KEY:
    ENSP* - Homo sapiens (Human)
    ENSBTA* - Bos taurus (Cow)
    ENSTTR* - Tursiops truncatus (Dolphin)
    bmy_* - Balaena mysticetus (Bowhead whale)
    BACU* - Balaenoptera acutorostrata (Minke whale)

Copy from below the line for a valid .msf file.

----------------------------------------------------------------------------------
                
NoName   MSF: 5  Type: P  Thu May 15 17:50:50 2014  Check: 00 ..

 Name: ENSBTAP00000040714/1-201  Len:    214  Check:  5721  Weight:  1.00
 Name: ENSP00000064571/1-201     Len:    214  Check:  6736  Weight:  1.00
 Name: ENSTTRP00000000122/1-201  Len:    214  Check:  6480  Weight:  1.00
 Name: bmy_00249T0/1-139         Len:    214  Check:  9882  Weight:  1.00
 Name: BACU011307/1-214          Len:    214  Check:  2163  Weight:  1.00

//


                          1                                                   50
ENSBTAP00000040714/1-201  MGPRRRAPAA LPALLLALAL PGLRVWAQND TEPIVLEGKC LVVCDSNPAT 
ENSP00000064571/1-201     MGSGRRALSA VPAVLLVLTL PGLPVWAQND TEPIVLEGKC LVVCDSNPAT 
ENSTTRP00000000122/1-201  MGAGGRALSV VPAVLLALTL PGLPVWAQND TEPIVLEGKC LVVCDSNPAT 
bmy_00249T0/1-139         MGSGGRALSV VPAVLLALTL PGLPVWAQND TEPIVLEGKC LVVCDSNPAT 
BACU011307/1-214          MGSGGRALSV VPAVLLALTL PGLPVWAQND TEPIVLEGKC LVVCDSNPAT 


                          51                                                 100
ENSBTAP00000040714/1-201  DSKGSSSSPL GISVRAANSK VAFSAVRSTN HEPSEMSNKT RIIYFDQILV 
ENSP00000064571/1-201     DSKGSSSSPL GISVRAANSK VAFSAVRSTN HEPSEMSNKT RIIYFDQILV 
ENSTTRP00000000122/1-201  DSKGSSSSPL GISVRAANSK VAFSAVRSTN HEPSEMSNKT RIIYFDQILV 
bmy_00249T0/1-139         DSKGSSSSPL GISVRAANSK VAFSAVRSTN HEPSEMSNKT RIIYFDQILV 
BACU011307/1-214          DSKGSSSSPL GISVRAANSK VAFSAVRSTN HEPSEMSNKT RIIYFDQILV 


                          101                                                150
ENSBTAP00000040714/1-201  NVGNFFTLES VFVAPRKGIY SFSFHVIKVY QSQTIQVNLM LNGKPVISAF 
ENSP00000064571/1-201     NVGNFFTLES VFVAPRKGIY SFSFHVIKVY QSQTIQVNLM LNGKPVISAF 
ENSTTRP00000000122/1-201  NVGNFFTLES VFVAPRKGIY SFSFHVIKVY QSQTIQVNLM LNGKPVISAF 
bmy_00249T0/1-139         NVGNFFTLES VFVAPRKGIY SFSFHVIKVY QSQTIQ---- ---------- 
BACU011307/1-214          NVGNFFTLES VFVAPRKGIY SFSFHVIKVY QSQTIQVNLM LNGKPVISAF 


                          151                                                200
ENSBTAP00000040714/1-201  AGDKDVTREA ATNGVLLYLD KEDKVYLKLE KGN------- ------LVGG 
ENSP00000064571/1-201     AGDKDVTREA ATNGVLLYLD KEDKVYLKLE KGN------- ------LVGG 
ENSTTRP00000000122/1-201  AGDKDVTREA ATNGVLLYLD KEDKVYLKLE KGN------- ------LVGG 
bmy_00249T0/1-139         ---------- ---------- ---------N KG-------- ---------- 
BACU011307/1-214          AGDKDVTREA ATNGVLLYLD KEDKVYLKLE KGEGRPTPEF LEDHFLIIGL 


                          201                                                250
ENSBTAP00000040714/1-201  WQYSTFSGFL VFPL 
ENSP00000064571/1-201     WQYSTFSGFL VFPL 
ENSTTRP00000000122/1-201  WQYSTFSGFL VFPL 
bmy_00249T0/1-139         ---------- ---- 
BACU011307/1-214          MSFLGFSWVN MDSL