KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:55 2014 Check: 00 .. Name: BACU011065/1-773 Len: 827 Check: 2358 Weight: 1.00 Name: ENSTTRP00000014130/1-750 Len: 827 Check: 7864 Weight: 1.00 Name: ENSBTAP00000040773/1-743 Len: 827 Check: 5183 Weight: 1.00 Name: bmy_06363T0/1-566 Len: 827 Check: 7755 Weight: 1.00 Name: ENSP00000326767/1-747 Len: 827 Check: 9484 Weight: 1.00 // 1 50 BACU011065/1-773 MVPGSEGPAR AGGLVADVVF VIEGTANLGP YFEGLRKHYL LPAIEYFNGG ENSTTRP00000014130/1-750 ---------- ---------- ---------- ---------- -----YFNGG ENSBTAP00000040773/1-743 MVPGSEGPAR AGGLVADVVF VIEGTANLGP YFEGLRKHYL LPAIEYFNGG bmy_06363T0/1-566 MVPGSEGPAR AGGLVADVVF VIEGTANLGP YFEGLRKHYL LPAIE----- ENSP00000326767/1-747 MVPGSEGPAR AGSVVADVVF VIEGTANLGP YFEGLRKHYL LPAIEYFNGG 51 100 BACU011065/1-773 PPAETDFGGD YGGTQYSLVV FNTVDCAPES YVQCHAPTSS AYEFVTWLDG ENSTTRP00000014130/1-750 PPAETDFGGD YGGTQYSLVV FNTVDCAPES YVQCHAPTSS AYEFVTWLDG ENSBTAP00000040773/1-743 PPAETDFGGD YGGTQYSLVV FNTVDCAPES YVQCHAPTSS AYEFVTWLDG bmy_06363T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSP00000326767/1-747 PPAETDFGGD YGGTQYSLVV FNTVDCAPES YVQCHAPTSS AYEFVTWLDG 101 150 BACU011065/1-773 IKFMGGGGES CSLIAEGLST ALQLFDDFKK MREQIGQTHR VCLLICNSPP ENSTTRP00000014130/1-750 IKFMGGGGES CSLIAEGLST ALQLFDDFRK MREQIGQTHR VCLLICNSPP ENSBTAP00000040773/1-743 IKFMGGGGES CSLIAEGLST ALQLFDDFKK MREQIGQTHR VCLLICNSPP bmy_06363T0/1-566 --FMGGGGES CSLIAEGLST ALQLFDDFKK MREQI----- ---------- ENSP00000326767/1-747 IKFMGGGGES CSLIAEGLST ALQLFDDFKK MREQIGQTHR VCLLICNSPP 151 200 BACU011065/1-773 YLLPAVESTT YSGCTTETLV QKIGERGIYF SIVSPRKLPA LRLLFEKAAP ENSTTRP00000014130/1-750 YLLPAVESTT YSGCTTETLV QKIGERGIYF SIVSPRKLPA LRLLFEKAAP ENSBTAP00000040773/1-743 YLLPAVESTT YSGCTTETLV QKIGERGIYF SIVSPRKLPA LRLLFEKAAP bmy_06363T0/1-566 ---------- ---------- ---------- ---------- ---------- ENSP00000326767/1-747 YLLPAVESTT YSGCTTENLV QQIGERGIHF SIVSPRKLPA LRLLFEKAAP 201 250 BACU011065/1-773 PAMLEPLQPP ADVSQDPRHM VLVRGLVLPV GGGSAPGPLQ PKQPVPLPPA ENSTTRP00000014130/1-750 PAMLEPLQPP ADVSQDPRHM VLVRGLVLPV GGGSAPGPLQ PKQPVPLPPA ENSBTAP00000040773/1-743 PAMLEPLQPP ADVSQDPRHM VLVRGLVLPV GGGSAPGPLQ PKQPVPLPPA bmy_06363T0/1-566 ---------- ---------- ---------W GGWSSPAP-- ---------- ENSP00000326767/1-747 PALLEPLQPP TDVSQDPRHM VLVRGLVLPV GGGSAPGPLQ SKQPVPLPPA 251 300 BACU011065/1-773 PPSGATLSAA PQQPLPPVPQ QYQVPGNLSA AQVAAQNAVE AAKNQKAGLG ENSTTRP00000014130/1-750 PPSGATLSAA PQQPLPPVPQ QYQVPGNLSA AQVAAQNAVE AAKNQKAGLG ENSBTAP00000040773/1-743 APAGATLSTA PQQPLPPVPQ QYQVPGNLSA AQVAAQNAVE AAKNQKAGLG bmy_06363T0/1-566 ---------- --------PL YHQVPGNLSA AQVAAQNAVE AAKNQKAGLG ENSP00000326767/1-747 APSGATLSAA PQQPLPPVPP QYQVPGNLSA AQVAAQNAVE AAKNQKAGLG 301 350 BACU011065/1-773 PRFSPINPLQ QAAPGVGPPY SQAQAPPLPP GPPGAPKPPP ASQPSLVSTV ENSTTRP00000014130/1-750 PRFPPISPLQ QAAAGAGPPY SQAQAPPLPP GPPGAPKPPP ASQPSLVSTV ENSBTAP00000040773/1-743 PRFSPINPLQ QATPGVGPPY SQTQATQLPP GPPGAPKPPP ASQPSLVSTV bmy_06363T0/1-566 PRFSPINPLQ QAAPGVGPPY SQAQAPPLPP GPPGAPKPPP ASQPSLVSTV ENSP00000326767/1-747 PRFSPITPLQ QAAPGVGPPF SQAPAPQLPP GPPGAPKPPP ASQPSLVSTV 351 400 BACU011065/1-773 APGPGLAPPA QPGAPSMAGT VAPGGVSGPS PAQLGAPALG GQQSVSNKLL ENSTTRP00000014130/1-750 APGPGLAPPA QPGAPSMAGT VAPGGVSGPS PAQLGAPALG GQQSVSNKLL ENSBTAP00000040773/1-743 APGPGLAPPA QPGAPSMAGT VAPGGVSGPS PAQLGAPALG GQQSVSNKLL bmy_06363T0/1-566 APGPGLAPPA QPGAPSMAGT VAPGGVSGPS PAQLGAPALG GQQSVSNKLL ENSP00000326767/1-747 APGSGLAPTA QPGAPSMAGT VAPGGVSGPS PAQLGAPALG GQQSVSNKLL 401 450 BACU011065/1-773 AWSGVLEWQE KPKPASVDAN TKLTRSLPCQ VYVNHGENLK TEQWPQKLYM ENSTTRP00000014130/1-750 AWSGVLEWQE KPKPASVDAN TKLTRSLPCQ VYVNHGENLX XXXXXXXXXX ENSBTAP00000040773/1-743 AWSGVLEWQE KPKPASVDAN TKLTRSLPCQ VYVNHGENLK TEQWPQKLIM bmy_06363T0/1-566 AWSGVLEWQE KPKPASVDAN TKLTRSLPCQ VYVNHGENLK TEQWPQKLIM ENSP00000326767/1-747 AWSGVLEWQE KPKPASVDAN TKLTRSLPCQ VYVNHGENLK TEQWPQKLIM 451 500 BACU011065/1-773 QLIPQQLLTT LGPLFRNSRM VQFHFTNKDL DSLKGLYRIM GNGFAGCMLF ENSTTRP00000014130/1-750 XXXXXXXXTT LGPLFRNSRM VQFHFTNKDL DSLKGLYRIM GNGFAGCVHF ENSBTAP00000040773/1-743 QLIPQQLLTT LGPLFRNSRM VQFHFTNKDL DSLKGLYRIM GNGFAGCVHF bmy_06363T0/1-566 QLIPQQLLTT LGPLFRNSRM VQFHFTNKDL DSLKGLYRIM GNGFAGCVHF ENSP00000326767/1-747 QLIPQQLLTT LGPLFRNSRM VQFHFTNKDL ESLKGLYRIM GNGFAGCVHF 501 550 BACU011065/1-773 PHISPCEVRV LMLLYSSKKK IFMGLIPYDQ SGFVNAIRQV ITTRKQAVGP ENSTTRP00000014130/1-750 PHTAPCEVRV LMLLYSSKKK IFMGLIPYDQ SGFVNGIRQV ITNHKQV--- ENSBTAP00000040773/1-743 PHTAPCEVRV LMLLYSSKKK IFMGLIPYDQ SGFVNGIRQV ITNHKQV--- bmy_06363T0/1-566 PHTAPCEVRV LMLLYSSKKK IFMGLIPYDQ SGFVNGIRQV ITNHKQV--- ENSP00000326767/1-747 PHTAPCEVRV LMLLYSSKKK IFMGLIPYDQ SGFVNGIRQV ITNHKQV--- 551 600 BACU011065/1-773 GGVAGPVQMV NNKFLAWSGV MEWQEPRPEP NSRSKRWLPS HIYVNQGEIL ENSTTRP00000014130/1-750 ---------- ---------- ---QQQKLE- QQRGMG--AQ QAPPGLGPIL ENSBTAP00000040773/1-743 ---------- ---------- ---QQQKLE- QQRGMG--AQ QAPPGLGPIL bmy_06363T0/1-566 ---------- ---------- ---QQQKLE- QQRGMG--AQ QAPPGLGPIL ENSP00000326767/1-747 ---------- ---------- ---QQQKLEQ QQRGMG--GQ QAPPGLGPIL 601 650 BACU011065/1-773 RTEQWPRKLY MQLIPQQLLV SGEGGTRLAS ALGPWGRLPV QQVEVGGAVG ENSTTRP00000014130/1-750 EDQARPSQNL LQLRPPQPQP QGTVGA--ST ATGQPQPQGA AQAPPGAPQG ENSBTAP00000040773/1-743 EDQARPSQNL LFFRPPQPQP QGTVGA--SA AAGQPQPQGA APAPPGAPQG bmy_06363T0/1-566 EDQARPSQNL LQLRPPQPQP QGTVGA--ST ATGQPQPQGA AQAPPGAPQG ENSP00000326767/1-747 EDQARPSQNL LQLRPPQPQP QGTVGA--SG ATGQPQPQGT AQPPPGAPQG 651 700 BACU011065/1-773 RXXXXXXXXX XXXXXXXXXX XXXXXFRNSR LVQFHFTKDL ETLK-SLCRI ENSTTRP00000014130/1-750 PPGAAPGPPP PGPILRPQNP GANPQLRSLL LNPPPPQTGV PPPQASLHHL ENSBTAP00000040773/1-743 PPGAAPGPPP PGPSSGP-SP GANPQLRILL LNPPPVRFGE GXSQGSRCS- bmy_06363T0/1-566 PPGAAPGPPP PGPILRPQNP GANPQLRSLL LNPPPPQTGV PPPQASLHHL ENSP00000326767/1-747 PPGAASGPPP PGPILRPQNP GANPQLRSLL LNPPPPQTGV PPPQASLHHL 701 750 BACU011065/1-773 MDNGFAGCVH FSYKASCEVR V-LMLLYSSE K-KIF----- -------IGL ENSTTRP00000014130/1-750 QPPGAPALLP PPHQGLGQPQ LGPPLLHPPP P-DGVRRSDA AQRGSPGPGR ENSBTAP00000040773/1-743 -PPGSPPLCP LGLLGKSQPC LGPPEAEPPG P-QGL----- -------PGD bmy_06363T0/1-566 QPPGAPALLP PPHQGLGQPQ LGPPLLHPPP PAQSW----- -------TAQ ENSP00000326767/1-747 QPPGAPALLP PPHQGLGQPQ LGPPLLHPPP A-QSW----- -------PAQ 751 800 BACU011065/1-773 IPH-----DQ SNFV------ ---------- -NGIRRVIAN ---QQQVL-- ENSTTRP00000014130/1-750 SPQSPPLPLD SPTTRQEAVA FHVSTKSGKT KERTRGPRVS REMGASLFLC ENSBTAP00000040773/1-743 AVPSHCPPGQ MLLS------ ---------- -GGPRGPVPQ PGLQPSVM-- bmy_06363T0/1-566 LPPRAPLPGQ MLLS------ ---------- -GGPRGPVPQ PGLQPSVM-- ENSP00000326767/1-747 LPPRAPLPGQ MLLS------ ---------- -GGPRGPVPQ PGLQPSVM-- 801 850 BACU011065/1-773 ---------- --QRNLEQEQ QQRGMGG ENSTTRP00000014130/1-750 GGEEHAYVLN MQKNRVCVER IQPEASL ENSBTAP00000040773/1-743 ---------- --EDDILMDL I------ bmy_06363T0/1-566 ---------- --EDDILMDL I------ ENSP00000326767/1-747 ---------- --EDDILMDL I------