KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:56 2014 Check: 00 .. Name: bmy_12728T0/1-573 Len: 663 Check: 7321 Weight: 1.00 Name: BACU007003/1-662 Len: 663 Check: 6025 Weight: 1.00 Name: ENSTTRP00000006328/1-593 Len: 663 Check: 5396 Weight: 1.00 Name: ENSP00000377840/1-598 Len: 663 Check: 6826 Weight: 1.00 Name: ENSBTAP00000040778/1-571 Len: 663 Check: 6931 Weight: 1.00 // 1 50 bmy_12728T0/1-573 MVQKTSMSRG PYPSSQEIPM EVFDPSPQGK YSKRKGRFKR SDGSTSSDTT BACU007003/1-662 MVQKTSMSRG PYPSSQEIPM EVFDPSPQGK YSKRKGRFKR SDGSTSSDTT ENSTTRP00000006328/1-593 MVQKTSMSR- PYPSSQEIPM EVFDPSPQGK YSKRKGRFKR SDGSTSSDTT ENSP00000377840/1-598 MVQKTSMSRG PYPPSQEIPM EVFDPSPQGK YSKRKGRFKR SDGSTSSDTT ENSBTAP00000040778/1-571 ---------- ---------- -------QGK YSKRKGRFKR SDGSTSSDTT 51 100 bmy_12728T0/1-573 SNSFVRQ--- ---------- ---------- ---------- -------TKP BACU007003/1-662 SNSFVRQGSA ESYTSRPSDS DVSLEEDREA LRKEAERQAL AQLEKAKTKP ENSTTRP00000006328/1-593 SNSFVRQGSA ESYTSRPSDS DVSLEEDREA LRKEAERQAL AQLEKAKTKP ENSP00000377840/1-598 SNSFVRQGSA ESYTSRPSDS DVSLEEDREA LRKEAERQAL AQLEKAKTKP ENSBTAP00000040778/1-571 SNSFVRQGSA ESYTSRPSDS DVSLEEDREA LRKEAERQAL AQLEKAKTKP 101 150 bmy_12728T0/1-573 VAFAVRTNVG YNPSPGD--- ---------- -------EKY NNDWWIGRLV BACU007003/1-662 VAFAVRTNVG YNPSPGDEVP VQGVAITFEP KDFLHIKEKY NNDWWIGRLV ENSTTRP00000006328/1-593 VAFAVRTNVG YNPSLGDEVP VQGVAITFEP KDFLHIKEKY NNDWWIGRLV ENSP00000377840/1-598 VAFAVRTNVG YNPSPGDEVP VQGVAITFEP KDFLHIKEKY NNDWWIGRLV ENSBTAP00000040778/1-571 VAFAVRTNVG YNPSPGDEVP VQGVAITFEP KDFLHIKEKY NNDWWIGRLV 151 200 bmy_12728T0/1-573 KEGCEVGFIP SPVKLDSLRL LQEQKLRQNR LSSSKSGDNS SSSLGDVVTG BACU007003/1-662 KEGCEVGFIP SPVKLDSLRL LQEQKLRQNR LSSSKSGDNS SSSLGDVVTG ENSTTRP00000006328/1-593 KEGCEVGFIP SPVKLDSLRL LQEQKLRQNR LSSSKSGDNS SSSLGDVVTG ENSP00000377840/1-598 KEGCEVGFIP SPVKLDSLRL LQEQKLRQNR LGSSKSGDNS SSSLGDVVTG ENSBTAP00000040778/1-571 KEGCEVGFIP SPVKLDSLRL LQEQKLRQNR LSSSKSGDNS SSSLGDVVTG 201 250 bmy_12728T0/1-573 TRRPTPPASG NEMTNLAFEL DPLELEDEEV ELGEHSASAK TSVSSVTTPP BACU007003/1-662 TRRPTPPASG NEMTNLAFEL DPLELEDEEA ELGEHSASAK TSVSSVTTPP ENSTTRP00000006328/1-593 TRRPTPPASA KQKQ------ ---------- ---------- ---------- ENSP00000377840/1-598 TRRPTPPASA KQKQ------ ---------- ---------- ---------- ENSBTAP00000040778/1-571 TRRPTPPASA KQKQ------ ---------- ---------- ---------- 251 300 bmy_12728T0/1-573 PHGKRIPFFK KTEHVPPYDV VPSMRPIILV GPSLKGYEVT DMMQKALFDF BACU007003/1-662 PHGKRIPFFK KTEHVPPYDV VPSMRPIILV GPSLKGYEVT DMMQKALFDF ENSTTRP00000006328/1-593 ---------K LTEHVPPYDV VPSMRPIILV GPSLKGYEVT DMMQKALFDF ENSP00000377840/1-598 ---------K STEHVPPYDV VPSMRPIILV GPSLKGYEVT DMMQKALFDF ENSBTAP00000040778/1-571 ---------K STEHVPPYDV VPSMRPIILV GPSLKGYEVT DMMQKALFDF 301 350 bmy_12728T0/1-573 LKHRFDGRIS ITRVTADISL AKRSVLNNPS KHIIIERSNT RSSLAEVQSE BACU007003/1-662 LKHRFDGRIS ITRVTADISL AKRSVLNNPS KHIIIERSNT RSSLAEVQSE ENSTTRP00000006328/1-593 LKHRFDGRIS ITRVTADISL AKRSVLNNPS KHIIIERSNT --SLAEVQSE ENSP00000377840/1-598 LKHRFDGRIS ITRVTADISL AKRSVLNNPS KHIIIERSNT RSSLAEVQSE ENSBTAP00000040778/1-571 LKHRFDGRIS ITRVTADISL AKRSVLNNPS KHIIIERSNT RSSLAEVQSE 351 400 bmy_12728T0/1-573 IERIFELART LQLVALDADT INHPAQLSKT SLAPII---- -----VLQRL BACU007003/1-662 IERIFELART LQLVALDADT INHPAQLSKT SLAPIIVYIK ITSPKVLQRL ENSTTRP00000006328/1-593 IERIFEV-RT LQLVALDADT INHPAQLSKT SLAPIIVYIK ITSPKVLQRL ENSP00000377840/1-598 IERIFELART LQLVALDADT INHPAQLSKT SLAPIIVYIK ITSPKVLQRL ENSBTAP00000040778/1-571 IERIFELART LQLVALDADT INHPAQLSKT SLAPIIVYIK ITSPKVLQRL 401 450 bmy_12728T0/1-573 IKSRGKSQSK HLNVQIAASE KLAQCPPEMF DIILDENQLE DACEHLAEYL BACU007003/1-662 IKSRGKSQSK HLNVQIAASE KLAQCPPEMF DIILDENQLE DACEHLAEYL ENSTTRP00000006328/1-593 IKSRGKSQSK HLNVQIAASE KLAQCPPEMF DIILDENQLE DACEHLAEYL ENSP00000377840/1-598 IKSRGKSQSK HLNVQIAASE KLAQCPPEMF DIILDENQLE DACEHLAEYL ENSBTAP00000040778/1-571 IKSRGKSQSK HLNVQIAASE KLAQCPPEMF DIILDENQLE DACEHLAEYL 451 500 bmy_12728T0/1-573 EAYWKATHPP SSTPPNPL-- ---------- --------LN RTIATAALAA BACU007003/1-662 EAYWKATHPP SSTPPNPLXX XXXXXXXXXX XXXXXXXXLN RTIAPAALAA ENSTTRP00000006328/1-593 EAYWKATHPP SSTPPNPL-- ---------- --------LN RTMATAALAA ENSP00000377840/1-598 EAYWKATHPP SSTPPNPL-- ---------- --------LN RTMATAALAA ENSBTAP00000040778/1-571 EAYWKATHPP SSTPPNPL-- ---------- --------LN RTMATAALAA 501 550 bmy_12728T0/1-573 SPAPVSNLQG PYLASGDQSL ERATGEHASV HEYPGELGQP PGLYPSSQPP BACU007003/1-662 SPAPVSNLQG PYLASGDQSL ERATGEHASV HEYPGELGQP PGLYPSSQPP ENSTTRP00000006328/1-593 SPAPVSNLQG PYLASGDQSL ERATGEHASV HEYPGELGQP PGLYPSSQPP ENSP00000377840/1-598 SPAPVSNLQG PYLASGDQPL ERATGEHASM HEYPGELGQP PGLYPSSHPP ENSBTAP00000040778/1-571 SPAPVSNLQG PYLASGDQSL ERATGEHASV HEYPGELGQP PGLYPSSHPP 551 600 bmy_12728T0/1-573 GRAGTLRALS RQDTFDADTP GNRNSAYTEL GDSCVDMETD PSEGPGLGDP BACU007003/1-662 GRAGTLRALS RQDTFDADTP GNRNSAYTEL GDSCVDMETD PSEGPGLGDP ENSTTRP00000006328/1-593 GRAGTLRALS HQDTFDADTP GNRNSAYTEL GDSCVDMETD PSEGPGLGDP ENSP00000377840/1-598 GRAGTLRALS RQDTFDADTP GSRNSAYTEL GDSCVDMETD PSEGPGLGDP ENSBTAP00000040778/1-571 GRAGTLRALS RQDTFDADTP GNRNSAYTEL GDSCVDMETD PSEGPGLGDP 601 650 bmy_12728T0/1-573 AGGSTPPARQ GSWED-EEDY EEELTNNRNR GRNKARYCAE GGGPVLGRNK BACU007003/1-662 AGGSTPPARQ GSWED-EEDY EEELTNNRNR GRNKARYCAE GGGPVLGRNK ENSTTRP00000006328/1-593 AGGSTPPARQ GSWED-EEDY EEELTNNRNR GRNKARYCAE GGGPVLGRNK ENSP00000377840/1-598 AGGGTPPARQ GSWEDEEEDY EEELTDNRNR GRNKARYCAE GGGPVLGRNK ENSBTAP00000040778/1-571 AGGSTPPARQ GSWEDEEEDY EEELTDNRNR GRNKARYCAE GGGPVLGRNK 651 700 bmy_12728T0/1-573 NELQGWGRGV YIR BACU007003/1-662 NELQGWGRGV YIR ENSTTRP00000006328/1-593 NELQGWGRGV YIR ENSP00000377840/1-598 NELEGWGRGV YIR ENSBTAP00000040778/1-571 NELEGWGRGV YIR