KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:51 2014 Check: 00 .. Name: ENSP00000360526/1-1048 Len: 1081 Check: 9651 Weight: 1.00 Name: ENSBTAP00000040726/1-1003 Len: 1081 Check: 220 Weight: 1.00 Name: BACU011314/1-935 Len: 1081 Check: 7832 Weight: 1.00 Name: bmy_00257T0/1-1031 Len: 1081 Check: 3482 Weight: 1.00 Name: ENSTTRP00000003570/1-1035 Len: 1081 Check: 5060 Weight: 1.00 // 1 50 ENSP00000360526/1-1048 MQSKVTGNMP TQSLLMYMDG PEVIGSSLGS PMEMEDALSM KGTAVVPFRA ENSBTAP00000040726/1-1003 YNPQETGNMP TQSLLVYMDG PEVIGNSLGT QMELDDAMTI KGAAAVPFRA BACU011314/1-935 --------MP TQSLLMYMDG PEVIGNSLGT QMEIDDAMTI KGTAAVPFRA bmy_00257T0/1-1031 --------MP TQSLLMYMDG PEVIGNSLGT QMEIDDAMTI KGTAAVPFRA ENSTTRP00000003570/1-1035 IQSQETGNMP TQSLLMYMDG PEVIGNSLGT QMEIDDAMTI KGTAAVPFRA 51 100 ENSP00000360526/1-1048 TQEKNVIQIE GYMPLDCMFC SQTFTHSEDL NKHVLMQHRP TLCEPAVLRV ENSBTAP00000040726/1-1003 AQEKSITQME GCMPLDCMFC SQSFTRSEDL SKHVLLQHRP TLCEPAVLRV BACU011314/1-935 TQEKNIIQIE GYMPLDCMFC SQTFTRSEDL NKHVLMQHRP ILCEPAVLRV bmy_00257T0/1-1031 TQEKNIIQIE GYMPLDCMFC SQTFTRSEDL NKHVLMQHRP ILCEPAVLRV ENSTTRP00000003570/1-1035 TQEKNIIQIE GYMPLDCMFC SQTFTHSEDL NKHVLMQHRP ILCEPAVLRV 101 150 ENSP00000360526/1-1048 EAEYLSPLDK SQVRTEPPKE KNCKEN-EFS CEVCGQTFRV AFDVEIHMRT ENSBTAP00000040726/1-1003 EAEYLSPLDK VQVRSEPPKD KSCKENEELS CEVCGQTFRV AFDVEIHMKK BACU011314/1-935 EAEYLSPLDK VQVRTEPPKD KNCKENEELS CEVCGQTFRV AFDVEIHMKK bmy_00257T0/1-1031 EAEYLSPLDK VQVRTEPPKD KNCKENEELS CEVCGQTFRV AFDVEIHMKK ENSTTRP00000003570/1-1035 EAEYLSPLDK VQVRTEPPKD KNCKENEELC CEVCGQTFRA AFDVEIHMKK 151 200 ENSP00000360526/1-1048 HKDSFTYGCN MCGRRFKEPW FLKNHMRTHN GKSGARSKLQ QGLESSPATI ENSBTAP00000040726/1-1003 HKDSFTYGCH MCGRRFKEPW FLKNHMRTHT GKSGAKSRLQ PGLE-SPATI BACU011314/1-935 HKDSFTYGCN VCGRRFKEPW FLKNHMRTHT GKSGAKSRPQ PGLE-SPATI bmy_00257T0/1-1031 HKDSFTYGCN VCGRRFKEPW FLKNHMRTHT GKSGAKSRPQ PGLE-SPATI ENSTTRP00000003570/1-1035 HKDSFTYGCN VCGRRFKEPW FLKNHMRTHT GKSGAKSRPQ PGLE-SPVTI 201 250 ENSP00000360526/1-1048 NEVVQVHAAE SISSPYKICM VCGFLFPNKE SLIEHRKVHT KKTAFGTSSA ENSBTAP00000040726/1-1003 NEVVQEPAAE GVSSPYKICM VCGFLFPNKE SLIDHRKMHT KEAASGPRGP BACU011314/1-935 NEVVQEHAAE SVSSPYKICM VCGFLFPNKE SLIDHRKMHT KDTASGTRSS bmy_00257T0/1-1031 NEVVQEHAAE SVSSPYKICM VCGFLFPNKE SLIDHRKMHT KDTASGTRSS ENSTTRP00000003570/1-1035 NEVVQEHAAE SVSSPYKICM VCGFLFPNKE SLIDHRKMHT KDTASGTRSS 251 300 ENSP00000360526/1-1048 QTDSPQGGMP SSREDFLQLF NLRPKSHPET GKKPVRCIPQ LDPFTTFQAW ENSBTAP00000040726/1-1003 QIEAPQEGML SPGAELLQFL NLRPTSPAEI AKKPAKWIPQ LDPFTTYQAW BACU011314/1-935 QTDTQQEGMP SPGEELLQFL NLRPRSHPEI AKKPAKWIPQ LDPFTTYQAW bmy_00257T0/1-1031 QTDTQQEGMP SPGEELLQFL NLRPRSHPEI AKKPAKWIPQ LDPFTTYQAW ENSTTRP00000003570/1-1035 QTDTQQEGMP SPGEELLQFL NLRPRSHPEV VKKPAKWIPQ LDPFTTYQAW 301 350 ENSP00000360526/1-1048 QLATKGKVAI CQEVKE--SG QEGSTDNDDS SSEK-ELGE- ---------- ENSBTAP00000040726/1-1003 QLATKGKVAV CREVKEQQPG QEGSTDNDES CSDKEEPG-- ---------- BACU011314/1-935 QLATKGKVAV CREVKE-QPG QEGSTDNDES CSDKEELGEI WNTNKSHPEG bmy_00257T0/1-1031 QLATKGKVAV CREVKE-QPG QEGSTDNDES CSDKEELGEI WNTNKSHPEG ENSTTRP00000003570/1-1035 QLATKGKVAV CREVKE-QPG QEGSTDNDES CSDKEELGE- ---------- 351 400 ENSP00000360526/1-1048 -----TNKGS CAGLSQEKEK CKHSHGEAPS VDADPKLPSS KEKPTHCSEC ENSBTAP00000040726/1-1003 -----TSKSG CPGLSQDKEK SRHPHGEVPS VDADPKLASS KDKPTHCAEC BACU011314/1-935 SGKSKTSKSG CPGVSQDKEK PRHPTGEVPS VDADPKLASN KEKPTHCSEC bmy_00257T0/1-1031 SGKSKTSKSG CPGLSQDKEK PRHPNGEVPS VDADPKLASN KEKPTHCSEC ENSTTRP00000003570/1-1035 -----TSKSG CPGLSQDKEK PRHPAGEVPS VDTDPKLASN KEKPTHCSEC 401 450 ENSP00000360526/1-1048 GKAFRTYHQL VLHSRVHKKD RRAGAESPTM SVDGRQPGTC SPDLAAPLDE ENSBTAP00000040726/1-1003 GKAFRTYHQL VLHSRVHKKE RRPDAGSPPT AADGRQPRTC SPELPPALED BACU011314/1-935 GKAFRTYHQL VLHSRVHKKD RRADAESPPM SVDGRQPRTC SPDLPPTLEE bmy_00257T0/1-1031 GKAFRTYHQL VLHSRVHKKD RRADAESPPM SVDGRQPRTC SPDLPPTLEE ENSTTRP00000003570/1-1035 GKAFRTYHQL VLHSRVHKKD RRADAESPPM SVDGRQPSTC SPDLPPTLEE 451 500 ENSP00000360526/1-1048 NGAVDRGEGG SEDGSEDGLP EGIHLDKNDD GGKIKHLTSS RECSYCGKFF ENSBTAP00000040726/1-1003 SGALDR-EAG SEDGSEDGLP DGLHLDKNDD GGKMKHLTSS RECSYCGKFF BACU011314/1-935 NGAIDR-EGG SEDGSEDGLP EGLHLDKNDD GGKIKHLTSS RECSYCGKFF bmy_00257T0/1-1031 NGAIDR-E-- ---------- -----DKNDD GGKIKHLTSS RECSYCGKFF ENSTTRP00000003570/1-1035 NGAIDR-EGG SEDGSEDGLP EGLHLDKNDD GGKIKHLTSS RECSYCGKFF 501 550 ENSP00000360526/1-1048 RSNYYLNIHL RTHTGEKPYK CEFCEYAAAQ KTSLRYHLER HHKEKQTDVA ENSBTAP00000040726/1-1003 RSNYYLNIHL RTHTGEKPYK CEFCDYAAAQ KTSLRYHLER HHRDKQTDAA BACU011314/1-935 RSNYYLNIHL RTHTGEKPYK CEFCDYAAAQ KTSLRYHLER HHKDKQADAA bmy_00257T0/1-1031 RSNYYLNIHL RTHTGEKPYK CEFCDYAAAQ KTSLRYHLER HHKDKQADAA ENSTTRP00000003570/1-1035 RSNYYLNIHL RTHTGEKPYK CEFCDYAAAQ KTSLRYHLER HHKDKQTDAA 551 600 ENSP00000360526/1-1048 AEVKNDGKNQ DTEDALLTAD SAQTKNLKRF FDGAKDVTGS PPAKQLKEMP ENSBTAP00000040726/1-1003 ADAKSDGRPP EAEDALLTAD GAQTKNLKRC FDGAKDVKGS PPAKQLKGMA BACU011314/1-935 AEIRNEGKNQ ETEDALLTAD SAQTKNLKRC FDGAKDVKGS SPAKQLKGMA bmy_00257T0/1-1031 AEVRNEGKNQ ETEDALLTAD SAQTKNLKRC FDGAKDVKGS SPAKQLKGMA ENSTTRP00000003570/1-1035 AEVRNEGKNQ ETEDALLTTD SAQTKNQKRC FDGAKDVKGS SPAKQLKGMA 601 650 ENSP00000360526/1-1048 SVFQNVLGSA VLSPAHKDTQ DFHKNAADDS ADKVNKNPTP AYLDLLKKRS ENSBTAP00000040726/1-1003 PASQSVLGGA VLAPVHRETQ DFSKDAADDG AEKLSKAPGP AYLDALKKRP BACU011314/1-935 PAFQNVLGSA VLSAVHKDTQ DFSKNTADDS ADKLSKNPAP ASLDVLKKRS bmy_00257T0/1-1031 PAFQNVLGSA VLSAVHKDTQ DFSKNAADDS ADKLSKNPAP ASLDVLKKRS ENSTTRP00000003570/1-1035 PAFQNILGSP VLLAVHKDTQ DFSKNAADDS ADKLSKNPAP AYLDVLKKRP 651 700 ENSP00000360526/1-1048 AVETQANNLI CRTKADVTPP PDGSTTHNLE VSPKEKQTET AADCRYRPSV ENSBTAP00000040726/1-1003 PADPQASPLV CRTEA----- --ATAARHAQ LGPREKRA-A DAGWQ----- BACU011314/1-935 AVEPQAHNLT CRTEVDVAPH PDGWAAHHVQ VGHREKKAEV DADCQ----- bmy_00257T0/1-1031 AVEPQAHNLT CRTEVDVAPH PDGRAAHHVQ VGHREKKAEV DADCQ----- ENSTTRP00000003570/1-1035 AVEPQAHNLT CRTEVDVAPH PDGRVAHHVQ VGHREKKAEV DANCQ----- 701 750 ENSP00000360526/1-1048 DCHEKPLNLS VGALHNCPAI SLSKSLIPSI TCPFCTFKTF YPEVLMMHQR ENSBTAP00000040726/1-1003 ---EKPLNLS LAP-HGGAGA PLGRSVTASS TCPLCTFKTF YPEVLTMHQR BACU011314/1-935 ---EKPLNLS LGASHCCPAA SLGKSVTTST TCPFCTFKTF YPEVLTMHQR bmy_00257T0/1-1031 ---EKPLNLS LGASHCCPAA SLGKSVTTST TCPFCTFKTF YPEVLTMHQR ENSTTRP00000003570/1-1035 ---EKPLNLS LGASHCCPAA SLGKSVTTST TCPFCTFKTF YPEVLTMHQR 751 800 ENSP00000360526/1-1048 LEHKYNPDVH KNCRNKSLLR SRRTGCPPAL LGKDVPPLSS FCKPKPKSAF ENSBTAP00000040726/1-1003 LEHKYHPDAL ESCRGRAALR SRRTGCPPAL LGKDVPPLPG AFRPKPRPAA BACU011314/1-935 LEHKYNPDSH RNCRNKSLLR SRRTGCPPAL LGKDVPPLSN PYKPRPRPAF bmy_00257T0/1-1031 LEHKYNPDSH RNCRNKSLLR SRRTGCPPAL LGKDVPPLSN PYKPKPRPAF ENSTTRP00000003570/1-1035 LEHKYNPDSH RNCRNKSLLR SRRTGCPPAL LGKDVPPLSN PYKPKPRPAF 801 850 ENSP00000360526/1-1048 PAQSKSLPSA KGKQSPPGPG KA---PLTSG IDSSTLAPSN LKSHR--PQQ ENSBTAP00000040726/1-1003 PEQPKPAPAE RPAPGAPGPS RAPPPPPPAG AD-STLAPSN LKALRPLPPP BACU011314/1-935 PAQPRPLPPE KAKPTPAGPG KA---PLTSG IDSSTLAPSN LKSHR--PPQ bmy_00257T0/1-1031 PAQPRPLPSE KAKPTPAGPG KA---PLTSG IDSSTLAPSN LKSHR--PPQ ENSTTRP00000003570/1-1035 PAQPRPLPSE KAKPTPPGPG KA---PLTSG IDSSTLAPSN LKSHR--PPQ 851 900 ENSP00000360526/1-1048 NVGVQGAATR QQQSEMFPKT SVSPAP--DK TKRPETKLKP LPV--APSQP ENSBTAP00000040726/1-1003 GLGVSGPGPA RTPPEA-PPC KAGP----EK VRRPE----P QPP--AD--- BACU011314/1-935 SLGGPGAAAR QPPSEMSAQS KAC------- ---------- -----AP--- bmy_00257T0/1-1031 SLGGPGSAAR QPPSEMFAKA GATPAPAADK AKRLEPKPKP QPPAGAPAQP ENSTTRP00000003570/1-1035 SLGGLGAAAR QPPSEMFAKA SATPAA--DK AKRLEPKPKP QPPAGAPAQP 901 950 ENSP00000360526/1-1048 TLGSSNINGS IDYPAKNDSP WAPPGRDYFC NRSASNTAAE FGEPLPKRLK ENSBTAP00000040726/1-1003 ---------- ---AARSDGP WVP-TRDYAC GRG----GAE PGEPLPKRPR BACU011314/1-935 ---------- ---TLQFKSL FKAFMNPYLL GEGS---GTE ---------Q bmy_00257T0/1-1031 APGAA-LNGC SDHTPRNDGP WAPPARDYFC GRAA---GTE PGEPLPKRPR ENSTTRP00000003570/1-1035 APGGA-LNGC SDHTPRNDGL WAPPARDYFC GR-----GAE PDEPLPKRPR 951 1000 ENSP00000360526/1-1048 SSVVALDVDQ PGANYRRGYD LPKYHMVRGI TSLLPQDCVY PSQ-ALPPKP ENSBTAP00000040726/1-1003 VPP-----EP PCAPCRRPPE LPQYRVVRGL ASLLPPECAC APP-APPARP BACU011314/1-935 VGL------- --------FR LFRSHGLDGY KCTLH----- ---------- bmy_00257T0/1-1031 VGAPALDGDQ PGPHYRRPFD LPKFHVVRGL TSLLPPECAC PPPTALPARP ENSTTRP00000003570/1-1035 VGAPARDGDQ PGPHY-RAFD LPKFHVVHGL TSLLPPECAC PPPTALPARP 1001 1050 ENSP00000360526/1-1048 RFLSSSEVDS PNVLTVQKPY GGSGPLYTCV PA---GSPAS SSTLEGKRPV ENSBTAP00000040726/1-1003 R-PAPGPAFA A-LLPCA-PA AALEGGRPRG ALEGRGGPWS SGPFSGKRPV BACU011314/1-935 ------EIEL V-HLLKKQMV KATEISCDC- ---------- ------TVHI bmy_00257T0/1-1031 RFLSTGEADA A-VLPAQKPF AAAGALFPCG PV----GPAA GPALEGKRPV ENSTTRP00000003570/1-1035 RFLATGEADA A-VLPAQKPF AAAGALFPCG PA----GPAA GSALEGKRPV 1051 1100 ENSP00000360526/1-1048 SYQHLSNSMA QKRNYENFIG NAHYRPNDKK T ENSBTAP00000040726/1-1003 SYQHLSSSML QKRNYENFIG NAHYRPNDKK T BACU011314/1-935 TYKE------ ---------- --HYGFVKLF C bmy_00257T0/1-1031 SYQHLSSSML QKRNYENFIG NAHYRPNDKK T ENSTTRP00000003570/1-1035 SYQHLSSSML QKRNYENFIG NAHYRPNDKK T