KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:57 2014 Check: 00 .. Name: ENSTTRP00000005259/1-492 Len: 723 Check: 6498 Weight: 1.00 Name: ENSP00000346378/1-493 Len: 723 Check: 2976 Weight: 1.00 Name: bmy_07857T0/1-723 Len: 723 Check: 2769 Weight: 1.00 Name: ENSBTAP00000040787/1-486 Len: 723 Check: 4941 Weight: 1.00 Name: BACU015943/1-438 Len: 723 Check: 1504 Weight: 1.00 // 1 50 ENSTTRP00000005259/1-492 ML-------- ---------- ---------- ---------- ---------- ENSP00000346378/1-493 ML-------- ---------- ---------- ---------- ---------- bmy_07857T0/1-723 MISLVRVCAP RTFAWRIFRR LMSSQLSYDV SVRAADLAPP PDLRTPTRGN ENSBTAP00000040787/1-486 ML-------- ---------- ---------- ---------- ---------- BACU015943/1-438 ML-------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000005259/1-492 ---------- ---------- ---------- ---------- ---------- ENSP00000346378/1-493 ---------- ---------- ---------- ---------- ---------- bmy_07857T0/1-723 WGIQTAVFTR HLSTGGAAQA GPFPPPGPGP CPAPYLCGAS WPGRFQRREA ENSBTAP00000040787/1-486 ---------- ---------- ---------- ---------- ---------- BACU015943/1-438 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000005259/1-492 ---------- --GKDYMLA- ---------- ---------- ---------- ENSP00000346378/1-493 ---------- --GKDYMLA- ---------- ---------- ---------- bmy_07857T0/1-723 GLVGAAAPEA SWGRDQGYAG QGLHAGHHSG QLRWCAQRVP MGGSGAEGGR ENSBTAP00000040787/1-486 ---------- --GKDYMLA- ---------- ---------- ---------- BACU015943/1-438 ---------- --GKDYMLA- ---------- ---------- ---------- 151 200 ENSTTRP00000005259/1-492 ---------- ---------- --------II LVNCDDDLWG DQSLEGEPGL ENSP00000346378/1-493 ---------- ---------- --------II LVNCDDDLWG DHSLEVEAGL bmy_07857T0/1-723 GSAKGYPSLK DREGRTSRSE DQGTNEPRSL HCSIQDDLWG DQSLEGEPGL ENSBTAP00000040787/1-486 ---------- ---------- --------II LVNCDDDLWG DQSLEGEPGL BACU015943/1-438 ---------- ---------- --------II LVNCDDDLWG DQSLEGEPGL 201 250 ENSTTRP00000005259/1-492 PPGWRKIRDA AGTYYWHVPS GSTQWQRPTW ESGDAEDPGT KTEGIWGLRP ENSP00000346378/1-493 PPGWRKIHDA AGTYYWHVPS GSTQWQRPTW ELGDAEDPGT GTEGIWGLRP bmy_07857T0/1-723 PPGWRKIRDA AGTYYWHVPS GSTQWQRPTW ESGDAEDAGT KTEGIWGLRP ENSBTAP00000040787/1-486 PPGWRKIRDA AGTYYWHVPS GSTQWQRPTW ESGDAEDPGK KTEGIWGLRP BACU015943/1-438 PPGWRKIRDA AGTYYWHVPS GSTQWQRPTW ESGDAEDAGT ---------- 251 300 ENSTTRP00000005259/1-492 PKGRSFSSLE NSLDR----- ---------- -------SNS LSWYGEESYI ENSP00000346378/1-493 PKGRSFSSLE SSLDR----- ---------- -------SNS LSWYGGESYI bmy_07857T0/1-723 PKGRSFSSLE SSLDRSLVLT IVPSVGIVVL LRALLYSSNS LSWYGEESYI ENSBTAP00000040787/1-486 PKGRSFSSLE SSLDQ----- ---------- -------SNS LSWYGEESYI BACU015943/1-438 ---------- ---------- ---------- ---------- ---------- 301 350 ENSTTRP00000005259/1-492 QRMEPGA-CF AVRSLGWVEV PEEDLVPGKS SIAVNNCIQQ LAQTRSQSQP ENSP00000346378/1-493 QSMEPGAKCF AVRSLGWVEV PEEDLAPGKS SIAVNNCIQQ LAQTRSRSQP bmy_07857T0/1-723 QRMEPGAKCF AVRSLGWVEV PEEDLVPGKS SIAVNNCIQQ LAQTRSQSQP ENSBTAP00000040787/1-486 QRMEPGAKCF AVRSLGWVEV PEEDLVPGKS SIAVNNCIQQ LAQTRSRSQP BACU015943/1-438 --------CF AVRSLGWVEV PEEDLVPGKS SIAVNNCIQQ LAQTCSQSQP 351 400 ENSTTRP00000005259/1-492 PDGTWGEGQN MLMILKKDVM SLVNPLDHSL IHRQPLVHIR VWG------- ENSP00000346378/1-493 PDGAWGEGQN MLMILKKDAM SLVNPLDHSL IHCQPLVHIR VWG------- bmy_07857T0/1-723 PDGAWGEGQN MLMILKKDVM SLVNPLDHSL IHRQPLVHIR VWGPLTCTQA ENSBTAP00000040787/1-486 PDGAWGEGQN MLMILKKDAM SLVNPLDHSL IHCQPLVHIR VWG------- BACU015943/1-438 PDGAWGEGQN MLMILKKDVM SLVNPLDHSL IHHQPLVHIR VWG------- 401 450 ENSTTRP00000005259/1-492 ---------V G----SSKGR ---------- ---------D SPISDPARDF ENSP00000346378/1-493 ---------V G----SSKGR ---------- ---------D SPISAPARDF bmy_07857T0/1-723 LPPLPGTALV GEGGPAQQGQ MGESLRGWAD SLLCSHMLLE HPISDPARDF ENSBTAP00000040787/1-486 ---------V G----SSKGR ---------- ---------D -------RDF BACU015943/1-438 ---------V G----SSKGR ---------- ---------- --------DF 451 500 ENSTTRP00000005259/1-492 AFVAGDKDSC MLKCHVFRCD VPAKAIASAL HGLCAQILSE RVGVSGDSPC ENSP00000346378/1-493 AFVASDKDSC MLKCHVFCCD VPAKAIASAL HGLCAQILSE RVEVSGDASC bmy_07857T0/1-723 AFVAGDKDSC MLKCHVFRCD VPAKAIASAL HGLCAQILSE RVGVSGDSPC ENSBTAP00000040787/1-486 AFVAGDKDSC MLKCHVFRCD VPAKAIASAL HGLCAQILSE RVEVSGDSPC BACU015943/1-438 AFVAGDKDSC MLKCHVFRCD VPAKAISSAL HGLCAQILSE RVGVSGDSPC 501 550 ENSTTRP00000005259/1-492 CSLDPISPED LPRQXXXXXX XXXXXXXXXX XXXXXXXXXX XXXMDVMNAA ENSP00000346378/1-493 CSPDPISPED LPRQVELLDA VSQAAQKYEA LYMGTLPVTK AMGMDVLNEA bmy_07857T0/1-723 CSLDPISPED LPRQVELLDA VSQAAQKYEA LYMGTLPVTK AMGMDMLNEA ENSBTAP00000040787/1-486 CSLDPITPED LPRQVELLDA VSQAAQKYEA LYMGTLPVTK AMGMDVLNEA BACU015943/1-438 CSLDPISPED LPRQVELLDA VSQAAQKYEA LYMGTLPVTK AMGMDVLNEA 551 600 ENSTTRP00000005259/1-492 IGTLTTHGDR DAWVPAMLSI SDSLMTAHPI QAEAGAEEEP LWQCPVRLVT ENSP00000346378/1-493 IGTLTARGDR NAWVPTMLSV SDSLMTAHPI QAEASTEEEP LWQCPVRLVT bmy_07857T0/1-723 IGTLTTHGDR DTWVPAMLSV SDSLMTAHPI QAKAGAEEEP LWQCPVRLVT ENSBTAP00000040787/1-486 IGTLTTRGDQ DTWVPAMLSV SDSVMTAHPI QAEAGAEEEP LWQCPVRLVT BACU015943/1-438 IGTLTTHGDR DTWVPAMLSV SDSLMTAHPI QAKAGAEEEP LWQCPVRLVT 601 650 ENSTTRP00000005259/1-492 FIGVGRDPHT FGLIADLGRQ SFQCAAFWCQ PHAGGLSEAV QAACMVQYQK ENSP00000346378/1-493 FIGVGRDPHT FGLIADLGRQ SFQCAAFWCQ PHAGGLSEAV QAACMVQYQK bmy_07857T0/1-723 FIGVGRDPHT FGLIADLGRQ SFQCAAFWCQ PHAGGLSEAV QAACMVQYQK ENSBTAP00000040787/1-486 FIGVGRDPHT FGLIADLGHQ SFQCAAFWCQ PHAGGLSEAV QAACMVQYQK BACU015943/1-438 FIGVGRDPHS FGLIADLGRQ SFQCAAFWCQ PHAGGLSEAV QAACMVQYQK 651 700 ENSTTRP00000005259/1-492 CLVASAARGK AWGAQARARL RLKRTSSVDS PGGPLPLPLL KGGVGGAGAA ENSP00000346378/1-493 CLVASAARGK AWGAQARARL RLKRTSSMDS PGGPLPLPLL KGGVGGAGAT bmy_07857T0/1-723 CLVASAARGK AWGAQARARL RLKRTSSVDS PGGPLPLPLL KGGVGGAGAA ENSBTAP00000040787/1-486 CLVASAARGK AWGAQARARL RLKRTSSVDS PGGPLPLPML KGGVGGAGAA BACU015943/1-438 CLVASAARGK AWGAQARARL RLKQTSSVDS PGGPLPLPLL KGGVGGAGAA 701 750 ENSTTRP00000005259/1-492 PRKRGIFSFL DAFRLKPSLL HMP ENSP00000346378/1-493 PRKRGVFSFL DAFRLKPSLL HMP bmy_07857T0/1-723 PRKRGVFSFL DAFRLKPSLL HMP ENSBTAP00000040787/1-486 PRKRGVFSFL DAFRLKPSLL HMP BACU015943/1-438 PRKRGVFSFL DAFRLKPSLL HMP