KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:53 2014 Check: 00 .. Name: bmy_07863T0/1-219 Len: 325 Check: 7966 Weight: 1.00 Name: ENSP00000332706/1-322 Len: 325 Check: 7061 Weight: 1.00 Name: BACU004127/1-223 Len: 325 Check: 4984 Weight: 1.00 Name: ENSTTRP00000010824/1-325 Len: 325 Check: 5279 Weight: 1.00 Name: ENSBTAP00000040759/1-322 Len: 325 Check: 6689 Weight: 1.00 // 1 50 bmy_07863T0/1-219 ---------- ---------- ---------- ---------- ---------- ENSP00000332706/1-322 MADRDSGSEQ GGAALGSGGS LGHPGSGSGS GGGGGGGGGG GG--SGGGGG BACU004127/1-223 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010824/1-325 MADRDSGSEQ GGAALGSGGS LGHPGSGSGS GGGGGGGGGG GGGSGGGGGG ENSBTAP00000040759/1-322 MADRDSGSEQ GGAALGSGGS LGHPGSGSGG GGGGGGGGGG GS--GGGGGG 51 100 bmy_07863T0/1-219 ---------- ---------- ---------- ---------- ---------- ENSP00000332706/1-322 GAPGGLQHET QELASKRVDI QNKRFYLDVK QNAKGRFLKI AEVGAGGNKS BACU004127/1-223 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010824/1-325 GAPGGLQHET QELASKRVDI QNKRFYLDVK QNAKGRFLKI AEVGAGGNKS ENSBTAP00000040759/1-322 GAPGGLQHET QELASKRVDI QNKRFYLDVK QNAKGRFLKI AEVGAGGNKS 101 150 bmy_07863T0/1-219 -----MSVAV EFRDYLGDFI EHYAQLGPSQ PPDLAQAQDE PRRALKSEFL ENSP00000332706/1-322 RLTLSMSVAV EFRDYLGDFI EHYAQLGPSQ PPDLAQAQDE PRRALKSEFL BACU004127/1-223 -LTLSMSVAV EFRDYLGDFI EHYAQLGPSQ PPDLAQAQDE PRRALKSEFL ENSTTRP00000010824/1-325 RLTLSMSVAV EFRDYLGDFI EHYAQLGPSQ PPDLAQAQDE PRRALKSEFL ENSBTAP00000040759/1-322 RLTLSMSVAV EFRDYLGDFI EHYAQLGPSQ PPDLAQAQDE PRRALKSEFL 151 200 bmy_07863T0/1-219 VRENRKYYMD LKENQRGRFL RIRQTVNRGP GLGSTQGQTI ALPAQGLIEF ENSP00000332706/1-322 VRENRKYYMD LKENQRGRFL RIRQTVNRGP GLGSTQGQTI ALPAQGLIEF BACU004127/1-223 VRENRKYYMD LKENQRGRFL RIRQTVNRGP GLGSTQGQTI ALPAQGLIEF ENSTTRP00000010824/1-325 VRENRKYYMD LKENQRGRFL RIRQTVNRGP GLGSTQGQTI ALPAQGLIEF ENSBTAP00000040759/1-322 VRENRKYYMD LKENQRGRFL RIRQTVNRGP GLGSTQGQTI ALPAQGLIEF 201 250 bmy_07863T0/1-219 RDALAKLIDD YGVEEEPAEL PEGTSLTVDN KRFFFDVGSN KYGVFMRVSE ENSP00000332706/1-322 RDALAKLIDD YGVEEEPAEL PEGTSLTVDN KRFFFDVGSN KYGVFMRVSE BACU004127/1-223 RDALAKLIDD YGVEEEPAEL PEGTSLTVDN KRFFFDVGSN KYGVFMRVSE ENSTTRP00000010824/1-325 RDALAKLIDD YGVEEEPAEL PEGTSLTVDN KRFFFDVGSN KYGVFMRVSE ENSBTAP00000040759/1-322 RDALAKLIDD YGVEEEPAEL PEGTSLTVDN KRFFFDVGSN KYGVFMRVSE 251 300 bmy_07863T0/1-219 VKPTYRNSIT VPYKVWAKFG HTFCKYSEEM KKIQEKQREK RAACEQLH-Q ENSP00000332706/1-322 VKPTYRNSIT VPYKVWAKFG HTFCKYSEEM KKIQEKQREK RAACEQLH-Q BACU004127/1-223 VKPTYRNSIT VPYKVWAKFG HTFCKYSEEM KKIQEKQREK RAACEQLH-Q ENSTTRP00000010824/1-325 VKPTYRNSIT VPYKVWAKFG HTFCKYSEEM KKIQEKQREK RAACEQLHQQ ENSBTAP00000040759/1-322 VKPTYRNSIT VPYKVWAKFG HTFCKYSEEM KKIQEKQREK RAACEQLH-Q 301 350 bmy_07863T0/1-219 QQQQQQEETA AATLLLQGEE EGEED ENSP00000332706/1-322 QQQQQQEETA AATLLLQGEE EGEED BACU004127/1-223 QQQQQQEETA AATLLLQGEE EGEED ENSTTRP00000010824/1-325 QQQQQQEETA AATLLLQGEE EGEED ENSBTAP00000040759/1-322 QQQQQQEETA AATLLLQGEE EGEED