KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:01 2014 Check: 00 .. Name: ENSTTRP00000014021/1-432 Len: 441 Check: 5065 Weight: 1.00 Name: bmy_20258T0/1-259 Len: 441 Check: 4709 Weight: 1.00 Name: BACU010774/1-312 Len: 441 Check: 938 Weight: 1.00 Name: ENSP00000355110/1-435 Len: 441 Check: 7277 Weight: 1.00 Name: ENSBTAP00000040815/1-434 Len: 441 Check: 2369 Weight: 1.00 // 1 50 ENSTTRP00000014021/1-432 MLPARCARLL APHLLLVLVQ LSPARGHRTT -PRXXISDRD PQCN-HCCRT bmy_20258T0/1-259 ---------- ---------- ---------- ---------- ---------- BACU010774/1-312 ---------- MKHL------ ---------- ---------- ---------- ENSP00000355110/1-435 MLPARCARLL TPHLLLVLVQ LSPARGHRTT GPRFLISDRD PQCNLHCSRT ENSBTAP00000040815/1-434 MLPARCARLL TPHLLLALVQ LSPAHDHRTT GPRFLISDRD PQCNLHCSRT 51 100 ENSTTRP00000014021/1-432 QPKPICASDG R-YESMCEYQ RAKCRDPTLG VVHRGRCKXX XXXXXXXXXX bmy_20258T0/1-259 ---------- ---------- ---------- ---------- ---------- BACU010774/1-312 ---------- ---------- ---------- ---------- ---------- ENSP00000355110/1-435 QPKPICASDG RSYESMCEYQ RAKCRDPTLG VVHRGRCKDA GQSKCRLERA ENSBTAP00000040815/1-434 QPKPVCASDG RSYESMCEYQ RAKCRDPTLA VAHRGRCKDA GQSKCRLERA 101 150 ENSTTRP00000014021/1-432 XXXXXXXXXX XXXXXXXXXX XXXXXXVQCH TYTGYCWCVT PDGKPISGSS bmy_20258T0/1-259 ---------- ---------- ---------- --MGCS---- ----PSS--- BACU010774/1-312 ----QQERPT RGFWFFNCTE ---------K YFPGCTFQFV VALYPVD--- ENSP00000355110/1-435 QALEQAKKPQ EAVFVPECGE DGSFTQVQCH TYTGYCWCVT PDGKPISGSS ENSBTAP00000040815/1-434 QALEQAKKPQ EAVFVPECTE DGSFTQVQCH TYTGYCWCVT PDGKPISGSS 151 200 ENSTTRP00000014021/1-432 VQNKTPVCSG SVTDKPVSQG NSGRKDDGSK PTPTMETQPV FDGDEITAPT bmy_20258T0/1-259 -EQERPAIS- ---------- ---------- ---SLGPGQV LAGKAQE--- BACU010774/1-312 -NNKKQTCG- ---------- ----HDDGSK PTPTMETQPV FDGDEITAPT ENSP00000355110/1-435 VQNKTPVCSG SVTDKPLSQG NSGRKDDGSK PTPTMETQPV FDGDEITAPT ENSBTAP00000040815/1-434 VQNKTPVCSG SVTDKPASQG NSGRKDDGSK PTPTMETQPV FDGDEITAPT 201 250 ENSTTRP00000014021/1-432 LWIKHLVIKD SKLNNTNVRN SEKVHSCDXX XXXXXXXXXX XXXXXXXXXX bmy_20258T0/1-259 -WESPQAVSS L--------- AEKVHSCDQE RQSALEDARQ NPREGIVIPE BACU010774/1-312 LWIKHLVIKD SKLNNTNVRN SEKVHSCDQE RQSALEEARQ NPREGIVIPE ENSP00000355110/1-435 LWIKHLVIKD SKLNNTNIRN SEKVYSCDQE RQSALEEAQQ NPREGIVIPE ENSBTAP00000040815/1-434 LWIKHLVIKD SKLNNTNIRN SEKVHSCDQE RQSALEEARQ NPREGIVIPE 251 300 ENSTTRP00000014021/1-432 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXYVMP SCESDARAKS bmy_20258T0/1-259 CAPGGLYKPV QCHQSTGYCW CVLVDTGRPL PGTSTRYVMP SCESDARAKS BACU010774/1-312 CAPGGLYKPV QCHQSTGYCW CVLVDTGRPL PGTSTRYVMP SCDSDARAKS ENSP00000355110/1-435 CAPGGLYKPV QCHQSTGYCW CVLVDTGRPL PGTSTRYVMP SCESDARAKT ENSBTAP00000040815/1-434 CAPGGLYKPV QCHQSTGYCW CVLVDTGRPL PGTSTRYVMP SCESDARAKS 301 350 ENSTTRP00000014021/1-432 AEVDDPFKDR ELPGCPEGKK MEFITSLLDA LTTDMVQAIN SAAPTGGGRF bmy_20258T0/1-259 VEVDDPFKDR ELPGCPEGKK MEFITSLLDA LTTDMVQAIN SAAPTGGGRF BACU010774/1-312 AEVDDPFKDR ELPGCPEGKK MEFITSLLDA LTTDMVQAIN SAAPTGGGRF ENSP00000355110/1-435 TEADDPFKDR ELPGCPEGKK MEFITSLLDA LTTDMVQAIN SAAPTGGGRF ENSBTAP00000040815/1-434 AEVEDPFKDR ELPGCPEGKK LEFITSLLDA LTTDMVQAIN SAAPTGGGRF 351 400 ENSTTRP00000014021/1-432 SEPDPSHTLE ERVVHWYFSQ LDSNSSDDIN KREMKPFKRY VKKKAKPKKC bmy_20258T0/1-259 SEPDPSHTLE ERVVHWYFSQ LDSNSSDDIN KREMKPFKRY VKKKAKPKKC BACU010774/1-312 SEPDPSHTLE ERVVHWYFSQ LDSNSSDDIN KREMKPFKRY VKKKAKPKKC ENSP00000355110/1-435 SEPDPSHTLE ERVVHWYFSQ LDSNSSNDIN KREMKPFKRY VKKKAKPKKC ENSBTAP00000040815/1-434 SEPDPSHTLE ERVVHWYFSQ LDSNSSSDIN KREMKPFKRY VKKKAKPKKC 401 450 ENSTTRP00000014021/1-432 ARRFTDYCDL NKDKVISLAE LKGCLGVSKE VGRLV----- - bmy_20258T0/1-259 ARRFTDYCDL NKDKVISLPE LKGCLGVSKE -GECSSVLLA R BACU010774/1-312 ARRFTDYCDL NKDKVISLPE LKGCLGVNKE -GECSPVLLA R ENSP00000355110/1-435 ARRFTDYCDL NKDKVISLPE LKGCLGVSKE VGRLV----- - ENSBTAP00000040815/1-434 ARRFTDYCDL NKDKVISLPE LKGCLGVSKE -GRLV----- -