEDRTESALS YYEFLLHIQQ ENSTTRP00000015989/1-1088 SWLREQRPFY PILYVIRDES PMKANFLQNM VEDRTESALS YYEFLLHIQQ 1101 1150 ENSP00000381823/1-1093 QVNK ENSBTAP00000040703/1-1099 QVNK bmy_03810T0/1-815 ---- BACU004078/1-1097 QVNK ENSTTRP00000015989/1-1088 QVNK