KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:53 2014 Check: 00 .. Name: ENSTTRP00000005234/1-976 Len: 1048 Check: 9442 Weight: 1.00 Name: bmy_06365T0/1-653 Len: 1048 Check: 8590 Weight: 1.00 Name: ENSBTAP00000040769/1-968 Len: 1048 Check: 2064 Weight: 1.00 Name: ENSP00000351926/1-977 Len: 1048 Check: 6296 Weight: 1.00 Name: BACU011066/1-997 Len: 1048 Check: 7899 Weight: 1.00 // 1 50 ENSTTRP00000005234/1-976 ---------- ---------- ---------M PAVSKGDGMR GLAVFISDIR bmy_06365T0/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040769/1-968 APVIAAYRRP RERRPAEARA RPGADATAIM PAVSKGDGMR GLAVFISDIR ENSP00000351926/1-977 ---------- ---------- ---------M PAVSKGDGMR GLAVFISDIR BACU011066/1-997 ---------- ---------- ---------M PAVSKGDGMR GLAVFISDIR 51 100 ENSTTRP00000005234/1-976 NCKSKEAEIK RINKELANIR SK-KXXXXXX XXXXXXXXXX XXXXXXXXXD bmy_06365T0/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040769/1-968 NCKSKEAEIK RINKELANIR SKFKGDKALD GYSKKKYVCK LLFIFLLGHD ENSP00000351926/1-977 NCKSKEAEIK RINKELANIR SKFKGDKALD GYSKKKYVCK LLFIFLLGHD BACU011066/1-997 NCKSKEAEIK RINKELANIR SKFKGDKALD GYSKKKYVCK LLFIFLLGHD 101 150 ENSTTRP00000005234/1-976 IDFGHMEAV- LLSSNKYTEK QIGYLFISVL VNSNSELIRL INNAIKNDLA bmy_06365T0/1-653 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040769/1-968 IDFGHMEAVN LLSSNKYTEK QIGYLFISVL VNSNSELIRL INNAIKNDLA ENSP00000351926/1-977 IDFGHMEAVN LLSSNKYTEK QIGYLFISVL VNSNSELIRL INNAIKNDLA BACU011066/1-997 IDFGHMEAVN LLSSNKYTEK QIGYLFISVL VNSNSELIRL INNAIKNDLA 151 200 ENSTTRP00000005234/1-976 SRNPTFMCLA LHCIANVGSR EMGEAFAADI PRILVAGDSM DSVKQSAALC bmy_06365T0/1-653 ---------- ---------- -MGEAFAADI PRILVAGDSM DSVKQSAALC ENSBTAP00000040769/1-968 SRNPTFMCLA LHCIANVGSR EMGEAFAADI PRILVAGDSM DSVKQSAALC ENSP00000351926/1-977 SRNPTFMCLA LHCIANVGSR EMGEAFAADI PRILVAGDSM DSVKQSAALC BACU011066/1-997 SRNPTFMCLA LHCIANVGSR EMGEAFAADI PRILVAGDSM DSVKQSAALC 201 250 ENSTTRP00000005234/1-976 LLRLYKASPD LVPMGEWTAR VVHLLNDQHM GVVTAAVSLI TCLCKKNPDD bmy_06365T0/1-653 LLRLYKASPD LVPMGEWTAR VVHLLNDQHM ---------- ---------- ENSBTAP00000040769/1-968 LLRLYKASPD LVPMGEWTAR VVHLLNDQHM GVVTAAVSLI TCLCKKNPDD ENSP00000351926/1-977 LLRLYKASPD LVPMGEWTAR VVHLLNDQHM GVVTAAVSLI TCLCKKNPDD BACU011066/1-997 LLRLYKASPD LVPMGEWTAR VVHLLNDQHM GVVTAAVSLI TCLCKKNPDD 251 300 ENSTTRP00000005234/1-976 FKTCISLAVS RLSRIVSSAS TDLQDYTYYF VPAPWLSVKL LRLLQCYPPP bmy_06365T0/1-653 ---------- ----IVSSAS TDLQDYTYYF VPAPWLSVKL LRLLQCYPPP ENSBTAP00000040769/1-968 FKTCVSLAVS RLSRIVSSAS TDLQDYTYYF VPAPWLSVKL LRLLQCYPPP ENSP00000351926/1-977 FKTCVSLAVS RLSRIVSSAS TDLQDYTYYF VPAPWLSVKL LRLLQCYPPP BACU011066/1-997 FKTCISLAVS RLSRIVSSAS TDLQDYTYYF VPAPWLSVKL LRLLQCYPPP 301 350 ENSTTRP00000005234/1-976 EDAAVKGRLV ECLETVLNKA QEPPKSKKVQ HSNAKNAILF ETISLIIHYD bmy_06365T0/1-653 GTAEPTG--- -------AGG WGPPTPWLGR GSGCW----- ---------- ENSBTAP00000040769/1-968 EDAAVKGRLV ECLETVLNKA QEPPKSKKVQ HSNAKNAILF ETISLIIHYD ENSP00000351926/1-977 EDAAVKGRLV ECLETVLNKA QEPPKSKKVQ HSNAKNAILF ETISLIIHYD BACU011066/1-997 EDAAVKGRLV ECLETVLNKA QEPPKSKKVQ HSNAKNAILF ETISLIIHYD 351 400 ENSTTRP00000005234/1-976 SEPNLLVRAC NQLGQFLQHR ETNLRYLALE SMCTLASSEF SHEAVKTHID bmy_06365T0/1-653 GEPNLLVRAC NQLGQFLQHR ETNLRYLALE SMCTLASSEF SHEAVKTHID ENSBTAP00000040769/1-968 SEPNLLVRAC NQLGQFLQHR ETNLRYLALE SMCTLASSEF SHEAVKTHID ENSP00000351926/1-977 SEPNLLVRAC NQLGQFLQHR ETNLRYLALE SMCTLASSEF SHEAVKTHID BACU011066/1-997 SEPNLLVRAC NQLGQFLQHR ETNLRYLALE SMCTLASSEF SHEAVKTHID 401 450 ENSTTRP00000005234/1-976 TVINALKTER DVSVRQRAAD LLYAMCDRSN AKQIXXXXXX XXXXXXXXXX bmy_06365T0/1-653 TVINALKTER DVSVRQRAAD LLYAMCDRSN AKQIVSEMLR YLETADYAIR ENSBTAP00000040769/1-968 TVINALKTER DVSVRQRAAD LLYAMCDRSN AKQIVSEMLR YLETADYAIR ENSP00000351926/1-977 TVINALKTER DVSVRQRAAD LLYAMCDRSN AKQIVSEMLR YLETADYAIR BACU011066/1-997 TVINALKTER DVSVRQRAAD LLYAMCDRSN AKQIVSEMLR YLETADYAIR 451 500 ENSTTRP00000005234/1-976 XXXVLKVAIL AEKYAVDYSW YVDTILNLIR IAGDYVSEEV WYRVLQIVTN bmy_06365T0/1-653 EEIVLKVAIL AEKYAVDYSW YVDTILNLIR IAGDYVSEEV WYRVLQIVTN ENSBTAP00000040769/1-968 EEIVLKVAIL AEKYAVDYSW YVDTILNLIR IAGDYVSEEV WYRVLQIVTN ENSP00000351926/1-977 EEIVLKVAIL AEKYAVDYSW YVDTILNLIR IAGDYVSEEV WYRVLQIVTN BACU011066/1-997 EEIVLKVAIL AEKYAVDYSW YVDTILNLIR IAGDYVSEEV WYRVLQIVTN 501 550 ENSTTRP00000005234/1-976 RDDVQGYAAK TVFEALQAPA CHENMVKVGG YILGEFGNLI AGDPRSSPPV bmy_06365T0/1-653 RDDVQGYAAK TVFE------ ---------- ---------- ---------- ENSBTAP00000040769/1-968 RDDVQGYAAK TVFEALQAPA CHENMVKVGG YILGEFGNLI AGDPRSSPPV ENSP00000351926/1-977 RDDVQGYAAK TVFEALQAPA CHENMVKVGG YILGEFGNLI AGDPRSSPPV BACU011066/1-997 RDDVQGYAAK TVFEALQAPA CHENMVKVGG YILGEFGNLI AGDPRSSPPV 551 600 ENSTTRP00000005234/1-976 QFSLLHSKFH LCSVATRALL LSTYIKFINL FPETKATIQG VLRAGSQLRN bmy_06365T0/1-653 --------FH LCSVATRALL LSTYIKFINL FPETKATIQG VLRAGSQLRN ENSBTAP00000040769/1-968 QFSLLHSKFH LCSVATRALL LSTYIKFINL FPETK-TIQG VLRAGSQLRN ENSP00000351926/1-977 QFSLLHSKFH LCSVATRALL LSTYIKFINL FPETKATIQG VLRAGSQLRN BACU011066/1-997 QFSLLHSKFH LCSVATRALL LSTYIKFINL FPETKATIQG VLRAGSQLRN 601 650 ENSTTRP00000005234/1-976 ADVELQQRAV EYLTLSSVAS TDVL------ ---ATVLEEM PPFPERESSI bmy_06365T0/1-653 ADVELQQRAV EYLTLSSVAS TDVL------ ---ATVLEEM PPFPERESSI ENSBTAP00000040769/1-968 ADVELQQRAV EYLTLSSVAS TDVL------ ---ATVLEEM PPFPERESSI ENSP00000351926/1-977 ADVELQQRAV EYLTLSSVAS TDVL------ ---ATVLEEM PPFPERESSI BACU011066/1-997 ADVELQQRAV EYLTLSSVAS TDVLELPPTP TPQATVLEEM PPFPERESSI 651 700 ENSTTRP00000005234/1-976 LAKLKRKKGP GAGSALDDGR REPSSHDING GVEPTPSTVS TPSPSADLLG bmy_06365T0/1-653 LAKLKRKKGP GAGSALDDGR REPSSHDING GVEPTPSTVS TPSPSADLLG ENSBTAP00000040769/1-968 LAKLKRKKGP GAGSALDDSR RDPSSHDING GVEPTPSTVS TPSPSADLLG ENSP00000351926/1-977 LAKLKRKKGP GAGSALDDGR RDPSSNDING GMEPTPSTVS TPSPSADLLG BACU011066/1-997 LAKLKRKKGP GAGSALDDGR REPSSHDING GVEPTPSTVS TPSPSADLLG 701 750 ENSTTRP00000005234/1-976 LRAAPPPAAP PAPSGAGNLL VDVFSDGPAA QPSLGPTPEE AFLSELEPPA bmy_06365T0/1-653 LRAAPPPAAP PAPSGAGNLL VDVFSDGPAA QPSLGPTPEE AFLS------ ENSBTAP00000040769/1-968 LRAAPPPAAP PAPSGAGNLL VDVFSDSPAA QPGLGPSPEE AFL------- ENSP00000351926/1-977 LRAAPPPAAP PASAGAGNLL VDVF-DGPAA QPSLGPTPEE AFLSELEPPA BACU011066/1-997 LRAAPPPAAP PAPSGAGNLL VDVFSDGPAA QPSLGPTPEE AFLS------ 751 800 ENSTTRP00000005234/1-976 PESPMALLAD PAPAADPGPE DIGPPIPEAD ELLNKFVCRN NGVLFENQLL bmy_06365T0/1-653 ---------- ------PGPE DIGPPIPEAD ELLNKFVCRN NGVLFENQLL ENSBTAP00000040769/1-968 ---------- ---------- ---------- ----RFVCRN NGVLFENQLL ENSP00000351926/1-977 PESPMALLAD PAPAADPGPE DIGPPIPEAD ELLNKFVCKN NGVLFENQLL BACU011066/1-997 ---------- ------PGPE DIGPPIPEAD ELLNKFVCRN NGVLFENQLL 801 850 ENSTTRP00000005234/1-976 QIGVKSEFRQ NLGRMYLFYG NKTSVQFQNF SPTVVHPGDL QA-------- bmy_06365T0/1-653 QIGVKSEFRQ NLGRMYLFYG NKTSVQFQNF SPTV------ ---------- ENSBTAP00000040769/1-968 QIGVKSEFRQ NLGRMYLFYG NKTSVQFQNF SPTVVHPGDL QTHILSAWPS ENSP00000351926/1-977 QIGVKSEFRQ NLGRMYLFYG NKTSVQFQNF SPTVVHPGDL QT-------- BACU011066/1-997 QIGVKSEFRQ NLGRMYLFYG NKTSVQFQNF SPTVVHPGDL QTHILSAWLS 851 900 ENSTTRP00000005234/1-976 ---------- ---------- ----QLAVQT KRVASQVDGG AQVQQVLNIE bmy_06365T0/1-653 ---------- ---------- -----LAVQT KRVASQVDGG AQVQQVLNIE ENSBTAP00000040769/1-968 PAPP------ ---------- ---------- ---GLPVDGG AQVQQVLNIE ENSP00000351926/1-977 ---------- ---------- ----QLAVQT KRVAAQVDGG AQVQQVLNIE BACU011066/1-997 PLAPAPPLQV HLPGSWEGDG PRRAQLAVQT KRVASQVDGG AQVQQVLNIE 901 950 ENSTTRP00000005234/1-976 CLRDFLTPPL LSVRFRYGGA PQSLTLKLPV TINKFFQPTE MAAQDFFQRW bmy_06365T0/1-653 CLRDFLTPPL LSVRFRYGGA PQSLTLKLP- ---------- ---------- ENSBTAP00000040769/1-968 CLRDFLTPPL LSVRFRYGGA PQSLTLKLPV TINKFFQPTE MAAQDFFQRW ENSP00000351926/1-977 CLRDFLTPPL LSVRFRYGGA PQALTLKLPV TINKFFQPTE MAAQDFFQRW BACU011066/1-997 CLRDFLTPPL LSVRFRYGGA PQSLTLKLPV TINKFFQPTE MAAQDFFQRW 951 1000 ENSTTRP00000005234/1-976 KQLSLPQQEA QKIFKANHPM DAEVTKAKLL GFGSALLDNV DPNPENFVGA bmy_06365T0/1-653 ---------- ---------- --------LL GFGSALLDNV DPNPENFVGA ENSBTAP00000040769/1-968 KQLSLPQQEA QKIFKANHPM DAEVTKAKLL GFGSALLDNV DPNPENFVGA ENSP00000351926/1-977 KQLSLPQQEA QKIFKANHPM DAEVTKAKLL GFGSALLDNV DPNPENFVGA BACU011066/1-997 KQLSLPQQEA QKIFKANHPM DAEVTKAKLL GFGSALLDNV DPNPENFVGA 1001 1050 ENSTTRP00000005234/1-976 GIIQTKALQV GCLLRLEPNA QAQMYRLTLR TSKEPVSRHL CELLAQQF bmy_06365T0/1-653 GIIQTKALQV GCLLRLEPNA QAQMYRLTLR TSKEPVSRHL CELLAQQF ENSBTAP00000040769/1-968 GIIQTKALQV GCLLRLEPNA QAQMYRLTLR TSKEPVSRHL CELLAQQF ENSP00000351926/1-977 GIIQTKALQV GCLLRLEPNA QAQMYRLTLR TSKEPVSRHL CELLAQQF BACU011066/1-997 GIIQTKALQV GCLLRLEPNA QAQMYRLTLR TSKEPVSRHL CDLLAQQF