KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:51:07 2014 Check: 00 .. Name: ENSP00000266503/1-636 Len: 640 Check: 8330 Weight: 1.00 Name: ENSBTAP00000040847/1-629 Len: 640 Check: 1070 Weight: 1.00 Name: ENSTTRP00000011707/1-623 Len: 640 Check: 623 Weight: 1.00 Name: BACU006115/1-434 Len: 640 Check: 2238 Weight: 1.00 Name: bmy_12998T0/1-461 Len: 640 Check: 1281 Weight: 1.00 // 1 50 ENSP00000266503/1-636 MAAEEEAAAG GKVLREENQC IAPVVSSRVS PGTRPTAMGS FSSHMTEFPR ENSBTAP00000040847/1-629 ---------- GKVLMEGNQC IASVVSSHLS PWTKPIDTGS FSPHVTELPR ENSTTRP00000011707/1-623 ---------- -KVLIEGNQC IAAMVSSHLS PWTKPATIGS FSPHVTEFPR BACU006115/1-434 ---------- ---------- ---MVSSHLS PWTKPATVGS FSPHVTEFPR bmy_12998T0/1-461 ---------- ---------- ---MVSSHLS PWTKPATIGS FSPHVTEFPR 51 100 ENSP00000266503/1-636 KRKGSDSDPS QSGIMTEKVV EKLSQNPLTY LLSTRIEISA SSGSRVEDGE ENSBTAP00000040847/1-629 KRRRSDSDPS QSGIMKEKVM EKLSQNPFTC LLSTRVEMSA FSCSRMEDGE ENSTTRP00000011707/1-623 KRKGSDSDPS QSGIMKEKMV EKLSQNPFSY LLSTRVEIPA SSGSRMEDGE BACU006115/1-434 KRKGSDSDPS QSGIMKEKVV EKHSQNPFPY LLSTRVEISA SSGS------ bmy_12998T0/1-461 KRKGSDSDPS Q--------- ---------- ---------- -----MEDGE 101 150 ENSP00000266503/1-636 HQVKMKAFRE AHSQTEKRRR DKMNNLIEEL SAMIPQCNPM ARKLDKLTVL ENSBTAP00000040847/1-629 QQVKIKSFRE AHSQTEKRRR DKMNNLIGKL STMIPQCSPM ARKLDKLTVL ENSTTRP00000011707/1-623 QQVKMKSFRE AHSQTEKRRR DKMNNLIEKL SAMIPQCNPM ARKLDKLTVL BACU006115/1-434 --------RE AHSQTEKRRR DKMNNLIEKL SAMIPQCNPM ARKLDKLTVL bmy_12998T0/1-461 QQVKMKSFRY TELLREYTTA EGFLFVVG-- ------CER- ----GKILFI 151 200 ENSP00000266503/1-636 RMAVQHLRSL KGLTNSYVGS NYRPSFLQDN ELRHLILKTA EGFLFVVGCE ENSBTAP00000040847/1-629 RLAVQHLRSL KGMTSCYPGN NYRPSFIHDN ELRHLILKTA EGFLFVVGCE ENSTTRP00000011707/1-623 RMAVEHLRSL KGMTSSYAGN NYRPSFIQDN ELRHLILKTA EGFLFVVGCE BACU006115/1-434 RMAVEHLRSL KGMTSSYAGN NYRPSFIQDN ELRHLILK-- ---------- bmy_12998T0/1-461 SKSVSKILN- ---------- -Y-------- ---------- ---------- 201 250 ENSP00000266503/1-636 RGKILFVSKS VSKILNYDQA SLTGQSLFDF LHPKDVAKVK EQLSSFDISP ENSBTAP00000040847/1-629 RGKILFVSKS VSRILNYDQA SLIGQSLFDF LHPKDVSKVK EQLSSSDISP ENSTTRP00000011707/1-623 RGKILFISKS VSKILNYDQA XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX BACU006115/1-434 ---------- ---------A SLTGQSLFDF LHPKDVAEVK EQLSSSDISP bmy_12998T0/1-461 ---------- -------DQA SLTGQSLFDF LHPKDVAKVK EQLSSSDISP 251 300 ENSP00000266503/1-636 REKLIDAKTG LQVHSNLHAG RTRVYSGSRR SFFCRIKSCK ISVKEEHGCL ENSBTAP00000040847/1-629 REKLIDAKAA LQVHSNFHTS KSHVYSGSRR SFFCRIKSCK ISVKEEHEYL ENSTTRP00000011707/1-623 XXXXXXXXXG LQAHSNFHTA RSCVYSGSRR SFFCRIKSCK ISVKEEHECL BACU006115/1-434 REKLIDAEN- ---------- ---------- ---------- ---------- bmy_12998T0/1-461 REKLIDAEN- ---------- ---------- ---------- ---------- 301 350 ENSP00000266503/1-636 PNSKKKEHRK FYTIHCTGYL RSWPPNIVGM EEERNSKKDN SNFTCLVAIG ENSBTAP00000040847/1-629 PNSKKKDHRK FCTVHCTGYL RSWPPNIAGM EEERDNKKDR SNFTCLVAVG ENSTTRP00000011707/1-623 LNSKKKDHRK FCTIHCTGYL RNWPPNIVGM EEEMDNKKDS SNFTCLVAIG BACU006115/1-434 -------HRK FCTIHCTGYL RNWPPNIVGM EEETDNQKDS SNFTCLVAIG bmy_12998T0/1-461 -------HRK FCTIHCTGYL RNWPPNIVGM EEEMDNKKDS SNFTCLVAIG 351 400 ENSP00000266503/1-636 RLQPYIVPQN SGEINVKPTE FITRFAVNGK FVYVDQ---- RATAILGYLP ENSBTAP00000040847/1-629 RLQPHIVPQN SGEIKVKPTE FITRFAVNGK FVYVDQSFKT RATAILGYLP ENSTTRP00000011707/1-623 RLHPYIVPQN SGEIKVKPTE FITRFAVNGQ FVYVDQ---- RATAILGYLP BACU006115/1-434 RLHPYIVPQN SGEIKVKPTE FITRFAVNGQ FVYVDQ---- R--------- bmy_12998T0/1-461 RLHPYIVPQN SGEIKVKPTE FITRFAVNGQ FVYVDQ---- RATAILGYLP 401 450 ENSP00000266503/1-636 QELLGTSCYE YFHQDDHNNL TDKHKAVLQS KEKILTDSYK FRAKDGSFVT ENSBTAP00000040847/1-629 QELLGTSCYE YFHQDDHSNL TDKHKAVLQS KEKIFTDSYK FRAKDGSFVT ENSTTRP00000011707/1-623 QELLGTSCYE YFHQDDHSNL TDKHK--LQS KEKIFTDSYK FRAKDGSFVT BACU006115/1-434 ---------- ---------- ---------- ---------- ---------- bmy_12998T0/1-461 QELLGTSCYE YFHQDDHSNL TDKHKAVLQS KEKIFTDSYK FRAKDGSFVT 451 500 ENSP00000266503/1-636 LKSQWFSFTN PWTKELEYIV SVNTLVLGHS EPGEASFLPC SSQSSEESSR ENSBTAP00000040847/1-629 LKSQWFSFTN PWTKELEYIV SVNTVVLGHS DAGETSLLPC SSQSSEGSSR ENSTTRP00000011707/1-623 LKSQWFSFTN PWTKELEYIV SVNTLVLGHS DTGETSLLPC SSQSSEGSSR BACU006115/1-434 ---------- ---------- -------GHS DTGETSLLPC SSQSSEGSSR bmy_12998T0/1-461 LKSQWFSFTN PWTKELEYIV SVNTLVLGHS DTGETSLLPC SSQSSEGSSR 501 550 ENSP00000266503/1-636 QSCMSVPGMS TGTVLGAGSI GTDIANEILD LQRLQSSSYL DDSSPTGLMK ENSBTAP00000040847/1-629 QSFISVPGTS TEILLGAGSI GTDVASELLD LQRLQSSSSL -DSNPTDLLK ENSTTRP00000011707/1-623 QSCISVPGMY TGTVLGAGSI GTDIASELLD LQRLQSSSSL DDSSPTDLLK BACU006115/1-434 QSCISVPGMS TGTVLGAGSI GTDIASELLD LQRLQSSSSL DDSSPTDLLK bmy_12998T0/1-461 QSCNSVPGMS TGTVLGAGSI GTDIASELLD LQRLQSSSSL DDSSPTDLLK 551 600 ENSP00000266503/1-636 DTHTVNCRSM SNKELFPPSP SEMGELEATR QNQSTVAVHS HEPLLSDGAQ ENSBTAP00000040847/1-629 DTHTLNCRNM SDKELITLSP SEIGEREATK QNQSATAPLS HEPLLGEGVQ ENSTTRP00000011707/1-623 DTHTINCRNM SNKELTTLSP SEIGELQATK QNQSAVAPHR HEPLLGEGAQ BACU006115/1-434 DTHTINCRNM SDKELTTLSL SEIGEPQATK QNQSAATPQS HEPLLGEGAQ bmy_12998T0/1-461 DTHTINCRNM SDKELTTLSP SEIGELQATK QNQSAATPQS HEPLLGEGAQ 601 650 ENSP00000266503/1-636 LDFDALCDND DTAMAAFMNY LEAEGGLGDP GDFSDIQWTL ENSBTAP00000040847/1-629 LDLEALCDND DTAMAAFMNY LEAEGGLGDP GDFSDIHWTL ENSTTRP00000011707/1-623 LDFDALCDND DTAVAAFMNY LEAEGGLGDP GDFSDIHWAL BACU006115/1-434 LDFDALCDND DTAMAAFMNY LEAEGGLGDP GDFSDIHWTL bmy_12998T0/1-461 LDFDALCDND DTAMAAFMNY LEAEGGLGDP GDFSDIHWTL