KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:51 2014 Check: 00 .. Name: ENSP00000404220/1-562 Len: 1157 Check: 3485 Weight: 1.00 Name: ENSBTAP00000040719/1-525 Len: 1157 Check: 6410 Weight: 1.00 Name: bmy_06386T0/1-658 Len: 1157 Check: 8676 Weight: 1.00 Name: BACU002209/1-1059 Len: 1157 Check: 7356 Weight: 1.00 Name: ENSTTRP00000005094/1-564 Len: 1157 Check: 1802 Weight: 1.00 // 1 50 ENSP00000404220/1-562 ---------- ---------- ---------- -------MDL PEGPVGGPTA ENSBTAP00000040719/1-525 ---------- ---------- ---------- -------MDM PEDQAGGPTA bmy_06386T0/1-658 MRGLTGSLEE AGPFSVPPSD GGELLVSPAA AEQRGWPMDL PESQAGGPAA BACU002209/1-1059 MRGLTGSLEE AGPFSVPPSD GGELLASPAA AEQRGWPMDL PESQAGSPAA ENSTTRP00000005094/1-564 ---------- ---------- ---------- -------MDL PESQAGGPAA 51 100 ENSP00000404220/1-562 EMYLRERPEE ARLGMP--VS LEEQILNSTF EACDPQRTGT VAVAQVLAYL ENSBTAP00000040719/1-525 KMYLWDQAED RSLGTL--LS LEEQILNSTF EACDPQRTGT VAVTHLLAYL bmy_06386T0/1-658 EMYLWDQPEE GSLGTGTLLS LEEQVLNSTF EACDPQRTGT VAVTHVLAYL BACU002209/1-1059 EMYLWDQPEE GSLGTGTLLS LEEQILNSTF EACDPQRTGT VAVTHVLAYL ENSTTRP00000005094/1-564 EVYLSDQPEE GSLGTP--LS LEEQILNSTF EACDPQRTGT VAVTHVLAYL 101 150 ENSP00000404220/1-562 EAVTGQGPQD ARLQTLANSL DPNGEGPKAT VDLDTFLVVM RDWIAACQLH ENSBTAP00000040719/1-525 EAVTGRGPQD ARLQTLACSL DPSGEGPQAT VDLDTFLVVM RDWITACQLD bmy_06386T0/1-658 EAVTGRGPQD ARLQTLACSL DPNGEGPQAT VDLDTFLVIM RDWIAACQLD BACU002209/1-1059 EAVTGRGPQD ARLQTLACSL DPNGEGPQAT VDLDTFLVIM RDWIAACQLD ENSTTRP00000005094/1-564 EAVTGRGPQD ARLQTLACSL DPNGEGPQAT VDLDTFLVIM RDWIAACQRD 151 200 ENSP00000404220/1-562 GGLELEEETA FQGALTSRQL PSGCPEAEEP ANLESFGGED PRPELQATAD ENSBTAP00000040719/1-525 GGLELEEETA FEGALTSQQL PSGCPEVEDP ANLESFGGED PRPELPATAD bmy_06386T0/1-658 GGLELEEETA FEGALTSQQL PSGEIVI--- YRMKQAGQG- -----PATAD BACU002209/1-1059 G--------- ---------- ---------- ---------- -----PATAN ENSTTRP00000005094/1-564 GGLELEEETA FEGTLTSQQL PSXXXXAEDP ANL-SFGGED PRHELPATAD 201 250 ENSP00000404220/1-562 LLSSLEDLEL SNRRLVGENA KLQRSMETAE EGSARLGEEI LALRKQLHST ENSBTAP00000040719/1-525 LLSSLEDLEL SNRRLAGENA KLQRSVETAE EGSARLGEEI SALRKQLRST bmy_06386T0/1-658 LLSSLEDLEL SNRRLAGENA KLQRSVETAE EGSLRLGEEI LALRKQLRST BACU002209/1-1059 LLSSLEDLEL SNRRLAGENA KLQRSVETAE EGSLRLGEEI LALRKQLRST ENSTTRP00000005094/1-564 LLSSLEDLEL SNRRLAGENA KLQRSVETAE EGSLHLGEEI LALRKRLRST 251 300 ENSP00000404220/1-562 QQALQFAKAM DEELEDLKTL ARSLEEQNRS LLAQARQAEK EQQHLVAEME ENSBTAP00000040719/1-525 QQALQLARGV DEELEDLKTL AKSLEEQNRS LLAQARHTEK EQQRLVAEME bmy_06386T0/1-658 QQALQFAKAV DEELEDLKTL AKSLEEQNRG LLAQARQTEK EQQQLVAEIE BACU002209/1-1059 QQALQFAKAV DEELEDLKTL AKSLEEQNRG LLAQARQTEK EQQQLAAEIE ENSTTRP00000005094/1-564 QQALQFAKAL DEELEDLKTL AKSLEEQNRG LLAQARQTEK EQQQLVAEIE 301 350 ENSP00000404220/1-562 TLQEENGKL- ---------- ---------- -LAERDGVKK RSQELAMEKD ENSBTAP00000040719/1-525 TLQEENGKL- ---------- ---------- -LAERDGVKR RSEELASEKD bmy_06386T0/1-658 SLQEEIRDFN QAFRFPGPVG NSAETPLGVA DVQRHEGKLR RGARESGRAR BACU002209/1-1059 SLQEENGKL- ---------- ---------- -LAERDGVKR RSEELATEKD ENSTTRP00000005094/1-564 SLQEENEKL- ---------- ---------- -LAEQDGVKR RSEELATEKE 351 400 ENSP00000404220/1-562 TLK------- ---------- ---------- -RQLFECEHL ICQRDTILSE ENSBTAP00000040719/1-525 ILK------- ---------- ---------- -RQLYECEHL ICQRDAILSE bmy_06386T0/1-658 QMDGRLPWQ- ---------- ---------- -RQLYECERL ICQRDAILSE BACU002209/1-1059 ALKVPPLPST LTTSYHPEAI FTITSFSPCG LRQLSECERL ICQRDAILSE ENSTTRP00000005094/1-564 ALK------- ---------- ---------- -RQLYECERL ICQRDAILSE 401 450 ENSP00000404220/1-562 RTRDVESLAQ TLEEYRVTTQ ELRLEISRLE EQLSQTYEGP DELPEGAQLR ENSBTAP00000040719/1-525 RTRHAESLTK TLEEYRATTQ ELRLEISHLE EQLSQTQEGL DELSEGAQVR bmy_06386T0/1-658 RTRHAESLAK TLEEYRTTTQ ELRLEISHLE EQLSQTHEGL DELPEGAQVR BACU002209/1-1059 RTRHAESLAK TLEEYRTTTQ ELRLEISHLE EQLSQTHEGL DELPEGAQVR ENSTTRP00000005094/1-564 RTRHAESLAK TLEEYRTTIQ ELKLEISHLE EQLSQTHEGL DELPEGAQVR 451 500 ENSP00000404220/1-562 RVGWTELLPP SLGLEIEAIR -------QKQ EVATADLSNP LCGVWQWEEV ENSBTAP00000040719/1-525 RVDCTNLLPP SLGVELQAIQ ---------- ---------- ---------- bmy_06386T0/1-658 RVDWTKLPPP SLGVEIQAIR QKQLLLSQKQ EVAAADLSNP LCGVWQWEEV BACU002209/1-1059 RVDWTKLPPP SLGVEIQAIR -------QKQ EVAAADLSNP LCGVWQWEEV ENSTTRP00000005094/1-564 RVDWTKLPRP SLGVEIQAIR -------QKQ EVAAADLSNP LCGVWQWEEV 501 550 ENSP00000404220/1-562 IHETSEETEF PSEAPAGGQR NFQGEPAHPE EGRKEPSMW- ---------- ENSBTAP00000040719/1-525 ---------- --------QR NLQEESAHPQ EGREEPSTR- ---------- bmy_06386T0/1-658 INETNEEAEF PPEAPTGGQR NFQGEPAYPH EGRKQRSMWF CHTAGEWEPG BACU002209/1-1059 INETNEEAEF PPEAPSGGQR NFQGEPAYPH EGRKERSMW- ---------- ENSTTRP00000005094/1-564 INETNEEAEF PPEAPTGGQR NFQAEPAYPH EGRKERSMW- ---------- 551 600 ENSP00000404220/1-562 ---------- ----LTRREE EEDAESQVTA DLPVPLGAPR PGDIPENPPE ENSBTAP00000040719/1-525 ---------- ----LPRREE EDGAEIQVMV DLPLHPEDSH PGDILGNPPE bmy_06386T0/1-658 RGDRCLQQLT CRPRLPRREE EEDAEIRVTV DLPIPLGDSH PGDIPGSPPE BACU002209/1-1059 ---------- ----LPRREK EEEAEIRVTV DLPIPLGDSH PGDIPGSPPE ENSTTRP00000005094/1-564 ---------- ----LPRREE EEEAEIPVMV DLPIPLGDSH PGDIPGSPPE 601 650 ENSP00000404220/1-562 -RPARRELQQ ALVPVMKKLV PVRRRAWGQL CLPP---QRL RVTRHPLIPA ENSBTAP00000040719/1-525 SSPSEPELQQ ALVPMVKELV PVRRPVWGQL CLWPLHLRRL RVTRHLLIPA bmy_06386T0/1-658 SRPSEPELQQ ALVPVVKELV PVRRPVWGHL CLRPLHPQQL RVTRHPLIPA BACU002209/1-1059 SRPSEPELQQ ALVPVVKELV PVRRPVWGHL CLRPLHPQQL RVTRHPLIPA ENSTTRP00000005094/1-564 -RPSEPELQQ ALVPVVKELV PVRRPVWGHL CLRPLHPQQL RFTRHPLILA 651 700 ENSP00000404220/1-562 PVLGLLLLLL L--------- -----SVLLL ---------- ---------- ENSBTAP00000040719/1-525 PLLGLLLLLL L--------- -----SVLLL ---------- ---------- bmy_06386T0/1-658 PVLGLLLLLL LLL------- -----SVRLL ---------- ---------- BACU002209/1-1059 PVLGLLLLLL LLLLSVNPRA MKSFSPILFL LVFLFAWLGS KAAHSASPPE ENSTTRP00000005094/1-564 PVLGLLLLLL L--------- -----SVRLL ---------- ---------- 701 750 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 GSDFSRIDHP SQPSPPASGN STLNGSNPES PRTAYPEPCK TPHAVSPEPS ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 751 800 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 PLEFTETPNT DFRESPHPES PEAPKPNSLN TSISESLDTL QIKPSKMTYP ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 801 850 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 EPSETPKPDP TEIPHTESPE TPKPNSSKTS HPEFPETPNP APTQTPHQES ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 PEISKHSSTE ISHAEAPETP NPDPTKTFDP KSPETHDPDT TETPNSKFLQ ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 901 950 ENSP00000404220/1-562 ---------- ------GPSP PPT------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ------GQSP PPT------- ---------- ---------- bmy_06386T0/1-658 ---------- ------GQSP PPA------- ---------- ---------- BACU002209/1-1059 TLHPDPTKTP HPASHVGHNP NPTEIPQTEF PTTPYQDATE TLPASDPEIS ENSTTRP00000005094/1-564 ---------- ------GQSP TPT------- ---------- ---------- 951 1000 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 TSLPPETPAP FKEEVTALNE LPLNPKSETL AATQPDALKL PTSESPGTVD ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 LKVPQNSSPK GPDALPPSAR IVRSPAPPGP PNQPAPVTPR APQRRSRGES ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000404220/1-562 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040719/1-525 ---------- ---------- ---------- ---------- ---------- bmy_06386T0/1-658 ---------- ---------- ---------- ---------- ---------- BACU002209/1-1059 VNTIIVVERV KETGEGLGPG LLGLREEGPG NRTPGSKGGE GFMHLDAPKD ENSTTRP00000005094/1-564 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000404220/1-562 ---------- -WPHLQLCYL QPPPV----- ---------- ---------- ENSBTAP00000040719/1-525 ---------- -WPHLQLCYL QPPPV----- ---------- ---------- bmy_06386T0/1-658 ---------- -WPHLQLCYL QPPPV----- ---------- ---------- BACU002209/1-1059 PYNLYFYAPN AWVPSHIAAK QPPPTPPLPP KLPPPPRGGR PQHLEPLSPS ENSTTRP00000005094/1-564 ---------- -WPHLQLCYL QPPPV----- ---------- ---------- 1151 1200 ENSP00000404220/1-562 ------- ENSBTAP00000040719/1-525 ------- bmy_06386T0/1-658 ------- BACU002209/1-1059 TLPNNFV ENSTTRP00000005094/1-564 -------