KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:50:58 2014 Check: 00 .. Name: bmy_10112T0/1-276 Len: 361 Check: 2346 Weight: 1.00 Name: ENSBTAP00000040793/1-260 Len: 361 Check: 7623 Weight: 1.00 Name: ENSP00000325240/1-261 Len: 361 Check: 9865 Weight: 1.00 Name: ENSTTRP00000006315/1-257 Len: 361 Check: 2365 Weight: 1.00 Name: BACU006999/1-259 Len: 361 Check: 6416 Weight: 1.00 // 1 50 bmy_10112T0/1-276 MKAPLREEAT RANTLTNWGM KSAQQNLVLG TKVSSLFTYV FIAIRKQKLA ENSBTAP00000040793/1-260 ---------- ---------- ---------- ---------- ---------- ENSP00000325240/1-261 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000006315/1-257 ---------- ---------- ---------- ---------- ---------- BACU006999/1-259 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_10112T0/1-276 GSLAAAAVAV ARAGAARPPP ASSLRGRRAR ASAGVLAPAF PRALNPSRAR ENSBTAP00000040793/1-260 ---------- ---------- ---------- ---------- ---MNPNCAR ENSP00000325240/1-261 ---------- ---------- ---------- ---------- ---MNPNCAR ENSTTRP00000006315/1-257 ---------- ---------- ---------- ---------- ---MNPNCAQ BACU006999/1-259 ---------- ---------- ---------- ---------- ---MNPNCAR 101 150 bmy_10112T0/1-276 GGEILYPTGK VNCLRKFWPK ACFHYETCKM TLNMKNYKGY EKKPRCNAHY ENSBTAP00000040793/1-260 CCKIVYPTEK VNCLDKFWHK ACFHCETCKM TLNMKNYKGY EKKPYCNAHY ENSP00000325240/1-261 CGKIVYPTEK VNCLDKFWHK ACFHCETCKM TLNMKNYKGY EKKPYCNAHY ENSTTRP00000006315/1-257 -GMVVFPT-K VNFLDKFWHK ACFHCETCKM TLNMKNYKGY EKKPYCNAHY BACU006999/1-259 CGKIVYPTEK VNCLDKFWHK ACFHCETCKM TLNMKNYKGY EKKPYCNAHY 151 200 bmy_10112T0/1-276 PTQSFTTAAG SPEKQQEGEG PRATKLEAQT RDEEGKDGAV SKSLLLLVGG ENSBTAP00000040793/1-260 PKQSFTMVAD TPENLRL--- KQQSELQSQV RYKEEFEKNK GKGFSVV--- ENSP00000325240/1-261 PKQSFTMVAD TPENLRL--- KQQSELQSQV RYKEEFEKNK GKGFSVV--- ENSTTRP00000006315/1-257 PKQSFTMVAD TPENLRL--- KQQSELQSQV RYKEEFEKNK GKGFSVV--- BACU006999/1-259 PKQSFTMVAD TPENLRL--- KQQSELQSQV RYKEEFEKNK GKGFSVV--- 201 250 bmy_10112T0/1-276 CDDPCLALF- -----ISGLS CH-------- -PSGS----- ---------- ENSBTAP00000040793/1-260 ADTPELQRIK KTQDQISNIK YHEEFEKSRM GPSGGEGLEC ERRDPQE-SS ENSP00000325240/1-261 ADTPELQRIK KTQDQISNIK YHEEFEKSRM GPSGGEGMEP ERRDSQDGSS ENSTTRP00000006315/1-257 ADTPELQRIK KTQDQISNIK YHEEFEKSRM GPSGGEGLEP ERRDPQD-TG BACU006999/1-259 ADTPELQRIK KTQDQISNIK YHEEFEKSRM GPSGGEGLEP ERRDPQD-TG 251 300 bmy_10112T0/1-276 ---------P PPIFTPSPLT QGPRLTSL-- ---------H PCALPEREGP ENSBTAP00000040793/1-260 YRRPQEQQQP HHIPASTPVY QQPQQQPAAQ SYGGYKEPAA PASI-QRSAP ENSP00000325240/1-261 YRRPLEQQQP HHIPTSAPVY QQPQQQPVAQ SYGGYKEPAA PVSI-QRSAP ENSTTRP00000006315/1-257 YRRPQEQQ-P HHIPTSAPVY QQPQQQQAAQ SYGGYKEPAA PVSI-QRSAP BACU006999/1-259 YRRPQEQQ-P HHIPTSVPVY QQPQQQQAAQ SYGGYKEPAA PVSI-QRSAP 301 350 bmy_10112T0/1-276 AG-------- ---------- -IFSIKSSLL QILT------ ---------D ENSBTAP00000040793/1-260 GGGGKRYRAV YDYSAADEDE VSFQDGDTIV NVQQIDDGWM YGTVERTGDT ENSP00000325240/1-261 GGGGKRYRAV YDYSAADEDE VSFQDGDTIV NVQQIDDGWM YGTVERTGDT ENSTTRP00000006315/1-257 GGGGKRYRAV YDYSAADEDE VSFQDGDTIV NVQQIDDGWM YGTVERTGDT BACU006999/1-259 GGGGKRYRAV YDYSAADEDE VSFQDGDTIV NVQQIDDGWM YGTVERTGDT 351 400 bmy_10112T0/1-276 SIRLSLYVIT - ENSBTAP00000040793/1-260 GMLPANYVEA I ENSP00000325240/1-261 GMLPANYVEA I ENSTTRP00000006315/1-257 GMLPANYVEA I BACU006999/1-259 GMLPANYVEA I