KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:55 2014 Check: 00 .. Name: ENSP00000362386/1-873 Len: 1521 Check: 3908 Weight: 1.00 Name: ENSBTAP00000040770/1-984 Len: 1521 Check: 835 Weight: 1.00 Name: ENSTTRP00000015602/1-867 Len: 1521 Check: 453 Weight: 1.00 Name: bmy_04064T0/1-963 Len: 1521 Check: 1707 Weight: 1.00 Name: BACU016270/1-1368 Len: 1521 Check: 8884 Weight: 1.00 // 1 50 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 MAPKKKAGKG PKEPEVKKKK GGKKDPSPAN KPMETPISEE IREFYHIQIR 51 100 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 DLEDRLARYQ QKWDELAVQE KLFRQEFEQL ANNKKEIVAF LKHTLNQRVD 101 150 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 EITDLNEQLQ SLQLAKEMEK DAFEAQLAQV RHEFQETKDQ LTTENIILGG 151 200 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 KLAALEEFRL QKEELMEKFM LLEDQLRKQE NEYKDYVHNL EKKSVLDKDR 201 250 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 LKKEIIQRVN MVATEFRKVA TSQMWDTTKR AIMENNTVTL QLAKISRQGM 251 300 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 QLLQENEQLR GNQDNLCKQL ELLENSQKVM ARHSRGHQKI ILMLTEKCRE 301 350 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 QQQGRAEAKQ LRLLLSQLEQ SLMQLQKDHQ ALRSQREQLN LQLERQQAEG 351 400 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 QRLQQELAEQ QKVRASLETA LAQATSFLQD IVQMQPDEED GDFDVVFQLQ 401 450 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 RNKMLKHLLV MLSSAMALSR QMAVSPRRES QSCGPPKDRT QPLKTGPLLQ 451 500 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 ---------- ---------- ---------- ---------- ---------- BACU016270/1-1368 QLSSVTPYQL GGLGLVPRRI HIPPNPEDLR LLSHTTRVGN LWAHSSPESQ 501 550 ENSP00000362386/1-873 ---------- -MTDSDEDAL KVDQGPSRDI PKPWVIPAPK GILQHIFGTS ENSBTAP00000040770/1-984 ---------- -MTDSGEDGL EHDKAPSQHI PKPWVIPVPK GTLQRIFGTS ENSTTRP00000015602/1-867 ---------- -MTESRENAL GLDQPPSQHI PKPWVIPVPK GTLQHIFRTS bmy_04064T0/1-963 ---------- -------NAL GLDQAPSQHI PKPWVIPVPK GTLQRIFGTS BACU016270/1-1368 FPQRLVELIV HQADLLSNAL GLDQAPSQHI PKPWVIPVPK GTLQRIFGTS 551 600 ENSP00000362386/1-873 HVFQSICDVK PKVTGLTVPL KVREYYSRGQ QCLEQADWET AVLLFSRALH ENSBTAP00000040770/1-984 QIFQNFDDIK PKATGLTVPL KVREYYHRAH QCLEQEDWEM AVLFFSRALH ENSTTRP00000015602/1-867 QVFRNFDDIK PKAAGLTVPL KVREYYHRGH QCLEQEDWEV AVLFFSRGLH bmy_04064T0/1-963 QVFRNFDDIK PKAAG----- -----YHRGH QCLEQEDWEV AVLFFSRGLH BACU016270/1-1368 QVFRNFDDIK PKAAGLTVPL KVREYYHRGH QCLEQEDWEV AVLFFSRGLH 601 650 ENSP00000362386/1-873 LDPQLVDFYA LRAEAYLQLC DFSSAAQNLR RAYSLQQDNC KHLERLTFVL ENSBTAP00000040770/1-984 LDPQLVEFYA LRAEAYIQLC DFSSAAQNLR KAYHSQPENS NYLERLALVL ENSTTRP00000015602/1-867 LDSQLVEFYA LRAEAYIQLC DFSSAAQNLR KAYSSQPENT DFLERLTLVL bmy_04064T0/1-963 LDSQLVEFYA LRAEAYIQLC DFSSAAQNLR KASSSQPEHT DYLERLTLVL BACU016270/1-1368 LDSQLVEFYA LRAEAYIQLC DFSSAAQNLR KAYSSQPENT DYLERLTLVL 651 700 ENSP00000362386/1-873 YLQGQCLFEQ CAFLDALNVF SHAAELQPEK PCFRYRCMAC LLALKQHQAC ENSBTAP00000040770/1-984 YLKGQCLFEQ CAFLDALTVF SQASELQPEK FCFRYRCMAC LLALKKHREC ENSTTRP00000015602/1-867 YLKGQCLFEQ CAFLDALNVF SQASELQPEK FCFRYRCMAC LLALKRHREC bmy_04064T0/1-963 YLKGQCLFEQ CAFLDALNVF SQASELQPEK FCFRYRCMAC LLALKRHREC BACU016270/1-1368 YLKGQCLFER RAFLDALNVF SQASELQPEK FCFRYRCMAC LLALKRHREC 701 750 ENSP00000362386/1-873 LTLITNELKQ DTTNADVYIF RARLYNFLQK PHLCYRDLHS ALLLNPKHPQ ENSBTAP00000040770/1-984 LSFVTKEVKQ GTTNADVYIL RARLYNFFQK PNLCYRDLHS ALLLDPKHPQ ENSTTRP00000015602/1-867 LSFAAKEVEH GTANADVYIL RARLYNFFQQ PSLCHRDLHS ALLLDPRHPQ bmy_04064T0/1-963 LSFVTKEVKH GTTNADVYIL RARLYNFFQK PSLCHRDLHS ALLLDPKHPQ BACU016270/1-1368 LSFVTKEVKH GTTNADVYIL RARLYNFFQK PSLCHRDLHS ALLLDPKHPQ 751 800 ENSP00000362386/1-873 ARMLLQKMVA QAQQARQDAG ILAVQGKLQH ALQRINRAIE NNPLDPSLFL ENSBTAP00000040770/1-984 AKVLLQVMVG QAEQARQDAG VLAVQGKLQH ALQCINCAIE NNPLDPSFFL ENSTTRP00000015602/1-867 AKVLLKVLVG QAQEARQEAG VLAVQGKLQH ALQCINCAIE NNPLDPSFFL bmy_04064T0/1-963 AKVLLKVMVG QAQEARQDAG ILAVQGKLQH ALQ------- ---------- BACU016270/1-1368 AKVLLKVMVG QAQEARQDAG ILAVQGKLQH ALQCINRAIE NNPLDPSLFL 801 850 ENSP00000362386/1-873 FRGTMYRRLQ EFDGAVEDFL KVLDMVTEDQ EDMVRQAQRQ LLLTYNDFAV ENSBTAP00000040770/1-984 FRGTMYRRLQ DFDLAVEDFL KALDMMSDHQ EELVQQAQRQ LLLAYNDFAV ENSTTRP00000015602/1-867 FRGIMYRRLR EFDSAVEDFL KALDMMTEHQ EDLVQQAQRQ LLLAYNDLAV bmy_04064T0/1-963 --GIMYRRLW EFDSAVEDFL KALDMMTEHQ QDLVQQAQRQ LLLAYNDFAV BACU016270/1-1368 FRGIMYRRLR EFDSAVEDFL KALDMMTEHQ QDLVQQAQRQ LLLAYNDFAV 851 900 ENSP00000362386/1-873 HCYRQGAYQE GVLLLNKALR DEQQEKGLYI NRGDCFFQLG NLAFAEADYQ ENSBTAP00000040770/1-984 HCYMQGAYQE SVLLLNKALK DEQQEKGLYI NRGDCFFQLG NLTFAEADYQ ENSTTRP00000015602/1-867 HCYLQGAYQE SVLLLSKALK DEQREKGLYI NRGDCFFQLG NLTFAEADYQ bmy_04064T0/1-963 HCYMQGAYQE SVLLLNKALK DEQREKGLYI NRGDCFFQLG NLTFAEADYQ BACU016270/1-1368 HCYMQGAYQE GVLLLSKALK GEQREKGLYI NRGDCFFQLG NLTFAEADYQ 901 950 ENSP00000362386/1-873 QALALSPQDE GANTRMGLLQ EKMGFCEQRR KQFQKAENHF STAIRHNPQK ENSBTAP00000040770/1-984 QALALSPKDE GAHLRMGLLQ EKLGFCEHRS RQFQKAENHF SMAIQHNPQK ENSTTRP00000015602/1-867 QALALSPEDE GAHLRMDLLQ EKLGFCEQRR RQFQKTENHF SMAIQHNPQK bmy_04064T0/1-963 QALALSPKDE GAHLRMGLLQ EKLGFCEQRS RQFQKAENRF SMAIQHNPQK BACU016270/1-1368 QALALSPKDE GAHLRMGLLQ EKLGFCEQRS RQFQKAENRF SMAIQHNPQK 951 1000 ENSP00000362386/1-873 AQYYLYRAKS RQLLQNIFGA RQDVATVLLL NPKQPKLSLL MTNLFPGMSV ENSBTAP00000040770/1-984 PQYYLYRARS RQLMQNIFGA RQDVATVLLL DPKQPKLLPL MANLFPGMSV ENSTTRP00000015602/1-867 PQYYLYRTRS RQLTQNIFGA RQDVATVLLL DPKQPKLLPL MANLFPGLSV bmy_04064T0/1-963 PQYYLYRARS RQLMQNIFGA RQDVATVLLL DPKQPKLLPL MTNLFPGMSV BACU016270/1-1368 PQYYLYRARS RQLMQNIFGA RQDVATVLLL DPKQPKLLPL MTTLFPGMSV 1001 1050 ENSP00000362386/1-873 EEVLSTQIAH LARLQLEQMV EGSLQAGSPQ GIVGMLKRHE LERQKALALQ ENSBTAP00000040770/1-984 EEVLSSQVAN LARLQLERVV EHSMYTRAPQ DILGQLKDRE ---QRARAVI ENSTTRP00000015602/1-867 EELLNSQVAH LARLQLERVV EHSLQAGTPQ DIVGWLKERE LERQRAWALQ bmy_04064T0/1-963 EEVLNSQVAH LARLQLERVV EHSLQAGTPQ DIVGQLKERE LERQRARALQ BACU016270/1-1368 EEVLNSQVAH LARLQLERVV EHSLQAGTPQ DIVGQLKEQE LERQRARALQ 1051 1100 ENSP00000362386/1-873 HSWKQGEPLI ATSEELKATP EIPQVKPGSS EGEAEAPEEE EEKE--KEKK ENSBTAP00000040770/1-984 LSWKLEPPLL ETPKEMETPL QFPQAKPEGP EEEVQVPGKK E-KL--KPA- ENSTTRP00000015602/1-867 LSWKLEQPLF ETSKELEATH QSLQAQPEGP EEEAKAPGEK E-KL--EPA- bmy_04064T0/1-963 LSWKLEQPLF ETSKELEATR QSLQAKPEGP EEEAKAPVEK EVTLTCDPRG BACU016270/1-1368 LSWKLEQPLF KTSKELEDTR QSLQAKPEGP EEEAEAPGEK EEKL--EPG- 1101 1150 ENSP00000362386/1-873 EEKKSELIPS KVASLSDSYL DQTSSA---- ---SSMSFRT TGTSETEMSA ENSBTAP00000040770/1-984 --------PS KESSLTDSYI SQTSLG---- ---SILGFRT RSTSETETSS ENSTTRP00000015602/1-867 --------PS KERSLTDGYI SQTSSG---- ---SILGFRT TSTSETETST bmy_04064T0/1-963 ALSGWTYRAA ATVTVQPVIM QPVSCPRRSW SRVPAKRVRT TSTSETETST BACU016270/1-1368 --------PS KERSLTDSYI SQTSSG---- ---SILGFRT TSTSETETST 1151 1200 ENSP00000362386/1-873 ICQEYRSTSA TAVTFSDSSL LKTQSSDSGN NRE--ALSHG PRKIKATQGQ ENSBTAP00000040770/1-984 TGQEYRSTST TVVTVSDSSL LRTQSSDSGD SRKDLSLNHS PRETKSTPGH ENSTTRP00000015602/1-867 VCQEYGSTST TVVTFSDSSP LRTQCSDSRD KREDLSLSHS PRKTKSTPGH bmy_04064T0/1-963 VCQEYGSTST TVVTFSDSSL LRTQSSDLGD KREDLSLSHS PRKTKSTPGH BACU016270/1-1368 VCQEYGSTST TVVTFSDSSL LRTQSSDLGD KREDLSLSYS PRKTKSTPGH 1201 1250 ENSP00000362386/1-873 RQSLSKTEPT QSQRRNSSKT KA-TIHKRNS SKTKATQSQR RNSSK----- ENSBTAP00000040770/1-984 HQRPSKTEAA LIHSQRPSKT EAALIHSQRP SKTDTTQIQS QRPSKMDATQ ENSTTRP00000015602/1-867 SQRPSEPETI QVQSQRPSRT EA-ALSQRRP SRTEAIWVQS QRPSR----- bmy_04064T0/1-963 SQRPSEPEAI QVQSQRPSRT KAIQVQSQRP SRTEAIRVQS QRPSRTEAAL BACU016270/1-1368 SQRPSEPEAI QVQSQRPNRT EADQVQSQRP SRTEAIRVQS QRPSR----- 1251 1300 ENSP00000362386/1-873 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000040770/1-984 IRSQRPSKTD TTQIQSQRPS KMEASLIHSQ RPSKTDTTQI QSQRPSKTDA ENSTTRP00000015602/1-867 ---------- ---------- ---------- ---------- ---------- bmy_04064T0/1-963 --SQRPSRTE AN--QSQRPS RTEADQVQSQ RPSRTEAAQV QSRRPSKTKA BACU016270/1-1368 ---------- ---------- ---------- ---------- ---------- 1301 1350 ENSP00000362386/1-873 ---------- TRATQGQGQS SSKTEATQGQ RQSS------ ---------- ENSBTAP00000040770/1-984 TQIQSQRPSK TDTTQIQSQR PSKTDTAQIQ NQRPSKTDTT QIQSQRPSKT ENSTTRP00000015602/1-867 ---------- TETIWVQSQR PSRTEAIWVQ SQRP------ ---------- bmy_04064T0/1-963 T--RSRRPSG TEAIQVQSQR PSRTEAALGQ SQRPSRTEAD QVQSQRPSRA BACU016270/1-1368 ---------- TEAIRVQSQR P--------- ---------- ---------- 1351 1400 ENSP00000362386/1-873 ---------- ---------- ---------- ------SEIE ATQGPRQEPS ENSBTAP00000040770/1-984 DTTQIQSQRP SRTEATLIHS QRPSRTDATQ IQNQRPSRTE AAWSPRQKLN ENSTTRP00000015602/1-867 ---------- ---------- ---------- ------SRTE AAWSPRRKLD bmy_04064T0/1-963 KPAQVQSRRP SKTEAT--RS RRPRGTEATQ GQSQRSSRTE ATWSPRQKLN BACU016270/1-1368 ---------- ---------- ---------- ------SRTE ATWSPRQKLN 1401 1450 ENSP00000362386/1-873 KTKTTRSPRQ RPRKVKAARG RSWRPSKVDA TQGRSRGLLR SSTKTEAFYD ENSBTAP00000040770/1-984 KTQATQGSRR RLRKSKGADG QSWRLRKAAA TQDQSWRMIQ SPSKINTSYD ENSTTRP00000015602/1-867 ETKATQGSRQ RLRKAKGAHG QNWRPRKAGA TQDWSWRLIQ SPSKIKTFYD bmy_04064T0/1-963 KTKATQGSRQ RLRKAKGAHG QSWRPRKPGA TQDWSWRLIQ SPSKIKTFYD BACU016270/1-1368 KTKATQGSRQ RLRKAKGAHG QSWRPRKAGA TQDWSWRLIQ SPSKIKT-YD 1451 1500 ENSP00000362386/1-873 SNWSLSKTEY AQGQG--QRS SKAEGAQGKS QGMSSTSSKA ESTWGPSPSL ENSBTAP00000040770/1-984 SSWSPSNTEA TKGQAQSQRP SQSKAAQS-- --ASPGSSKT EVTWGLNPSL ENSTTRP00000015602/1-867 PSWSPCNTEA TEGQGQSQRP SQSKAAQSWS QSTSPGSGKT KVTWGLSPSL bmy_04064T0/1-963 PSWSPCNTEA TEGQGHSQRP SQPKAAQSWS QSTSPGSGKT EVTWGLSPSL BACU016270/1-1368 PSWSPCNTEA TEGQGHSQRP SQSKAAQSWS QGTSPGSGKT EITWGLSPSL 1501 1550 ENSP00000362386/1-873 SKTEVDQDLT YYEAV----- - ENSBTAP00000040770/1-984 SNMQTAQGPR QKPSPSSEAA L ENSTTRP00000015602/1-867 SNTQTTQGLS SQAAV----- - bmy_04064T0/1-963 SNTQTTQGLR QNPSPGS--- - BACU016270/1-1368 SNTQTTQGLR QNPSPGS--- -