KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:50:57 2014 Check: 00 .. Name: ENSBTAP00000040783/1-804 Len: 850 Check: 1324 Weight: 1.00 Name: ENSP00000402935/1-817 Len: 850 Check: 6579 Weight: 1.00 Name: bmy_11620T0/1-544 Len: 850 Check: 6089 Weight: 1.00 Name: ENSTTRP00000001999/1-764 Len: 850 Check: 6515 Weight: 1.00 // 1 50 ENSBTAP00000040783/1-804 -KLLSRTNKP NLVQDAENVG LLPLFKLSNW FGTTLLSKQK DFNKRIPTLW ENSP00000402935/1-817 MYHSLSETRH PLQPEEQEVG IDPLSSYSNK SGGDSNKNGR RTSSTLDSEG bmy_11620T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001999/1-764 ---------- ------QEVG IDPLLSYSHK PGGDSNQNGR RTSSTLDSDG 51 100 ENSBTAP00000040783/1-804 -FLASRKEWE ELFVNNNYLA TIRQKGINGQ LRSSRFRSIC WKLFLCVLPQ ENSP00000402935/1-817 TFNSYRKEWE ELFVNNNYLA TIRQKGINGQ LRSSRFRSIC WKLFLCVLPQ bmy_11620T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001999/1-764 TFNSYRKEWE ELFVNNNYLA TVRQKGINGQ LRSSRFRSIC WKLFLCVLPQ 101 150 ENSBTAP00000040783/1-804 DKSQWISKIK ELRAWYSSVK EIHITNPRKA VGQQDLMINN PLSQDEGSLW ENSP00000402935/1-817 DKSQWISRIE ELRAWYSNIK EIHITNPRKV VGQQDLMINN PLSQDEGSLW bmy_11620T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001999/1-764 DKSQWINRIK ELRAWYSNIK EIHITNPRKV VGQQDLMINN PLSQDEGSLW 151 200 ENSBTAP00000040783/1-804 NKFFQDKELR SMIEQDVKRT FPEMQFFQQE SVRKILTDVL FCYARENEQL ENSP00000402935/1-817 NKFFQDKELR SMIEQDVKRT FPEMQFFQQE NVRKILTDVL FCYARENEQL bmy_11620T0/1-544 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000001999/1-764 NKFFQDKELR SMIEQDVKRT FPEMQFFQQE NVRKILTDVL FCYARENEQL 201 250 ENSBTAP00000040783/1-804 LYKQGMHELL APIVFTLHCD HQAFLHASES AQPSEEMKTL LNPEYLEHDA ENSP00000402935/1-817 LYKQGMHELL APIVFVLHCD HQAFLHASES AQPSEEMKTV LNPEYLEHDA bmy_11620T0/1-544 ---------- ---------- ---------- ------MKTL LNPEYLEHDA ENSTTRP00000001999/1-764 LYKQGMHELL APMVFTLHCD HQAFLHASES AQPSEEMKTL LNPEYLEHDA 251 300 ENSBTAP00000040783/1-804 YAMFSQLMET AEPWFSTFEH DGQKGKETLM PPIPFARPQD LGPTIAIVTK ENSP00000402935/1-817 YAVFSQLMET AEPWFSTFEH DGQKGKETLM TPIPFARPQD LGPTIAIVTK bmy_11620T0/1-544 YAMFSQLMET AEPWFSTFEH DGQKGKETLM TPIPFARPQD LGPTVAIVTK ENSTTRP00000001999/1-764 YAMFSQLMET AEPWFSTFEH DGQKGKETLM TPIPFARPQD LGPTVAIVTK 301 350 ENSBTAP00000040783/1-804 VNQIQDQLLK KHDIELYMHL NRLEIAPQIY GL-------- ---------- ENSP00000402935/1-817 VNQIQDHLLK KHDIELYMHL NRLEIAPQIY GL-------- ---------- bmy_11620T0/1-544 VNQIQDHLLK KHDIELYMHL NRLEIAPQIY GLSEWLPSNF LKEMPSSSLV ENSTTRP00000001999/1-764 VNQIQDHLLK KHDIELYMHL NRLEIAPQIY GL-------- ---------- 351 400 ENSBTAP00000040783/1-804 ----RWVRLL FGREFPLQDL LVVWDALFAD GLTLTLVDYV FVAMLLYIRD ENSP00000402935/1-817 ----RWVRLL FGREFPLQDL LVVWDALFAD GLSLGLVDYI FVAMLLYIRD bmy_11620T0/1-544 VEPKRWVRLL FGREFPLQDL LVVWDALFAD GLSLSLVDYI FIAMLLYIRD ENSTTRP00000001999/1-764 ----RWVRLL FGREFPLQDL LVVWDALFAD GLSLSLVDYI FIAMLLYIRD 401 450 ENSBTAP00000040783/1-804 ALISSNYQTC LGLLMHYPLI GDVHSLILKA LFLRDPKRNP RPVTYQFHPN ENSP00000402935/1-817 ALISSNYQTC LGLLMHYPFI GDVHSLILKA LFLRDPKRNP RPVTYQFHPN bmy_11620T0/1-544 ALISSNYQTC LGLLMHYPLI GDVHSLILKA LFLRDPKKNP RPVTYQFHPN ENSTTRP00000001999/1-764 ALISSNYQTC LGLLMHYPLI GDVHSLILKA LFLRDPKRNP RPVTYQFHPN 451 500 ENSBTAP00000040783/1-804 LDYYKARGAD LMNKSRTNAK GAPLNINKVS NSLINFGRKL ISPAAAPGGA ENSP00000402935/1-817 LDYYKARGAD LMNKSRTNAK GAPLNINKVS NSLINFGRKL ISPAMAPGSA bmy_11620T0/1-544 LDYYKARGAD LMNKSRTSAK GAPLNINKVS TSLMNFGRKL ISPATAPCGA ENSTTRP00000001999/1-764 LDYYKARGAD LMNKSRTSAK GAPLNINKVS TSLMNFGRKL ISPAAAPGGA 501 550 ENSBTAP00000040783/1-804 GGPVAAGGAG APSPAAAPTR TLAEAPRHAL --QQQQQRLM KSESMPVQLN ENSP00000402935/1-817 GGPVPGGNSS SSSSVVIPTR TSAEAPSHHL QQQQQQQRLM KSESMPVQLN bmy_11620T0/1-544 DGPVPGGSGG TSSPAVVPPR TLAEAPKHPL ---QQQQRLM KSESMPVQLN ENSTTRP00000001999/1-764 DGPVPGSSGG TSSPAVVPTR TLAEAPKHPL ---QQQQRLM KSESMPVQLN 551 600 ENSBTAP00000040783/1-804 KGNPGDVVTG SDAQVSVPVQ TLTDLPGQSS KNISSSPSIE SLPGGREFTG ENSP00000402935/1-817 K---GDVVTG SDAQVSVPVQ TLTDLQGLSS KNISSSPSVE SLPGGREFTG bmy_11620T0/1-544 K---GDVVTG SDAQVSVPVQ TLTDLPGQSS KNIRSSPSIE SLPGGREVTG ENSTTRP00000001999/1-764 K--------- ---------- ------GQSS KNIRSSPSIE SLPGGREFTG 601 650 ENSBTAP00000040783/1-804 SPPSSAAKKD SFFSNISRSR SHSKTMGRRE SEEELEAQIS FLQGQLNDLD ENSP00000402935/1-817 SPPSSATKKD SFFSNISRSR SHSKTMGRKE SEEELEAQIS FLQGQLNDLD bmy_11620T0/1-544 SPPSSATKKD SFFSNISRSR SHSKTMGRKE SEEELEAQIS LLQGQLNDLD ENSTTRP00000001999/1-764 SPPSSATKKD SFFSNISRSR SHSKTMGRKE SEEELEAQIS LLQGQLNDLD 651 700 ENSBTAP00000040783/1-804 AMCKYCAKVM DTHLVNIQEV ILQENLEKED QILVSLAGLK QIKDILKGSL ENSP00000402935/1-817 AMCKYCAKVM DTHLVNIQDV ILQENLEKED QILVSLAGLK QIKDILKGSL bmy_11620T0/1-544 AMCKYCAKVM DTHLGNIQEV ILQENLEKED QILVSLAGLK QAR------- ENSTTRP00000001999/1-764 AMCKYCAKVM DTHLVNIQEV ILQENLEKED QILVSLAGLK QIKDILKGSL 701 750 ENSBTAP00000040783/1-804 RFNQSQLEAE DNEQISISDD HYCSSGAAQ- -------QVP GSQGGAPPAA ENSP00000402935/1-817 RFNQSQLEAE ENEQITIADN HYCSSGQGQG RGQGQSVQMS GAIKQASSET bmy_11620T0/1-544 ---------- ---------- ---------- ---------- -------SAA ENSTTRP00000001999/1-764 RFNQSQLEAE ENEQITISDD HYCSSGQG-- -------HLP RATKQAPSAA 751 800 ENSBTAP00000040783/1-804 P-GRRERPGA DDFVLVSKDC EERGAGLSPA GQAQPLRPLR GAARPV---- ENSP00000402935/1-817 P-GCTDRGNS DDFILISKDD DGSSARGSFS GQAQPLRTLR STSGKSQAPV bmy_11620T0/1-544 P-GRREKGDT DDFILVSKDD EGGGATAPPA GRAQAPRPLQ SLARRA---- ENSTTRP00000001999/1-764 PPGRREKGDV E--FISSKDD EGGSVRAPPV GQAQAPRPLR S--GPA---- 801 850 ENSBTAP00000040783/1-804 ---LVFSDPL TGPASASSS- -NPSS--SPD DDSSGHSKDS GFTIVSPLDL ENSP00000402935/1-817 CSPLVFSDPL MGPASASSS- -NPSS--SPD DDS---SKDS GFTIVSPLDI bmy_11620T0/1-544 ---RVFSDPL TGPASASASS GSPSS--SPD DDSSGNSKDS GFTIVSPLDL ENSTTRP00000001999/1-764 ---PVFSDPL TGPAAASASS GSPSSSPSPD DDSSGNSKDS GFTIVSPLDL